Wall clock time and date at job start Tue Mar 31 2020 17:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 C 1.50697 * 109.47096 * 119.99543 * 2 1 3 5 5 H 1.08006 * 119.99864 * 120.00164 * 4 2 1 6 6 C 1.37874 * 120.00166 * 300.00648 * 4 2 1 7 7 N 1.31509 * 120.00242 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46953 * 89.99696 * 8 6 4 10 10 H 1.48492 * 109.47182 * 209.99454 * 8 6 4 11 11 H 1.48500 * 109.47333 * 330.00099 * 8 6 4 12 12 N 1.46496 * 109.47246 * 240.00184 * 2 1 3 13 13 C 1.46505 * 119.99655 * 299.99789 * 12 2 1 14 14 S 1.65599 * 120.00549 * 119.99920 * 12 2 1 15 15 O 1.42101 * 106.39892 * 336.45986 * 14 12 2 16 16 O 1.42096 * 106.40654 * 203.53967 * 14 12 2 17 17 N 1.65596 * 107.21794 * 89.99545 * 14 12 2 18 18 C 1.46503 * 120.00046 * 65.00571 * 17 14 12 19 19 C 1.52996 * 109.47529 * 165.00019 * 18 17 14 20 20 C 1.52999 * 109.47389 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.02632 * 306.05374 * 20 19 18 22 22 C 1.54515 * 109.03908 * 187.17209 * 20 19 18 23 23 C 1.50535 * 108.85246 * 162.17398 * 22 20 19 24 24 C 1.53917 * 112.93464 * 91.76437 * 23 22 20 25 25 N 1.47945 * 113.32933 * 317.75344 * 24 23 22 26 26 C 1.44309 * 113.65440 * 318.14184 * 25 24 23 27 27 C 1.45876 * 109.03661 * 64.99753 * 20 19 18 28 28 H 1.08999 * 109.46771 * 60.00287 * 1 2 3 29 29 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47525 * 300.00349 * 1 2 3 31 31 H 0.96995 * 120.00563 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47106 * 269.99977 * 13 12 2 33 33 H 1.08995 * 109.47421 * 30.00313 * 13 12 2 34 34 H 1.09006 * 109.46969 * 150.00120 * 13 12 2 35 35 H 0.96996 * 120.00400 * 245.00383 * 17 14 12 36 36 H 1.08999 * 109.46824 * 44.99814 * 18 17 14 37 37 H 1.08998 * 109.47035 * 284.99944 * 18 17 14 38 38 H 1.08999 * 109.46998 * 59.99549 * 19 18 17 39 39 H 1.08998 * 109.46900 * 300.00007 * 19 18 17 40 40 H 1.08998 * 109.57403 * 281.98530 * 22 20 19 41 41 H 1.08998 * 109.57232 * 42.36231 * 22 20 19 42 42 H 1.09005 * 108.78789 * 212.65328 * 23 22 20 43 43 H 1.08998 * 108.79240 * 330.98255 * 23 22 20 44 44 H 1.08996 * 108.71211 * 78.75162 * 24 23 22 45 45 H 1.09003 * 108.70862 * 196.76363 * 24 23 22 46 46 H 1.00906 * 111.00212 * 84.09487 * 25 24 23 47 47 H 1.09003 * 109.68931 * 335.67326 * 26 25 24 48 48 H 1.08998 * 109.68773 * 215.09313 * 26 25 24 49 49 H 1.09004 * 108.85062 * 302.88363 * 27 20 19 50 50 H 1.08999 * 108.84534 * 61.24655 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1142 -2.2863 15 8 2.6904 1.4973 -2.1193 16 8 2.8228 -0.5646 -3.5259 17 7 4.5437 -0.1041 -1.8180 18 6 5.1358 -1.4440 -1.8415 19 6 6.6578 -1.3311 -1.7334 20 6 7.2760 -2.7304 -1.7573 21 1 6.8104 -3.3379 -0.9814 22 6 8.7895 -2.6178 -1.4668 23 6 9.3085 -3.9707 -1.0589 24 6 9.8378 -4.7933 -2.2472 25 7 8.9773 -4.7089 -3.4478 26 6 7.5660 -4.7780 -3.1546 27 6 7.0207 -3.3412 -3.0571 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7093 1.1618 3.4843 32 1 2.4158 -2.7377 -0.9716 33 1 0.6905 -2.3002 -0.9846 34 1 1.6239 -2.2852 -2.5002 35 1 5.0733 0.6550 -1.5282 36 1 4.8737 -1.9407 -2.7757 37 1 4.7541 -2.0247 -1.0017 38 1 6.9198 -0.8343 -0.7992 39 1 7.0395 -0.7504 -2.5731 40 1 9.3096 -2.2825 -2.3641 41 1 8.9542 -1.9047 -0.6591 42 1 10.1155 -3.8346 -0.3389 43 1 8.5020 -4.5265 -0.5806 44 1 10.8340 -4.4341 -2.5050 45 1 9.9131 -5.8375 -1.9437 46 1 9.1939 -3.8865 -3.9909 47 1 7.4126 -5.2943 -2.2070 48 1 7.0510 -5.3129 -3.9525 49 1 5.9450 -3.3603 -3.2322 50 1 7.4904 -2.7332 -3.8303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575911306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:40 Heat of formation + Delta-G solvation = -92.996082 kcal Electronic energy + Delta-G solvation = -28513.723504 eV Core-core repulsion = 24701.825681 eV Total energy + Delta-G solvation = -3811.897822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77125 -36.73720 -36.22757 -36.04382 -35.25708 -33.62243 -32.61925 -32.60299 -29.08348 -28.83577 -25.91508 -25.57651 -25.15786 -24.69360 -22.46239 -20.81881 -20.57766 -20.21322 -18.78176 -17.23082 -16.77840 -16.47509 -16.35141 -15.89216 -15.45958 -15.36369 -15.08756 -14.79145 -14.34037 -13.94884 -13.49688 -13.38964 -13.28625 -13.09689 -12.85604 -12.81007 -12.69531 -12.03672 -11.93376 -11.77067 -11.66637 -11.55230 -11.45687 -11.38450 -11.35559 -11.16599 -11.02557 -10.91878 -10.86493 -10.76671 -10.62666 -10.46488 -10.37545 -10.26968 -10.04607 -9.36565 -9.08476 -8.56260 -8.50498 -7.97553 -6.11418 -4.19881 1.26790 3.21694 3.29347 3.30673 3.50234 4.06509 4.12985 4.29057 4.33188 4.44743 4.62964 4.79842 4.87331 4.94165 5.03710 5.11995 5.18587 5.19316 5.26704 5.39199 5.42892 5.47608 5.56626 5.63828 5.69616 5.73842 5.81737 5.86107 5.92051 5.96202 6.00009 6.08867 6.16926 6.25067 6.26336 6.35165 6.63424 6.82834 6.85851 6.91079 7.08610 7.15846 7.24815 7.52223 7.62246 7.76885 8.02844 8.24490 8.83227 9.46513 10.93676 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003620 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.939658 B = 7732.118883 C = 9211.024122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.990 5.990 13 C 0.099 3.901 14 S 2.784 3.216 15 O -0.983 6.983 16 O -1.000 7.000 17 N -1.129 6.129 18 C 0.120 3.880 19 C -0.122 4.122 20 C -0.085 4.085 21 H 0.074 0.926 22 C -0.113 4.113 23 C -0.154 4.154 24 C 0.061 3.939 25 N -0.696 5.696 26 C 0.066 3.934 27 C -0.156 4.156 28 H 0.013 0.987 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.341 0.659 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.381 -8.832 -8.191 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.832 5.832 13 C -0.048 4.048 14 S 2.792 3.208 15 O -0.967 6.967 16 O -0.984 6.984 17 N -0.887 5.887 18 C -0.006 4.006 19 C -0.161 4.161 20 C -0.105 4.105 21 H 0.092 0.908 22 C -0.150 4.150 23 C -0.193 4.193 24 C -0.068 4.068 25 N -0.326 5.326 26 C -0.064 4.064 27 C -0.194 4.194 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.160 0.840 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.909 -9.058 -8.999 18.880 hybrid contribution 0.487 0.570 1.966 2.104 sum 14.396 -8.488 -7.033 18.131 Atomic orbital electron populations 1.22068 0.98048 0.99614 1.00838 1.18715 0.91825 0.92706 0.80232 0.92396 1.21373 1.31770 1.13027 0.90168 0.92025 1.24925 0.94980 0.94994 0.98982 1.69874 1.36253 1.22645 1.23799 0.86539 0.78575 0.79913 0.82570 1.20728 1.21171 1.19963 1.57652 1.64535 1.21357 1.39705 1.21276 1.01850 0.81839 0.99813 1.01719 0.72643 0.73083 0.73328 1.93593 1.83680 1.32528 1.86896 1.93521 1.86096 1.76427 1.42353 1.56005 1.32342 1.14944 1.85426 1.21279 0.93918 0.83620 1.01823 1.21889 0.94272 0.97046 1.02878 1.20194 0.95485 0.96364 0.98408 0.90776 1.21426 0.95036 0.97021 1.01541 1.21951 1.01484 0.96641 0.99252 1.22343 0.95930 0.99735 0.88791 1.59608 1.05299 1.46550 1.21124 1.21743 0.87769 0.95374 1.01501 1.21382 1.03036 0.97372 0.97660 0.96811 0.94811 0.88864 0.92641 0.94005 0.90629 0.92067 0.75578 0.90834 0.91623 0.90987 0.91392 0.92102 0.91427 0.91761 0.91820 0.91709 0.91420 0.83966 0.91293 0.90824 0.90773 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 2 C 0.27 6.51 2.62 -69.08 -0.18 6.33 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.33 8.37 -34.44 -0.29 -13.62 16 5 H 0.06 1.52 7.65 -52.48 -0.40 1.12 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.99 -20.25 3.12 -115.85 -0.36 -20.61 16 13 C 0.10 1.73 9.90 59.85 0.59 2.32 16 14 S 2.78 53.96 6.14 -107.50 -0.66 53.30 16 15 O -0.98 -22.38 16.70 -57.17 -0.95 -23.34 16 16 O -1.00 -20.16 16.21 -57.17 -0.93 -21.09 16 17 N -1.13 -17.46 6.05 -10.61 -0.06 -17.53 16 18 C 0.12 1.57 5.95 -4.04 -0.02 1.54 16 19 C -0.12 -1.26 4.75 -26.73 -0.13 -1.38 16 20 C -0.09 -0.76 1.77 -93.20 -0.16 -0.93 16 21 H 0.07 0.71 7.58 -51.93 -0.39 0.32 16 22 C -0.11 -0.89 4.98 -27.17 -0.14 -1.02 16 23 C -0.15 -1.15 5.28 -27.49 -0.15 -1.29 16 24 C 0.06 0.45 6.44 -2.77 -0.02 0.43 16 25 N -0.70 -5.61 6.55 -113.78 -0.74 -6.35 16 26 C 0.07 0.55 6.27 -4.70 -0.03 0.52 16 27 C -0.16 -1.33 4.38 -29.59 -0.13 -1.46 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.33 6.43 -51.93 -0.33 0.99 16 34 H 0.06 0.98 7.02 -51.93 -0.36 0.61 16 35 H 0.41 5.74 8.65 -34.47 -0.30 5.45 16 36 H 0.07 0.94 6.06 -51.93 -0.31 0.63 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 41 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.52 6.65 -51.93 -0.35 0.18 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.34 2.52 7.57 -39.29 -0.30 2.23 16 47 H 0.07 0.59 6.79 -51.93 -0.35 0.24 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.69 6.19 -51.93 -0.32 0.37 16 50 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -30.64 386.46 -11.26 -41.90 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.56 Total: 6.47 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.41 Total: -10.13 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -0.54 Total: -68.17 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -1.88 Total: -44.43 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 53.96 SS G_CDS: -0.66 Total: 53.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.64 -11.26 -41.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.095 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds