Wall clock time and date at job start Tue Mar 31 2020 17:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.50693 * 109.47232 * 239.99345 * 2 1 3 5 5 H 1.07998 * 120.00570 * 239.99606 * 4 2 1 6 6 C 1.37881 * 119.99787 * 60.00354 * 4 2 1 7 7 N 1.31507 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47247 * 89.99952 * 8 6 4 10 10 H 1.48505 * 109.47181 * 209.99479 * 8 6 4 11 11 H 1.48496 * 109.47743 * 329.99985 * 8 6 4 12 12 N 1.46505 * 109.47115 * 119.99820 * 2 1 3 13 13 C 1.46495 * 120.00624 * 59.99867 * 12 2 1 14 14 S 1.65605 * 119.99691 * 240.00169 * 12 2 1 15 15 O 1.42099 * 106.40406 * 336.45790 * 14 12 2 16 16 O 1.42101 * 106.40084 * 203.53914 * 14 12 2 17 17 N 1.65597 * 107.22036 * 89.99882 * 14 12 2 18 18 C 1.46509 * 119.99877 * 64.99689 * 17 14 12 19 19 C 1.53002 * 109.46847 * 164.99929 * 18 17 14 20 20 C 1.53000 * 109.47022 * 179.97438 * 19 18 17 21 21 H 1.09005 * 109.57139 * 55.25426 * 20 19 18 22 22 C 1.50463 * 109.57475 * 175.63454 * 20 19 18 23 23 C 1.54291 * 113.03398 * 211.96749 * 22 20 19 24 24 C 1.54067 * 112.28675 * 318.30291 * 23 22 20 25 25 N 1.44273 * 111.98335 * 318.91308 * 24 23 22 26 26 C 1.47804 * 109.46167 * 96.43648 * 25 24 23 27 27 C 1.45860 * 112.91919 * 276.74124 * 26 25 24 28 28 H 1.08997 * 109.47272 * 300.00002 * 1 2 3 29 29 H 1.08994 * 109.47370 * 60.00465 * 1 2 3 30 30 H 1.09001 * 109.46758 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00300 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47337 * 270.00534 * 13 12 2 33 33 H 1.09003 * 109.46730 * 30.00071 * 13 12 2 34 34 H 1.09000 * 109.47552 * 149.99931 * 13 12 2 35 35 H 0.96998 * 120.00118 * 245.00323 * 17 14 12 36 36 H 1.08998 * 109.47013 * 45.00534 * 18 17 14 37 37 H 1.08995 * 109.47152 * 285.00116 * 18 17 14 38 38 H 1.09007 * 109.47034 * 60.00376 * 19 18 17 39 39 H 1.08995 * 109.47766 * 300.00433 * 19 18 17 40 40 H 1.08998 * 108.76623 * 332.88418 * 22 20 19 41 41 H 1.08996 * 108.76815 * 91.04919 * 22 20 19 42 42 H 1.09003 * 108.91513 * 79.02175 * 23 22 20 43 43 H 1.08997 * 108.91828 * 197.57481 * 23 22 20 44 44 H 1.09003 * 108.97680 * 198.27042 * 24 23 22 45 45 H 1.08996 * 108.98030 * 79.55990 * 24 23 22 46 46 H 1.00901 * 110.99820 * 333.56704 * 25 24 23 47 47 H 1.08999 * 108.79196 * 37.63055 * 26 25 24 48 48 H 1.08997 * 108.79207 * 155.85561 * 26 25 24 49 49 H 1.08998 * 109.05514 * 181.87075 * 27 26 25 50 50 H 1.08996 * 109.05460 * 300.78246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8294 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4873 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4282 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7118 -0.8787 2.9816 17 7 1.9607 0.8093 3.3998 18 6 1.1509 -0.0350 4.2818 19 6 0.6087 0.8079 5.4378 20 6 -0.2375 -0.0737 6.3586 21 1 0.3525 -0.9285 6.6892 22 6 -0.6835 0.7264 7.5523 23 6 -0.8226 -0.1248 8.8317 24 6 -1.4785 -1.4913 8.5559 25 7 -2.5788 -1.3850 7.6288 26 6 -2.1071 -1.7075 6.2657 27 6 -1.4860 -0.5704 5.5957 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7082 1.1606 -3.4844 32 1 0.7376 -2.1443 1.9995 33 1 1.5296 -2.5969 0.4711 34 1 2.4629 -2.5818 1.9866 35 1 1.9054 1.7753 3.4680 36 1 1.7669 -0.8421 4.6783 37 1 0.3188 -0.4565 3.7178 38 1 -0.0074 1.6150 5.0413 39 1 1.4407 1.2294 6.0017 40 1 0.0429 1.5182 7.7350 41 1 -1.6476 1.1829 7.3282 42 1 0.1676 -0.2875 9.2572 43 1 -1.4306 0.4198 9.5540 44 1 -1.8453 -1.9045 9.4955 45 1 -0.7300 -2.1667 8.1417 46 1 -2.9907 -0.4644 7.6606 47 1 -1.3810 -2.5180 6.3280 48 1 -2.9561 -2.0445 5.6710 49 1 -1.1930 -0.8673 4.5887 50 1 -2.2094 0.2422 5.5295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575911305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:36 Heat of formation + Delta-G solvation = -91.901543 kcal Electronic energy + Delta-G solvation = -28463.857278 eV Core-core repulsion = 24652.006919 eV Total energy + Delta-G solvation = -3811.850360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.85700 -36.73031 -36.26115 -36.05257 -35.22771 -33.59582 -32.82715 -32.58501 -29.12177 -29.00328 -26.14689 -25.51134 -25.18165 -24.48456 -22.45368 -21.36846 -20.79630 -19.88563 -18.70379 -17.28998 -16.85663 -16.50559 -16.06860 -15.80460 -15.56224 -15.33001 -15.15905 -14.97472 -14.47977 -14.28074 -13.46059 -13.43319 -13.30459 -13.05862 -12.84369 -12.81724 -12.61349 -12.03948 -12.00081 -11.82989 -11.79131 -11.60538 -11.48084 -11.34960 -11.30689 -11.22754 -11.07626 -10.92632 -10.82748 -10.78505 -10.67876 -10.49669 -10.40528 -10.24075 -10.06340 -9.31001 -9.23768 -8.71301 -8.46703 -7.98604 -6.08517 -4.15033 1.22302 3.27462 3.34666 3.38642 3.50154 4.07423 4.11082 4.25058 4.35682 4.39356 4.52777 4.70316 4.82613 4.90349 4.95997 4.98374 5.16551 5.20049 5.23455 5.33821 5.36133 5.39950 5.47140 5.62638 5.66182 5.71543 5.72317 5.76819 5.79579 5.84751 5.89810 6.02621 6.09421 6.11803 6.18801 6.35009 6.65102 6.76746 6.76922 6.82787 7.02299 7.11962 7.15625 7.48398 7.62033 7.78308 8.03932 8.26551 8.87024 9.50690 10.97221 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002935 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.792144 B = 9538.930150 C =10202.884161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.988 5.988 13 C 0.096 3.904 14 S 2.779 3.221 15 O -0.975 6.975 16 O -0.998 6.998 17 N -1.134 6.134 18 C 0.120 3.880 19 C -0.119 4.119 20 C -0.086 4.086 21 H 0.076 0.924 22 C -0.118 4.118 23 C -0.151 4.151 24 C 0.052 3.948 25 N -0.674 5.674 26 C 0.049 3.951 27 C -0.155 4.155 28 H 0.009 0.991 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.340 0.660 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -1.529 20.320 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.051 4.051 14 S 2.788 3.212 15 O -0.959 6.959 16 O -0.982 6.982 17 N -0.893 5.893 18 C -0.007 4.007 19 C -0.158 4.158 20 C -0.105 4.105 21 H 0.094 0.906 22 C -0.156 4.156 23 C -0.191 4.191 24 C -0.079 4.079 25 N -0.303 5.303 26 C -0.080 4.080 27 C -0.193 4.193 28 H 0.028 0.972 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.158 0.842 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.130 -2.227 20.299 21.321 hybrid contribution 0.333 0.870 -1.096 1.438 sum -5.797 -1.357 19.203 20.105 Atomic orbital electron populations 1.22101 0.98244 0.99688 1.00493 1.18717 0.91264 0.92998 0.80456 0.92422 1.21339 1.31598 1.13026 0.90078 0.91902 1.24907 0.94965 0.94993 0.99011 1.69856 1.36547 1.22692 1.23785 0.86496 0.79293 0.79286 0.82329 1.20650 1.21120 1.19830 1.57641 1.69891 1.19818 1.35766 1.21318 0.98602 0.82483 1.02685 1.01904 0.73656 0.73159 0.72459 1.93613 1.74447 1.55978 1.71905 1.93519 1.69299 1.60820 1.74530 1.56204 1.62608 1.17283 1.53201 1.21277 0.94733 0.93422 0.91250 1.21852 0.99419 0.98467 0.96068 1.20963 0.96200 0.98606 0.94747 0.90591 1.21444 1.01657 0.98433 0.94059 1.22628 1.01583 0.97211 0.97648 1.21900 0.92630 0.96034 0.97293 1.61080 1.28871 1.34762 1.05549 1.20989 0.99706 0.97536 0.89758 1.21446 0.97271 0.99639 1.00982 0.97168 0.88981 0.94870 0.92696 0.94605 0.89816 0.91939 0.75655 0.90885 0.91652 0.91110 0.91125 0.91686 0.92245 0.91675 0.91955 0.91347 0.91672 0.84175 0.91275 0.90874 0.90293 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.97 37.16 0.33 -2.92 16 2 C 0.27 6.50 2.62 -69.08 -0.18 6.32 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.93 7.99 -34.44 -0.28 -14.20 16 5 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.99 -20.15 3.12 -115.86 -0.36 -20.51 16 13 C 0.10 1.66 9.65 59.84 0.58 2.24 16 14 S 2.78 53.84 6.14 -107.50 -0.66 53.18 16 15 O -0.98 -22.70 16.70 -57.17 -0.95 -23.66 16 16 O -1.00 -20.52 16.21 -57.17 -0.93 -21.44 16 17 N -1.13 -16.25 6.05 -10.61 -0.06 -16.31 16 18 C 0.12 1.40 6.04 -4.04 -0.02 1.38 16 19 C -0.12 -1.07 4.66 -26.73 -0.12 -1.20 16 20 C -0.09 -0.67 1.85 -91.10 -0.17 -0.83 16 21 H 0.08 0.62 7.17 -51.93 -0.37 0.25 16 22 C -0.12 -0.81 4.84 -27.32 -0.13 -0.94 16 23 C -0.15 -0.96 5.92 -25.50 -0.15 -1.11 16 24 C 0.05 0.37 6.01 -4.67 -0.03 0.34 16 25 N -0.67 -5.19 6.91 -118.15 -0.82 -6.01 16 26 C 0.05 0.38 5.87 -6.71 -0.04 0.34 16 27 C -0.15 -1.21 4.70 -29.32 -0.14 -1.34 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 30 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 34 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 35 H 0.41 5.18 8.65 -34.47 -0.30 4.88 16 36 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 37 H 0.07 0.75 6.27 -51.93 -0.33 0.42 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.62 7.98 -51.93 -0.41 0.21 16 40 H 0.06 0.45 7.61 -51.93 -0.40 0.05 16 41 H 0.06 0.40 6.79 -51.93 -0.35 0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 46 H 0.34 2.40 7.35 -39.29 -0.29 2.11 16 47 H 0.07 0.55 7.24 -51.93 -0.38 0.18 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.68 5.98 -51.93 -0.31 0.37 16 50 H 0.06 0.50 7.59 -51.93 -0.39 0.11 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -31.59 385.97 -11.36 -42.95 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.55 Total: 4.31 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.45 Total: -10.31 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.61 Total: -66.87 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.88 Total: -45.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.66 Total: 53.18 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.59 -11.36 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.955 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds