Wall clock time and date at job start Tue Mar 31 2020 17:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46988 * 179.97438 * 20 19 18 22 22 N 1.46896 * 109.47599 * 180.02562 * 21 20 19 23 23 C 1.46901 * 110.99916 * 66.03932 * 22 21 20 24 24 C 1.46901 * 111.00442 * 189.99857 * 22 21 20 25 25 C 1.52999 * 117.49976 * 243.74318 * 24 22 21 26 26 C 1.52998 * 117.49780 * 175.08237 * 24 22 21 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 35 35 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 36 36 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 37 37 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 38 38 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 39 39 H 1.08998 * 109.47436 * 299.99584 * 20 19 18 40 40 H 1.08998 * 109.47371 * 60.00375 * 20 19 18 41 41 H 1.08999 * 109.47181 * 300.00234 * 21 20 19 42 42 H 1.09004 * 109.47142 * 59.99999 * 21 20 19 43 43 H 1.09007 * 109.47146 * 60.00759 * 23 22 21 44 44 H 1.09004 * 109.46789 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47408 * 300.00813 * 23 22 21 46 46 H 1.08992 * 115.54556 * 29.41878 * 24 22 21 47 47 H 1.09001 * 117.49585 * 0.02562 * 25 24 22 48 48 H 1.08993 * 117.49307 * 145.01779 * 25 24 22 49 49 H 1.09000 * 117.49970 * 214.97764 * 26 24 22 50 50 H 1.08999 * 117.50175 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2376 -0.0739 6.3585 21 6 -0.7795 0.7688 7.5149 22 7 -1.5914 -0.0777 8.3992 23 6 -0.7623 -1.0918 9.0642 24 6 -2.3195 0.7347 9.3830 25 6 -1.9736 0.5338 10.8598 26 6 -3.3024 0.0126 10.3067 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.9053 1.7753 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7669 -0.8422 4.6782 37 1 1.4406 1.2293 6.0017 38 1 -0.0075 1.6149 5.0412 39 1 -1.0697 -0.4950 5.7943 40 1 0.3780 -0.8812 6.7551 41 1 0.0529 1.1896 8.0790 42 1 -1.3950 1.5764 7.1187 43 1 0.0059 -0.5992 9.6605 44 1 -1.3884 -1.7049 9.7125 45 1 -0.2891 -1.7239 8.3129 46 1 -2.5802 1.7424 9.0597 47 1 -1.2055 -0.2009 11.1014 48 1 -2.0072 1.4094 11.5081 49 1 -4.2096 0.5455 10.5915 50 1 -3.4092 -1.0652 10.1842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622215730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:03 Heat of formation + Delta-G solvation = -49.866666 kcal Electronic energy + Delta-G solvation = -27303.165063 eV Core-core repulsion = 23493.137473 eV Total energy + Delta-G solvation = -3810.027591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.33601 -36.84020 -36.47669 -36.11241 -35.18985 -34.69116 -32.55888 -31.91987 -29.07589 -28.01376 -26.29849 -25.56255 -25.10696 -22.91409 -22.66910 -21.32156 -20.70813 -20.37689 -18.69323 -17.28714 -17.05556 -16.76369 -16.42624 -16.11503 -15.71585 -15.50624 -14.97371 -14.59075 -14.34106 -14.27006 -13.48323 -13.45389 -13.15367 -12.88058 -12.78422 -12.65684 -12.33001 -12.15065 -11.97053 -11.82048 -11.72349 -11.66309 -11.50959 -11.44233 -11.32175 -11.23016 -11.18382 -10.96822 -10.94424 -10.78187 -10.77168 -10.59020 -10.44684 -10.26156 -9.99520 -9.30167 -9.19829 -8.52013 -8.43412 -7.95243 -6.05317 -4.11634 1.25260 3.23364 3.31877 3.36015 3.39348 3.53026 3.65662 4.16025 4.40531 4.42141 4.52407 4.60999 4.64113 4.72611 4.81862 4.99207 5.04985 5.08473 5.21033 5.23744 5.26026 5.29547 5.36348 5.41666 5.48925 5.55658 5.58857 5.63464 5.65987 5.72421 5.78170 5.99320 6.07599 6.15288 6.20862 6.39224 6.64482 6.64849 6.71813 6.79223 6.81573 7.03895 7.19042 7.51535 7.65941 7.81383 8.06441 8.30010 8.90314 9.53888 11.00331 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002208 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.512875 B =12677.337418 C =13172.774532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.781 3.219 15 O -0.998 6.998 16 O -0.976 6.976 17 N -1.135 6.135 18 C 0.122 3.878 19 C -0.124 4.124 20 C -0.117 4.117 21 C 0.057 3.943 22 N -0.511 5.511 23 C 0.016 3.984 24 C 0.021 3.979 25 C -0.221 4.221 26 C -0.171 4.171 27 H 0.033 0.967 28 H 0.011 0.989 29 H 0.092 0.908 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 -0.654 23.364 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.037 4.037 14 S 2.789 3.211 15 O -0.981 6.981 16 O -0.960 6.960 17 N -0.893 5.893 18 C -0.005 4.005 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.232 5.232 23 C -0.132 4.132 24 C -0.089 4.089 25 C -0.260 4.260 26 C -0.209 4.209 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.135 0.865 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.115 0.885 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.761 -0.947 22.890 23.886 hybrid contribution 0.339 0.343 -0.303 0.570 sum -6.422 -0.603 22.587 23.490 Atomic orbital electron populations 1.22114 0.98297 0.99674 1.00612 1.18719 0.91252 0.92990 0.80497 0.92364 1.21299 1.31550 1.12971 0.90062 0.92027 1.24917 0.95004 0.95039 0.99009 1.69851 1.36541 1.22719 1.23841 0.86547 0.79336 0.79556 0.81887 1.21258 1.20183 1.20263 1.57676 1.70017 1.19767 1.35821 1.21155 1.01711 0.82204 0.98655 1.01892 0.73626 0.73146 0.72400 1.93530 1.69177 1.60824 1.74585 1.93612 1.74422 1.56000 1.71921 1.56206 1.62633 1.17311 1.53176 1.21178 0.94835 0.93345 0.91140 1.21725 0.99748 0.98791 0.96073 1.21562 0.99801 0.98322 0.95833 1.22175 0.95701 0.95435 0.93735 1.61844 1.28324 1.14403 1.18642 1.22564 0.96202 0.95454 0.98993 1.22683 1.01405 0.97563 0.87218 1.23573 1.00019 1.04181 0.98252 1.23061 0.93521 1.01165 1.03146 0.94798 0.97032 0.88919 0.92680 0.93307 0.93419 0.90990 0.75618 0.91725 0.90873 0.91362 0.91027 0.90478 0.91530 0.94553 0.90496 0.95048 0.91393 0.90621 0.86478 0.88249 0.88911 0.88502 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.95 37.16 0.33 -2.98 16 2 C 0.27 6.54 2.62 -69.09 -0.18 6.36 16 3 H 0.06 1.58 6.91 -51.92 -0.36 1.22 16 4 C -0.52 -14.01 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.99 -20.33 3.12 -115.86 -0.36 -20.69 16 13 C 0.11 1.92 9.53 59.85 0.57 2.49 16 14 S 2.78 53.87 6.09 -107.50 -0.66 53.22 16 15 O -1.00 -20.58 16.68 -57.17 -0.95 -21.53 16 16 O -0.98 -22.67 16.70 -57.17 -0.95 -23.63 16 17 N -1.13 -16.21 6.05 -10.61 -0.06 -16.27 16 18 C 0.12 1.42 6.25 -4.04 -0.03 1.40 16 19 C -0.12 -1.11 5.36 -26.73 -0.14 -1.25 16 20 C -0.12 -0.95 5.14 -26.73 -0.14 -1.08 16 21 C 0.06 0.44 4.93 -3.83 -0.02 0.42 16 22 N -0.51 -4.16 4.97 -234.89 -1.17 -5.33 16 23 C 0.02 0.11 7.95 60.07 0.48 0.59 16 24 C 0.02 0.15 6.11 -67.71 -0.41 -0.26 16 25 C -0.22 -1.40 9.51 -26.69 -0.25 -1.66 16 26 C -0.17 -1.11 9.99 -26.69 -0.27 -1.38 16 27 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 34 H 0.41 5.14 8.65 -34.47 -0.30 4.84 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.53 6.55 -51.93 -0.34 0.19 16 41 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 42 H 0.08 0.57 7.96 -51.93 -0.41 0.16 16 43 H 0.03 0.22 7.23 -51.93 -0.38 -0.16 16 44 H 0.07 0.45 6.63 -51.93 -0.34 0.11 16 45 H 0.08 0.53 6.47 -51.93 -0.34 0.20 16 46 H 0.12 0.78 7.93 -51.93 -0.41 0.37 16 47 H 0.10 0.63 5.90 -51.93 -0.31 0.32 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.66 7.56 -51.93 -0.39 0.26 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -32.31 401.51 -11.66 -43.98 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.72 Total: 2.22 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.44 Total: -10.03 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.97 Total: -66.47 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.91 Total: -45.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -0.66 Total: 53.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.31 -11.66 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622215730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.891 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds