Wall clock time and date at job start Tue Mar 31 2020 17:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.53001 * 109.46682 * 165.00196 * 18 17 14 20 20 C 1.53008 * 109.46875 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47114 * 180.02562 * 20 19 18 22 22 N 1.46903 * 109.46796 * 179.97438 * 21 20 19 23 23 C 1.46898 * 111.00142 * 66.05086 * 22 21 20 24 24 C 1.46903 * 110.99497 * 189.99889 * 22 21 20 25 25 C 1.53000 * 117.49726 * 243.74430 * 24 22 21 26 26 C 1.53005 * 117.49431 * 175.08468 * 24 22 21 27 27 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 28 28 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 29 29 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 30 30 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 31 31 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 32 32 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 33 33 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 34 34 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 35 35 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 36 36 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 37 37 H 1.08997 * 109.47413 * 299.99887 * 19 18 17 38 38 H 1.08994 * 109.47046 * 60.00543 * 19 18 17 39 39 H 1.09003 * 109.46780 * 300.00386 * 20 19 18 40 40 H 1.08999 * 109.47246 * 59.99763 * 20 19 18 41 41 H 1.08997 * 109.47280 * 299.99572 * 21 20 19 42 42 H 1.09005 * 109.47399 * 60.00200 * 21 20 19 43 43 H 1.08993 * 109.47253 * 59.99321 * 23 22 21 44 44 H 1.09000 * 109.47230 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.46601 * 299.99462 * 23 22 21 46 46 H 1.08995 * 115.55189 * 29.42504 * 24 22 21 47 47 H 1.08995 * 117.50420 * 0.02562 * 25 24 22 48 48 H 1.09003 * 117.49643 * 145.02787 * 25 24 22 49 49 H 1.09000 * 117.50038 * 214.98067 * 26 24 22 50 50 H 1.09003 * 117.50360 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6576 -1.3311 -1.7338 20 6 7.2760 -2.7304 -1.7590 21 6 8.7979 -2.6175 -1.6504 22 7 9.3914 -3.9611 -1.6739 23 6 9.1810 -4.6068 -2.9765 24 6 10.8201 -3.9114 -1.3357 25 6 11.8167 -4.3417 -2.4139 26 6 11.5614 -5.2432 -1.2033 27 1 -0.3634 -1.0206 -0.1200 28 1 -0.3634 0.4065 0.9439 29 1 -0.3634 0.6142 -0.8239 30 1 1.9114 -1.9121 3.4376 31 1 0.7375 -2.1443 -1.9995 32 1 2.4627 -2.5818 -1.9866 33 1 1.5294 -2.5969 -0.4711 34 1 5.0733 0.6550 -1.5283 35 1 4.7539 -2.0248 -1.0020 36 1 4.8735 -1.9407 -2.7760 37 1 7.0394 -0.7505 -2.5735 38 1 6.9197 -0.8345 -0.7996 39 1 6.8942 -3.3115 -0.9194 40 1 7.0138 -3.2267 -2.6933 41 1 9.1799 -2.0364 -2.4896 42 1 9.0597 -2.1214 -0.7157 43 1 9.6446 -4.0061 -3.7589 44 1 9.6306 -5.5997 -2.9667 45 1 8.1119 -4.6936 -3.1705 46 1 11.1176 -3.1015 -0.6697 47 1 11.4124 -4.6614 -3.3743 48 1 12.7701 -3.8152 -2.4570 49 1 12.3470 -5.3094 -0.4506 50 1 10.9890 -6.1564 -1.3667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622215731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:05 Heat of formation + Delta-G solvation = -51.156439 kcal Electronic energy + Delta-G solvation = -27566.443455 eV Core-core repulsion = 23756.359935 eV Total energy + Delta-G solvation = -3810.083519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.27960 -36.90378 -36.53390 -36.28544 -35.35942 -34.64467 -32.61115 -31.87356 -29.79640 -27.96507 -26.25573 -25.68806 -24.67362 -22.86277 -22.61642 -21.24697 -20.62139 -20.32278 -18.77635 -17.57434 -17.23658 -17.02619 -16.78309 -16.17780 -15.82845 -15.47719 -14.86925 -14.53315 -14.27228 -13.98465 -13.71338 -13.41508 -13.24780 -12.96117 -12.78824 -12.62778 -12.31871 -12.12065 -12.06004 -11.97702 -11.79543 -11.74841 -11.67979 -11.54876 -11.51424 -11.43705 -11.32002 -11.20777 -10.92634 -10.76180 -10.69017 -10.53445 -10.45023 -10.05787 -9.80745 -9.30728 -9.17522 -8.45970 -8.42626 -8.06107 -6.53318 -4.15597 1.16281 3.27664 3.38573 3.41308 3.44727 3.59719 3.69295 4.05042 4.44411 4.46142 4.57938 4.66359 4.69474 4.78217 4.86102 4.95598 5.08884 5.10805 5.12454 5.26035 5.28526 5.35543 5.41198 5.46779 5.49773 5.55046 5.65041 5.66496 5.72160 5.77388 5.87481 6.04099 6.06090 6.14872 6.18098 6.27309 6.41016 6.49012 6.58656 6.68338 6.70916 6.77954 6.98576 7.21375 7.32433 7.52697 7.96359 8.30229 8.83053 9.49737 10.81918 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.002742 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.827443 B =10207.837609 C =11314.414441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.616 4.616 5 H 0.066 0.934 6 C 0.043 3.957 7 N -0.893 5.893 8 Si 1.024 2.976 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.985 5.985 13 C 0.106 3.894 14 S 2.784 3.216 15 O -0.996 6.996 16 O -0.985 6.985 17 N -1.127 6.127 18 C 0.123 3.877 19 C -0.123 4.123 20 C -0.116 4.116 21 C 0.058 3.942 22 N -0.511 5.511 23 C 0.016 3.984 24 C 0.022 3.978 25 C -0.221 4.221 26 C -0.171 4.171 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.270 0.730 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.118 0.882 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.149 -5.726 -11.300 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.654 4.654 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.525 5.525 8 Si 0.851 3.149 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.827 5.827 13 C -0.040 4.040 14 S 2.793 3.207 15 O -0.980 6.980 16 O -0.969 6.969 17 N -0.887 5.887 18 C -0.004 4.004 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.232 5.232 23 C -0.132 4.132 24 C -0.088 4.088 25 C -0.261 4.261 26 C -0.209 4.209 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.135 0.865 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.115 0.885 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.198 -4.501 -10.643 18.306 hybrid contribution 1.131 -0.746 -1.176 1.793 sum 15.328 -5.247 -11.819 20.054 Atomic orbital electron populations 1.22390 0.98434 1.00439 1.00023 1.18947 0.91323 0.92778 0.82758 0.93577 1.22132 1.41225 1.11301 0.90751 0.91613 1.25596 0.93290 1.05546 0.92018 1.70858 1.43376 1.06413 1.31891 0.84326 0.77867 0.76254 0.76407 1.20849 1.20539 1.19937 1.57486 1.64719 1.21406 1.39072 1.21219 0.99050 0.81788 1.01947 1.01729 0.72668 0.72996 0.73345 1.93545 1.86062 1.76318 1.42059 1.93577 1.83816 1.32604 1.86949 1.55951 1.32170 1.15137 1.85397 1.21183 0.93913 0.83439 1.01843 1.21711 0.94263 0.97384 1.02916 1.21557 0.93839 0.96938 1.03168 1.22172 0.94951 0.88537 1.01333 1.61843 1.11314 1.20137 1.29941 1.22558 1.02436 0.99069 0.89111 1.22682 0.85756 0.99012 1.01342 1.23573 1.01677 1.05727 0.95074 1.23063 1.02617 0.95052 1.00174 0.93189 0.92088 0.95464 0.91997 0.93800 0.93059 0.90089 0.75463 0.91358 0.91064 0.91486 0.90868 0.90407 0.91619 0.94587 0.90439 0.95093 0.91406 0.90651 0.86463 0.88279 0.88924 0.88492 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.01 37.16 0.33 -3.00 16 2 C 0.25 5.70 2.22 -69.08 -0.15 5.54 16 3 H 0.05 1.12 5.49 -51.93 -0.29 0.84 16 4 C -0.62 -15.86 8.30 -34.44 -0.29 -16.15 16 5 H 0.07 1.78 7.38 -52.48 -0.39 1.39 16 6 C 0.04 1.17 5.20 -17.82 -0.09 1.08 16 7 N -0.89 -25.80 13.70 55.43 0.76 -25.04 16 8 Si 1.02 24.26 26.44 -169.99 -4.49 19.77 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.08 6.12 56.52 0.35 -5.74 16 12 N -0.99 -19.73 3.12 -115.86 -0.36 -20.09 16 13 C 0.11 1.85 9.15 59.85 0.55 2.40 16 14 S 2.78 52.54 6.09 -107.50 -0.66 51.89 16 15 O -1.00 -19.73 16.68 -57.17 -0.95 -20.68 16 16 O -0.99 -21.34 16.70 -57.17 -0.95 -22.29 16 17 N -1.13 -17.24 6.05 -10.61 -0.06 -17.30 16 18 C 0.12 1.62 6.25 -4.04 -0.03 1.59 16 19 C -0.12 -1.29 5.36 -26.73 -0.14 -1.43 16 20 C -0.12 -1.11 5.14 -26.73 -0.14 -1.25 16 21 C 0.06 0.52 4.93 -3.83 -0.02 0.50 16 22 N -0.51 -4.75 4.97 -234.89 -1.17 -5.92 16 23 C 0.02 0.13 7.96 60.06 0.48 0.61 16 24 C 0.02 0.18 6.11 -67.71 -0.41 -0.24 16 25 C -0.22 -1.57 9.51 -26.69 -0.25 -1.83 16 26 C -0.17 -1.27 9.99 -26.69 -0.27 -1.53 16 27 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 28 H 0.06 1.36 5.44 -51.93 -0.28 1.08 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.27 7.73 8.73 -40.82 -0.36 7.38 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 33 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 34 H 0.41 5.62 8.65 -34.47 -0.30 5.32 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 41 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 43 H 0.03 0.24 7.23 -51.93 -0.38 -0.14 16 44 H 0.07 0.51 6.63 -51.93 -0.34 0.16 16 45 H 0.07 0.60 6.47 -51.93 -0.34 0.26 16 46 H 0.12 0.91 7.93 -51.93 -0.41 0.50 16 47 H 0.10 0.69 5.90 -51.93 -0.31 0.39 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.10 0.74 7.56 -51.93 -0.39 0.35 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -31.53 398.29 -11.06 -42.59 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.74 Total: 4.79 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.43 Total: -13.70 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -0.83 Total: -68.36 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.91 Total: -42.98 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.49 Total: 19.77 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.66 Total: 51.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.53 -11.06 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622215731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.569 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds