Wall clock time and date at job start Tue Mar 31 2020 17:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46988 * 179.97438 * 20 19 18 22 22 N 1.46896 * 109.47599 * 180.02562 * 21 20 19 23 23 C 1.46901 * 110.99916 * 66.03932 * 22 21 20 24 24 C 1.46901 * 111.00442 * 189.99857 * 22 21 20 25 25 C 1.52999 * 117.49976 * 243.74318 * 24 22 21 26 26 C 1.52998 * 117.49780 * 175.08237 * 24 22 21 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 35 35 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 36 36 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 37 37 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 38 38 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 39 39 H 1.08998 * 109.47436 * 299.99584 * 20 19 18 40 40 H 1.08998 * 109.47371 * 60.00375 * 20 19 18 41 41 H 1.08999 * 109.47181 * 300.00234 * 21 20 19 42 42 H 1.09004 * 109.47142 * 59.99999 * 21 20 19 43 43 H 1.09007 * 109.47146 * 60.00759 * 23 22 21 44 44 H 1.09004 * 109.46789 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47408 * 300.00813 * 23 22 21 46 46 H 1.08992 * 115.54556 * 29.41878 * 24 22 21 47 47 H 1.09001 * 117.49585 * 0.02562 * 25 24 22 48 48 H 1.08993 * 117.49307 * 145.01779 * 25 24 22 49 49 H 1.09000 * 117.49970 * 214.97764 * 26 24 22 50 50 H 1.08999 * 117.50175 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2376 -0.0739 6.3585 21 6 -0.7795 0.7688 7.5149 22 7 -1.5914 -0.0777 8.3992 23 6 -0.7623 -1.0918 9.0642 24 6 -2.3195 0.7347 9.3830 25 6 -1.9736 0.5338 10.8598 26 6 -3.3024 0.0126 10.3067 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.9053 1.7753 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7669 -0.8422 4.6782 37 1 1.4406 1.2293 6.0017 38 1 -0.0075 1.6149 5.0412 39 1 -1.0697 -0.4950 5.7943 40 1 0.3780 -0.8812 6.7551 41 1 0.0529 1.1896 8.0790 42 1 -1.3950 1.5764 7.1187 43 1 0.0059 -0.5992 9.6605 44 1 -1.3884 -1.7049 9.7125 45 1 -0.2891 -1.7239 8.3129 46 1 -2.5802 1.7424 9.0597 47 1 -1.2055 -0.2009 11.1014 48 1 -2.0072 1.4094 11.5081 49 1 -4.2096 0.5455 10.5915 50 1 -3.4092 -1.0652 10.1842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622215730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:02 Heat of formation + Delta-G solvation = -73.060861 kcal Electronic energy + Delta-G solvation = -27304.170839 eV Core-core repulsion = 23493.137473 eV Total energy + Delta-G solvation = -3811.033366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.87996 -38.33006 -37.90237 -37.44352 -36.85711 -35.45328 -34.50766 -32.71243 -30.89063 -28.70587 -27.26736 -27.06008 -26.88814 -23.63862 -23.23475 -22.60010 -21.92793 -20.92263 -20.17352 -18.75902 -18.54895 -18.12651 -17.57966 -17.29097 -16.78163 -16.65448 -16.18276 -15.84456 -15.30931 -15.13100 -14.90507 -14.79710 -14.56335 -14.10446 -13.76283 -13.64092 -13.49748 -13.35357 -13.18239 -13.12377 -13.10148 -12.97091 -12.77677 -12.75043 -12.57469 -12.43243 -12.28169 -12.26832 -12.19139 -12.14409 -12.06344 -11.84291 -11.55117 -11.40328 -11.15296 -11.12946 -10.49793 -10.40145 -9.64669 -9.07670 -8.10301 -6.23504 -0.28005 1.43561 1.45500 1.52462 2.08047 2.44494 2.66277 2.73545 3.11050 3.17749 3.47740 3.84918 3.96492 4.01760 4.07625 4.08407 4.13279 4.24519 4.26052 4.39341 4.52015 4.63673 4.68549 4.74471 4.75077 4.78645 4.82964 4.85615 4.91999 4.96337 5.01496 5.03438 5.05935 5.11753 5.15336 5.21549 5.21896 5.24831 5.37018 5.47138 5.63252 5.73673 5.90176 6.08710 6.09804 6.16269 6.24114 6.32770 6.83787 7.45073 8.93481 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002208 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.512875 B =12677.337418 C =13172.774532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.267 1.267 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.797 3.203 15 O -1.011 7.011 16 O -1.020 7.020 17 N -1.119 6.119 18 C 0.113 3.887 19 C -0.115 4.115 20 C -0.110 4.110 21 C 0.060 3.940 22 N -0.523 5.523 23 C 0.016 3.984 24 C 0.008 3.992 25 C -0.216 4.216 26 C -0.171 4.171 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.421 0.579 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -1.262 24.687 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.806 3.194 15 O -0.994 6.994 16 O -1.004 7.004 17 N -0.882 5.882 18 C -0.013 4.013 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.068 4.068 22 N -0.245 5.245 23 C -0.132 4.132 24 C -0.101 4.101 25 C -0.255 4.255 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.603 -1.571 24.225 25.438 hybrid contribution 0.592 0.530 -0.603 0.998 sum -7.011 -1.041 23.621 24.662 Atomic orbital electron populations 1.21901 0.96732 1.00232 1.00513 1.18395 0.92307 0.91315 0.81158 0.95730 1.21627 1.31597 1.12997 0.91544 0.92667 1.25644 0.95292 0.95774 1.01657 1.69968 1.37246 1.23647 1.24359 0.85660 0.78393 0.79042 0.78816 1.20718 1.20589 1.19148 1.57554 1.69992 1.21024 1.35297 1.21356 1.01671 0.80420 1.00839 1.01172 0.73609 0.72292 0.72318 1.93508 1.69920 1.61346 1.74613 1.93549 1.76006 1.57425 1.73413 1.55758 1.62286 1.18107 1.52091 1.21472 0.94663 0.93547 0.91622 1.21661 1.00078 0.98623 0.95142 1.21483 0.99466 0.98217 0.95690 1.22131 0.95751 0.95356 0.93561 1.61847 1.28619 1.14807 1.19194 1.22568 0.96215 0.95347 0.99028 1.22790 1.01944 0.97848 0.87565 1.23590 0.99845 1.04372 0.97705 1.23106 0.93986 1.00977 1.02838 0.93810 0.94459 0.91599 0.92664 0.94205 0.90142 0.90335 0.74332 0.91011 0.90759 0.90795 0.90322 0.90881 0.91329 0.94475 0.90254 0.94910 0.91137 0.90600 0.86064 0.88315 0.88156 0.87569 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.95 71.98 0.64 -5.28 16 2 C 0.27 13.34 2.62 44.24 0.12 13.45 16 3 H 0.02 1.38 6.91 -2.38 -0.02 1.36 16 4 C -0.54 -29.23 8.37 25.60 0.21 -29.02 16 5 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.91 -51.34 11.32 21.45 0.24 -51.09 16 8 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 N -1.00 -40.33 3.12 -520.46 -1.62 -41.95 16 13 C 0.10 3.46 9.53 127.77 1.22 4.68 16 14 S 2.80 106.96 6.09 -56.49 -0.34 106.62 16 15 O -1.01 -40.66 16.68 -128.00 -2.14 -42.80 16 16 O -1.02 -48.16 16.70 -128.00 -2.14 -50.29 16 17 N -1.12 -30.23 6.05 -187.47 -1.14 -31.36 16 18 C 0.11 2.37 6.25 86.38 0.54 2.91 16 19 C -0.12 -1.78 5.36 30.59 0.16 -1.62 16 20 C -0.11 -1.54 5.14 30.59 0.16 -1.38 16 21 C 0.06 0.81 4.93 86.30 0.43 1.24 16 22 N -0.52 -7.70 4.97 -897.05 -4.46 -12.16 16 23 C 0.02 0.21 7.95 127.69 1.02 1.22 16 24 C 0.01 0.10 6.11 44.91 0.27 0.38 16 25 C -0.22 -2.41 9.51 30.62 0.29 -2.12 16 26 C -0.17 -1.99 9.99 30.62 0.31 -1.68 16 27 H 0.04 1.80 6.66 -2.39 -0.02 1.78 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 3.29 6.07 -2.39 -0.01 3.28 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 2.15 7.79 -2.38 -0.02 2.13 16 33 H 0.08 2.53 6.43 -2.39 -0.02 2.51 16 34 H 0.42 9.90 8.65 -96.74 -0.84 9.07 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.58 7.75 -2.38 -0.02 1.56 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.94 6.55 -2.39 -0.02 0.93 16 41 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 42 H 0.08 1.03 7.96 -2.38 -0.02 1.01 16 43 H 0.03 0.41 7.23 -2.38 -0.02 0.39 16 44 H 0.07 0.85 6.63 -2.38 -0.02 0.84 16 45 H 0.08 0.95 6.47 -2.39 -0.02 0.94 16 46 H 0.12 1.44 7.93 -2.39 -0.02 1.42 16 47 H 0.10 1.11 5.90 -2.39 -0.01 1.09 16 48 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.09 1.15 7.56 -2.39 -0.02 1.13 16 Total: -1.00 -68.92 401.51 -3.67 -72.59 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.08 Total: 20.80 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.81 Total: -15.90 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -6.98 Total: -136.57 kcal Atomic # 8 Polarization: -88.82 SS G_CDS: -4.27 Total: -93.09 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 106.96 SS G_CDS: -0.34 Total: 106.62 kcal Total: -68.92 -3.67 -72.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622215730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.467 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds