Wall clock time and date at job start Tue Mar 31 2020 17:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.50693 * 109.47232 * 239.99345 * 2 1 3 5 5 H 1.07998 * 120.00570 * 239.99606 * 4 2 1 6 6 C 1.37881 * 119.99787 * 60.00354 * 4 2 1 7 7 N 1.31507 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47247 * 89.99952 * 8 6 4 10 10 H 1.48505 * 109.47181 * 209.99479 * 8 6 4 11 11 H 1.48496 * 109.47743 * 329.99985 * 8 6 4 12 12 N 1.46505 * 109.47115 * 119.99820 * 2 1 3 13 13 C 1.46495 * 120.00624 * 59.99867 * 12 2 1 14 14 S 1.65605 * 119.99691 * 240.00169 * 12 2 1 15 15 O 1.42099 * 106.40406 * 336.45790 * 14 12 2 16 16 O 1.42101 * 106.40084 * 203.53914 * 14 12 2 17 17 N 1.65597 * 107.22036 * 89.99882 * 14 12 2 18 18 C 1.46509 * 119.99877 * 64.99689 * 17 14 12 19 19 C 1.53002 * 109.46847 * 164.99929 * 18 17 14 20 20 C 1.53000 * 109.47022 * 179.97438 * 19 18 17 21 21 H 1.09005 * 109.57139 * 55.25426 * 20 19 18 22 22 C 1.50463 * 109.57475 * 175.63454 * 20 19 18 23 23 C 1.54291 * 113.03398 * 211.96749 * 22 20 19 24 24 C 1.54067 * 112.28675 * 318.30291 * 23 22 20 25 25 N 1.44273 * 111.98335 * 318.91308 * 24 23 22 26 26 C 1.47804 * 109.46167 * 96.43648 * 25 24 23 27 27 C 1.45860 * 112.91919 * 276.74124 * 26 25 24 28 28 H 1.08997 * 109.47272 * 300.00002 * 1 2 3 29 29 H 1.08994 * 109.47370 * 60.00465 * 1 2 3 30 30 H 1.09001 * 109.46758 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00300 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47337 * 270.00534 * 13 12 2 33 33 H 1.09003 * 109.46730 * 30.00071 * 13 12 2 34 34 H 1.09000 * 109.47552 * 149.99931 * 13 12 2 35 35 H 0.96998 * 120.00118 * 245.00323 * 17 14 12 36 36 H 1.08998 * 109.47013 * 45.00534 * 18 17 14 37 37 H 1.08995 * 109.47152 * 285.00116 * 18 17 14 38 38 H 1.09007 * 109.47034 * 60.00376 * 19 18 17 39 39 H 1.08995 * 109.47766 * 300.00433 * 19 18 17 40 40 H 1.08998 * 108.76623 * 332.88418 * 22 20 19 41 41 H 1.08996 * 108.76815 * 91.04919 * 22 20 19 42 42 H 1.09003 * 108.91513 * 79.02175 * 23 22 20 43 43 H 1.08997 * 108.91828 * 197.57481 * 23 22 20 44 44 H 1.09003 * 108.97680 * 198.27042 * 24 23 22 45 45 H 1.08996 * 108.98030 * 79.55990 * 24 23 22 46 46 H 1.00901 * 110.99820 * 333.56704 * 25 24 23 47 47 H 1.08999 * 108.79196 * 37.63055 * 26 25 24 48 48 H 1.08997 * 108.79207 * 155.85561 * 26 25 24 49 49 H 1.08998 * 109.05514 * 181.87075 * 27 26 25 50 50 H 1.08996 * 109.05460 * 300.78246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8294 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4873 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4282 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7118 -0.8787 2.9816 17 7 1.9607 0.8093 3.3998 18 6 1.1509 -0.0350 4.2818 19 6 0.6087 0.8079 5.4378 20 6 -0.2375 -0.0737 6.3586 21 1 0.3525 -0.9285 6.6892 22 6 -0.6835 0.7264 7.5523 23 6 -0.8226 -0.1248 8.8317 24 6 -1.4785 -1.4913 8.5559 25 7 -2.5788 -1.3850 7.6288 26 6 -2.1071 -1.7075 6.2657 27 6 -1.4860 -0.5704 5.5957 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7082 1.1606 -3.4844 32 1 0.7376 -2.1443 1.9995 33 1 1.5296 -2.5969 0.4711 34 1 2.4629 -2.5818 1.9866 35 1 1.9054 1.7753 3.4680 36 1 1.7669 -0.8421 4.6783 37 1 0.3188 -0.4565 3.7178 38 1 -0.0074 1.6150 5.0413 39 1 1.4407 1.2294 6.0017 40 1 0.0429 1.5182 7.7350 41 1 -1.6476 1.1829 7.3282 42 1 0.1676 -0.2875 9.2572 43 1 -1.4306 0.4198 9.5540 44 1 -1.8453 -1.9045 9.4955 45 1 -0.7300 -2.1667 8.1417 46 1 -2.9907 -0.4644 7.6606 47 1 -1.3810 -2.5180 6.3280 48 1 -2.9561 -2.0445 5.6710 49 1 -1.1930 -0.8673 4.5887 50 1 -2.2094 0.2422 5.5295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575911305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:36 Heat of formation + Delta-G solvation = -115.538225 kcal Electronic energy + Delta-G solvation = -28464.882242 eV Core-core repulsion = 24652.006919 eV Total energy + Delta-G solvation = -3812.875323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46555 -38.34831 -37.89481 -37.09472 -36.89391 -34.52805 -34.41570 -33.39867 -30.91624 -29.82309 -27.23702 -27.00647 -26.74838 -25.18276 -23.21157 -22.60483 -21.99309 -20.60458 -20.06590 -18.80566 -18.59344 -18.11602 -17.38026 -16.81422 -16.46407 -16.25879 -16.19245 -15.77929 -15.74047 -15.21306 -15.13881 -14.83253 -14.38472 -14.04977 -13.81047 -13.77447 -13.71037 -13.49218 -13.43208 -13.17767 -13.13578 -13.01076 -12.86820 -12.72402 -12.67589 -12.61170 -12.33662 -12.17710 -12.12831 -12.03714 -11.88937 -11.64565 -11.46671 -11.31930 -11.15926 -11.04816 -10.50990 -10.38817 -9.65379 -9.28988 -8.12062 -6.25330 -0.30850 1.41795 1.44123 1.53354 2.05322 2.43137 2.63629 3.16444 3.42834 3.50873 3.64977 3.76485 3.89807 4.02787 4.13243 4.20867 4.26505 4.35911 4.43881 4.51303 4.54317 4.68152 4.76130 4.77196 4.79421 4.80707 4.91900 5.01527 5.03969 5.05891 5.08786 5.15724 5.17116 5.20637 5.23845 5.27294 5.29425 5.34723 5.41737 5.54103 5.61463 5.69867 5.87844 6.07049 6.19788 6.21525 6.30597 6.58004 6.82397 7.43512 8.92121 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002935 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.792144 B = 9538.930150 C =10202.884161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.996 5.996 13 C 0.091 3.909 14 S 2.795 3.205 15 O -1.020 7.020 16 O -1.011 7.011 17 N -1.119 6.119 18 C 0.111 3.889 19 C -0.112 4.112 20 C -0.080 4.080 21 H 0.073 0.927 22 C -0.116 4.116 23 C -0.146 4.146 24 C 0.052 3.948 25 N -0.680 5.680 26 C 0.052 3.948 27 C -0.151 4.151 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.421 0.579 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.344 0.656 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 -2.072 21.618 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.838 5.838 13 C -0.055 4.055 14 S 2.804 3.196 15 O -1.004 7.004 16 O -0.994 6.994 17 N -0.882 5.882 18 C -0.014 4.014 19 C -0.151 4.151 20 C -0.100 4.100 21 H 0.091 0.909 22 C -0.154 4.154 23 C -0.185 4.185 24 C -0.078 4.078 25 N -0.310 5.310 26 C -0.077 4.077 27 C -0.189 4.189 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.163 0.837 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.030 -2.785 21.607 22.892 hybrid contribution 0.604 1.028 -1.393 1.834 sum -6.426 -1.757 20.214 21.283 Atomic orbital electron populations 1.21886 0.96710 1.00196 1.00394 1.18379 0.92282 0.91271 0.81099 0.95862 1.21671 1.31627 1.13063 0.91531 0.92475 1.25626 0.95238 0.95700 1.01636 1.69971 1.37306 1.23661 1.24337 0.85611 0.78781 0.78447 0.79111 1.19420 1.20986 1.20018 1.57509 1.69912 1.21093 1.35247 1.21502 1.00556 0.80731 1.02695 1.01192 0.73660 0.72320 0.72402 1.93548 1.76038 1.57429 1.73401 1.93498 1.70027 1.61331 1.74572 1.55765 1.62277 1.18057 1.52141 1.21565 0.94525 0.93572 0.91737 1.21820 0.99768 0.98350 0.95198 1.20908 0.95881 0.98375 0.94809 0.90861 1.21412 1.01860 0.98358 0.93754 1.22568 1.01708 0.96722 0.97522 1.21891 0.92379 0.96405 0.97119 1.61076 1.29230 1.35148 1.05532 1.20938 0.99492 0.97438 0.89845 1.21404 0.97299 0.99686 1.00552 0.94594 0.91669 0.93927 0.92643 0.91250 0.91024 0.91075 0.74402 0.90967 0.90897 0.90516 0.90656 0.91472 0.91888 0.91523 0.91321 0.91279 0.92140 0.83741 0.91608 0.91153 0.90912 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.97 71.98 0.65 -5.16 16 2 C 0.27 13.32 2.62 44.24 0.12 13.44 16 3 H 0.02 1.30 6.91 -2.39 -0.02 1.28 16 4 C -0.54 -29.07 7.99 25.60 0.20 -28.87 16 5 H 0.06 3.06 7.33 -2.91 -0.02 3.04 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -51.13 11.32 21.45 0.24 -50.89 16 8 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 N -1.00 -40.02 3.12 -520.46 -1.62 -41.64 16 13 C 0.09 3.02 9.65 127.77 1.23 4.25 16 14 S 2.80 107.20 6.14 -56.49 -0.35 106.85 16 15 O -1.02 -48.31 16.70 -128.00 -2.14 -50.45 16 16 O -1.01 -40.73 16.21 -128.00 -2.07 -42.80 16 17 N -1.12 -30.48 6.05 -187.48 -1.14 -31.61 16 18 C 0.11 2.37 6.04 86.38 0.52 2.89 16 19 C -0.11 -1.75 4.66 30.60 0.14 -1.61 16 20 C -0.08 -1.06 1.85 -11.10 -0.02 -1.08 16 21 H 0.07 1.04 7.17 -2.38 -0.02 1.02 16 22 C -0.12 -1.31 4.84 30.21 0.15 -1.16 16 23 C -0.15 -1.54 5.92 31.39 0.19 -1.35 16 24 C 0.05 0.65 6.01 87.15 0.52 1.17 16 25 N -0.68 -9.33 6.91 -527.70 -3.65 -12.97 16 26 C 0.05 0.72 5.87 83.94 0.49 1.21 16 27 C -0.15 -2.03 4.70 28.92 0.14 -1.90 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 30 H 0.04 1.74 7.67 -2.39 -0.02 1.72 16 31 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.55 7.02 -2.39 -0.02 2.54 16 34 H 0.07 2.23 7.02 -2.39 -0.02 2.21 16 35 H 0.42 10.01 8.65 -96.75 -0.84 9.18 16 36 H 0.07 1.58 7.75 -2.39 -0.02 1.56 16 37 H 0.07 1.47 6.27 -2.39 -0.01 1.46 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.13 7.98 -2.39 -0.02 1.11 16 40 H 0.07 0.75 7.61 -2.39 -0.02 0.74 16 41 H 0.06 0.68 6.79 -2.39 -0.02 0.67 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.80 6.51 -2.39 -0.02 0.79 16 46 H 0.34 4.20 7.35 -89.69 -0.66 3.54 16 47 H 0.07 0.95 7.24 -2.39 -0.02 0.94 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 1.08 5.98 -2.39 -0.01 1.07 16 50 H 0.07 0.89 7.59 -2.39 -0.02 0.87 16 Total: -1.00 -67.55 385.97 -4.48 -72.02 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.56 Total: 23.04 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.78 Total: -16.76 kcal Atomic # 7 Polarization: -130.95 SS G_CDS: -6.16 Total: -137.11 kcal Atomic # 8 Polarization: -89.03 SS G_CDS: -4.21 Total: -93.25 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 107.20 SS G_CDS: -0.35 Total: 106.85 kcal Total: -67.55 -4.48 -72.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.517 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds