Wall clock time and date at job start Tue Mar 31 2020 17:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 C 1.50697 * 109.47096 * 119.99543 * 2 1 3 5 5 H 1.08006 * 119.99864 * 120.00164 * 4 2 1 6 6 C 1.37874 * 120.00166 * 300.00648 * 4 2 1 7 7 N 1.31509 * 120.00242 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46953 * 89.99696 * 8 6 4 10 10 H 1.48492 * 109.47182 * 209.99454 * 8 6 4 11 11 H 1.48500 * 109.47333 * 330.00099 * 8 6 4 12 12 N 1.46496 * 109.47246 * 240.00184 * 2 1 3 13 13 C 1.46505 * 119.99655 * 299.99789 * 12 2 1 14 14 S 1.65599 * 120.00549 * 119.99920 * 12 2 1 15 15 O 1.42101 * 106.39892 * 336.45986 * 14 12 2 16 16 O 1.42096 * 106.40654 * 203.53967 * 14 12 2 17 17 N 1.65596 * 107.21794 * 89.99545 * 14 12 2 18 18 C 1.46503 * 120.00046 * 65.00571 * 17 14 12 19 19 C 1.52996 * 109.47529 * 165.00019 * 18 17 14 20 20 C 1.52999 * 109.47389 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.02632 * 306.05374 * 20 19 18 22 22 C 1.54515 * 109.03908 * 187.17209 * 20 19 18 23 23 C 1.50535 * 108.85246 * 162.17398 * 22 20 19 24 24 C 1.53917 * 112.93464 * 91.76437 * 23 22 20 25 25 N 1.47945 * 113.32933 * 317.75344 * 24 23 22 26 26 C 1.44309 * 113.65440 * 318.14184 * 25 24 23 27 27 C 1.45876 * 109.03661 * 64.99753 * 20 19 18 28 28 H 1.08999 * 109.46771 * 60.00287 * 1 2 3 29 29 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47525 * 300.00349 * 1 2 3 31 31 H 0.96995 * 120.00563 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47106 * 269.99977 * 13 12 2 33 33 H 1.08995 * 109.47421 * 30.00313 * 13 12 2 34 34 H 1.09006 * 109.46969 * 150.00120 * 13 12 2 35 35 H 0.96996 * 120.00400 * 245.00383 * 17 14 12 36 36 H 1.08999 * 109.46824 * 44.99814 * 18 17 14 37 37 H 1.08998 * 109.47035 * 284.99944 * 18 17 14 38 38 H 1.08999 * 109.46998 * 59.99549 * 19 18 17 39 39 H 1.08998 * 109.46900 * 300.00007 * 19 18 17 40 40 H 1.08998 * 109.57403 * 281.98530 * 22 20 19 41 41 H 1.08998 * 109.57232 * 42.36231 * 22 20 19 42 42 H 1.09005 * 108.78789 * 212.65328 * 23 22 20 43 43 H 1.08998 * 108.79240 * 330.98255 * 23 22 20 44 44 H 1.08996 * 108.71211 * 78.75162 * 24 23 22 45 45 H 1.09003 * 108.70862 * 196.76363 * 24 23 22 46 46 H 1.00906 * 111.00212 * 84.09487 * 25 24 23 47 47 H 1.09003 * 109.68931 * 335.67326 * 26 25 24 48 48 H 1.08998 * 109.68773 * 215.09313 * 26 25 24 49 49 H 1.09004 * 108.85062 * 302.88363 * 27 20 19 50 50 H 1.08999 * 108.84534 * 61.24655 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1142 -2.2863 15 8 2.6904 1.4973 -2.1193 16 8 2.8228 -0.5646 -3.5259 17 7 4.5437 -0.1041 -1.8180 18 6 5.1358 -1.4440 -1.8415 19 6 6.6578 -1.3311 -1.7334 20 6 7.2760 -2.7304 -1.7573 21 1 6.8104 -3.3379 -0.9814 22 6 8.7895 -2.6178 -1.4668 23 6 9.3085 -3.9707 -1.0589 24 6 9.8378 -4.7933 -2.2472 25 7 8.9773 -4.7089 -3.4478 26 6 7.5660 -4.7780 -3.1546 27 6 7.0207 -3.3412 -3.0571 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7093 1.1618 3.4843 32 1 2.4158 -2.7377 -0.9716 33 1 0.6905 -2.3002 -0.9846 34 1 1.6239 -2.2852 -2.5002 35 1 5.0733 0.6550 -1.5282 36 1 4.8737 -1.9407 -2.7757 37 1 4.7541 -2.0247 -1.0017 38 1 6.9198 -0.8343 -0.7992 39 1 7.0395 -0.7504 -2.5731 40 1 9.3096 -2.2825 -2.3641 41 1 8.9542 -1.9047 -0.6591 42 1 10.1155 -3.8346 -0.3389 43 1 8.5020 -4.5265 -0.5806 44 1 10.8340 -4.4341 -2.5050 45 1 9.9131 -5.8375 -1.9437 46 1 9.1939 -3.8865 -3.9909 47 1 7.4126 -5.2943 -2.2070 48 1 7.0510 -5.3129 -3.9525 49 1 5.9450 -3.3603 -3.2322 50 1 7.4904 -2.7332 -3.8303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575911306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:39 Heat of formation + Delta-G solvation = -115.206661 kcal Electronic energy + Delta-G solvation = -28514.686627 eV Core-core repulsion = 24701.825681 eV Total energy + Delta-G solvation = -3812.860945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45845 -38.35511 -37.90648 -37.09883 -36.91228 -34.54131 -34.50934 -33.24117 -30.91727 -29.72933 -27.30980 -26.97544 -26.57620 -25.46658 -23.32786 -22.59598 -21.36526 -20.85141 -20.26250 -18.80397 -18.34562 -18.27112 -17.46650 -16.94058 -16.73321 -16.22622 -16.09890 -15.86373 -15.65345 -15.16658 -14.82801 -14.75802 -14.56920 -14.17965 -13.87253 -13.69191 -13.65624 -13.46453 -13.35709 -13.22875 -13.17237 -12.97858 -12.91860 -12.78613 -12.72241 -12.61634 -12.33116 -12.22195 -12.13325 -12.03590 -11.86449 -11.53244 -11.48330 -11.35624 -11.21467 -11.08150 -10.50298 -10.39337 -9.65726 -9.18039 -8.09207 -6.24186 -0.27805 1.44395 1.46372 1.55300 2.01468 2.45308 2.61854 3.19262 3.41747 3.47099 3.63191 3.70743 3.94594 4.08439 4.12930 4.18939 4.28471 4.28720 4.44023 4.52348 4.60202 4.68912 4.72919 4.77084 4.79585 4.83346 4.85194 4.95591 5.01505 5.03314 5.09200 5.15673 5.17310 5.17647 5.24668 5.25686 5.29914 5.33976 5.43428 5.54361 5.60992 5.70261 5.85263 6.05717 6.18392 6.29663 6.30499 6.58528 6.85297 7.45752 8.95406 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003620 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.939658 B = 7732.118883 C = 9211.024122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.527 4.527 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.997 5.997 13 C 0.093 3.907 14 S 2.798 3.202 15 O -1.021 7.021 16 O -1.007 7.007 17 N -1.119 6.119 18 C 0.114 3.886 19 C -0.115 4.115 20 C -0.080 4.080 21 H 0.067 0.933 22 C -0.109 4.109 23 C -0.150 4.150 24 C 0.063 3.937 25 N -0.702 5.702 26 C 0.070 3.930 27 C -0.152 4.152 28 H 0.019 0.981 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.419 0.581 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.346 0.654 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.051 -10.408 -8.262 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.567 4.567 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.838 5.838 13 C -0.052 4.052 14 S 2.807 3.193 15 O -1.005 7.005 16 O -0.990 6.990 17 N -0.882 5.882 18 C -0.012 4.012 19 C -0.154 4.154 20 C -0.099 4.099 21 H 0.086 0.914 22 C -0.146 4.146 23 C -0.189 4.189 24 C -0.067 4.067 25 N -0.332 5.332 26 C -0.060 4.060 27 C -0.191 4.191 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.165 0.835 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.582 -10.652 -9.089 20.949 hybrid contribution 0.005 1.040 1.921 2.184 sum 15.586 -9.612 -7.168 19.665 Atomic orbital electron populations 1.21961 0.97962 1.00137 0.99988 1.18379 0.91918 0.91332 0.81465 0.95841 1.21625 1.31427 1.13004 0.90616 0.91333 1.25688 0.95222 0.95626 1.01851 1.70014 1.37489 1.24063 1.24295 0.85558 0.77800 0.79257 0.78980 1.20488 1.21403 1.18849 1.57542 1.65368 1.22463 1.38456 1.21474 1.02300 0.80382 1.01080 1.01111 0.73205 0.71930 0.73040 1.93538 1.84693 1.34957 1.87317 1.93507 1.86603 1.76317 1.42611 1.55709 1.30864 1.16467 1.85121 1.21514 0.95675 0.82043 1.01958 1.21858 0.92183 0.98140 1.03260 1.20151 0.96145 0.95233 0.98398 0.91437 1.21389 0.94119 0.97297 1.01828 1.21904 1.01418 0.96214 0.99405 1.22348 0.96244 0.99625 0.88453 1.59603 1.05142 1.46902 1.21591 1.21675 0.88026 0.95048 1.01241 1.21344 1.02550 0.97657 0.97554 0.96190 0.93515 0.91181 0.92773 0.92334 0.90816 0.90456 0.74607 0.90352 0.91989 0.90963 0.90567 0.91439 0.91505 0.91020 0.92670 0.90681 0.91694 0.83473 0.91676 0.90975 0.91563 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.73 8.95 71.98 0.64 -6.09 16 2 C 0.27 13.35 2.62 44.25 0.12 13.46 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.53 -26.55 8.37 25.60 0.21 -26.33 16 5 H 0.07 3.29 7.65 -2.91 -0.02 3.26 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -50.93 11.32 21.45 0.24 -50.69 16 8 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 12 N -1.00 -40.19 3.12 -520.44 -1.62 -41.81 16 13 C 0.09 3.10 9.90 127.77 1.27 4.37 16 14 S 2.80 107.30 6.14 -56.49 -0.35 106.96 16 15 O -1.02 -47.15 16.70 -128.00 -2.14 -49.29 16 16 O -1.01 -39.43 16.21 -128.00 -2.07 -41.51 16 17 N -1.12 -33.54 6.05 -187.49 -1.14 -34.67 16 18 C 0.11 2.79 5.95 86.38 0.51 3.30 16 19 C -0.12 -2.16 4.75 30.59 0.15 -2.01 16 20 C -0.08 -1.28 1.77 -12.46 -0.02 -1.30 16 21 H 0.07 1.19 7.58 -2.39 -0.02 1.17 16 22 C -0.11 -1.48 4.98 30.31 0.15 -1.33 16 23 C -0.15 -1.94 5.28 30.11 0.16 -1.78 16 24 C 0.06 0.79 6.44 86.41 0.56 1.34 16 25 N -0.70 -10.01 6.55 -513.88 -3.36 -13.37 16 26 C 0.07 1.05 6.27 87.12 0.55 1.60 16 27 C -0.15 -2.34 4.38 28.74 0.13 -2.21 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 2.05 6.66 -2.39 -0.02 2.03 16 30 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.47 6.43 -2.39 -0.02 2.46 16 34 H 0.08 2.32 7.02 -2.38 -0.02 2.30 16 35 H 0.42 11.35 8.65 -96.75 -0.84 10.51 16 36 H 0.08 1.87 6.06 -2.39 -0.01 1.85 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.37 8.00 -2.39 -0.02 1.35 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 0.85 7.44 -2.39 -0.02 0.83 16 41 H 0.07 0.94 7.92 -2.39 -0.02 0.92 16 42 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.05 0.81 6.65 -2.39 -0.02 0.80 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.35 4.39 7.57 -89.69 -0.68 3.71 16 47 H 0.06 1.03 6.79 -2.39 -0.02 1.01 16 48 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.13 6.19 -2.38 -0.01 1.11 16 50 H 0.07 0.99 7.51 -2.39 -0.02 0.98 16 Total: -1.00 -64.35 386.46 -4.13 -68.47 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.58 Total: 28.62 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 4.86 Total: -15.72 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -5.88 Total: -140.54 kcal Atomic # 8 Polarization: -86.59 SS G_CDS: -4.21 Total: -90.80 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: 107.30 SS G_CDS: -0.35 Total: 106.96 kcal Total: -64.35 -4.13 -68.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.733 kcal (2) G-P(sol) polarization free energy of solvation -64.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds