Wall clock time and date at job start Tue Mar 31 2020 17:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.53001 * 109.46682 * 165.00196 * 18 17 14 20 20 C 1.53008 * 109.46875 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47114 * 180.02562 * 20 19 18 22 22 N 1.46903 * 109.46796 * 179.97438 * 21 20 19 23 23 C 1.46898 * 111.00142 * 66.05086 * 22 21 20 24 24 C 1.46903 * 110.99497 * 189.99889 * 22 21 20 25 25 C 1.53000 * 117.49726 * 243.74430 * 24 22 21 26 26 C 1.53005 * 117.49431 * 175.08468 * 24 22 21 27 27 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 28 28 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 29 29 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 30 30 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 31 31 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 32 32 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 33 33 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 34 34 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 35 35 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 36 36 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 37 37 H 1.08997 * 109.47413 * 299.99887 * 19 18 17 38 38 H 1.08994 * 109.47046 * 60.00543 * 19 18 17 39 39 H 1.09003 * 109.46780 * 300.00386 * 20 19 18 40 40 H 1.08999 * 109.47246 * 59.99763 * 20 19 18 41 41 H 1.08997 * 109.47280 * 299.99572 * 21 20 19 42 42 H 1.09005 * 109.47399 * 60.00200 * 21 20 19 43 43 H 1.08993 * 109.47253 * 59.99321 * 23 22 21 44 44 H 1.09000 * 109.47230 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.46601 * 299.99462 * 23 22 21 46 46 H 1.08995 * 115.55189 * 29.42504 * 24 22 21 47 47 H 1.08995 * 117.50420 * 0.02562 * 25 24 22 48 48 H 1.09003 * 117.49643 * 145.02787 * 25 24 22 49 49 H 1.09000 * 117.50038 * 214.98067 * 26 24 22 50 50 H 1.09003 * 117.50360 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6576 -1.3311 -1.7338 20 6 7.2760 -2.7304 -1.7590 21 6 8.7979 -2.6175 -1.6504 22 7 9.3914 -3.9611 -1.6739 23 6 9.1810 -4.6068 -2.9765 24 6 10.8201 -3.9114 -1.3357 25 6 11.8167 -4.3417 -2.4139 26 6 11.5614 -5.2432 -1.2033 27 1 -0.3634 -1.0206 -0.1200 28 1 -0.3634 0.4065 0.9439 29 1 -0.3634 0.6142 -0.8239 30 1 1.9114 -1.9121 3.4376 31 1 0.7375 -2.1443 -1.9995 32 1 2.4627 -2.5818 -1.9866 33 1 1.5294 -2.5969 -0.4711 34 1 5.0733 0.6550 -1.5283 35 1 4.7539 -2.0248 -1.0020 36 1 4.8735 -1.9407 -2.7760 37 1 7.0394 -0.7505 -2.5735 38 1 6.9197 -0.8345 -0.7996 39 1 6.8942 -3.3115 -0.9194 40 1 7.0138 -3.2267 -2.6933 41 1 9.1799 -2.0364 -2.4896 42 1 9.0597 -2.1214 -0.7157 43 1 9.6446 -4.0061 -3.7589 44 1 9.6306 -5.5997 -2.9667 45 1 8.1119 -4.6936 -3.1705 46 1 11.1176 -3.1015 -0.6697 47 1 11.4124 -4.6614 -3.3743 48 1 12.7701 -3.8152 -2.4570 49 1 12.3470 -5.3094 -0.4506 50 1 10.9890 -6.1564 -1.3667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622215731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:05 Heat of formation + Delta-G solvation = -74.274555 kcal Electronic energy + Delta-G solvation = -27567.445931 eV Core-core repulsion = 23756.359935 eV Total energy + Delta-G solvation = -3811.085996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.91516 -38.41635 -38.05226 -37.49728 -36.94320 -35.49054 -34.59668 -32.75835 -31.56417 -28.75340 -27.28247 -26.99777 -26.61606 -23.69261 -23.26216 -22.49070 -21.98726 -20.95878 -20.27154 -19.48879 -18.73633 -18.42766 -17.62698 -17.39428 -16.76947 -16.48589 -16.10919 -15.64350 -15.48036 -15.25835 -15.04783 -14.93608 -14.59768 -14.16549 -13.94564 -13.73375 -13.60457 -13.53142 -13.42804 -13.26302 -13.22551 -13.15113 -12.99487 -12.79461 -12.49480 -12.43254 -12.30894 -12.29190 -12.21439 -12.09626 -11.86477 -11.65044 -11.58703 -11.46220 -11.21023 -11.17123 -10.51940 -10.35379 -9.81609 -9.10311 -8.65249 -6.27965 -0.33063 1.51490 1.54168 1.72111 1.94967 2.50063 2.57081 2.69720 3.05004 3.07703 3.38707 3.80187 3.92286 3.95137 3.98663 4.04320 4.10185 4.19038 4.20666 4.34030 4.45444 4.49781 4.59837 4.64482 4.67911 4.70832 4.74234 4.76239 4.78093 4.84274 4.88974 4.91361 4.93514 4.98587 5.08343 5.09040 5.13852 5.22463 5.30794 5.32719 5.40724 5.53589 5.74143 6.01559 6.06794 6.12398 6.13095 6.15062 6.70288 7.43014 8.68115 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.002742 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.827443 B =10207.837609 C =11314.414441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.246 3.754 3 H 0.040 0.960 4 C -0.602 4.602 5 H 0.044 0.956 6 C 0.000 4.000 7 N -0.927 5.927 8 Si 1.051 2.949 9 H -0.286 1.286 10 H -0.268 1.268 11 H -0.250 1.250 12 N -0.993 5.993 13 C 0.102 3.898 14 S 2.799 3.201 15 O -1.004 7.004 16 O -1.012 7.012 17 N -1.120 6.120 18 C 0.117 3.883 19 C -0.115 4.115 20 C -0.110 4.110 21 C 0.061 3.939 22 N -0.527 5.527 23 C 0.017 3.983 24 C 0.006 3.994 25 C -0.213 4.213 26 C -0.172 4.172 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.259 0.741 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.421 0.579 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.916 -5.259 -12.794 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.058 0.942 4 C -0.641 4.641 5 H 0.062 0.938 6 C -0.202 4.202 7 N -0.561 5.561 8 Si 0.873 3.127 9 H -0.212 1.212 10 H -0.193 1.193 11 H -0.174 1.174 12 N -0.834 5.834 13 C -0.044 4.044 14 S 2.807 3.193 15 O -0.987 6.987 16 O -0.997 6.997 17 N -0.882 5.882 18 C -0.009 4.009 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.066 4.066 22 N -0.248 5.248 23 C -0.131 4.131 24 C -0.103 4.103 25 C -0.251 4.251 26 C -0.210 4.210 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.963 -4.045 -12.163 19.702 hybrid contribution 0.968 -0.994 -0.775 1.589 sum 15.931 -5.039 -12.937 21.132 Atomic orbital electron populations 1.22335 0.97253 1.01315 1.00381 1.18762 0.92251 0.92240 0.82727 0.94221 1.22236 1.39741 1.10218 0.91904 0.93794 1.26614 0.93189 1.08217 0.92148 1.70961 1.46404 1.05904 1.32857 0.83981 0.79236 0.72833 0.76611 1.21216 1.19298 1.17424 1.57460 1.65516 1.22317 1.38076 1.21359 1.00719 0.80575 1.01731 1.01177 0.73037 0.72054 0.72999 1.93534 1.86511 1.76321 1.42343 1.93534 1.84616 1.34270 1.87253 1.55704 1.30970 1.16454 1.85102 1.21368 0.95651 0.82116 1.01761 1.21651 0.92185 0.98132 1.03490 1.21479 0.94301 0.96158 1.02933 1.22103 0.94328 0.88709 1.01492 1.61836 1.12109 1.20248 1.30655 1.22567 1.02475 0.99269 0.88799 1.22775 0.85525 0.99665 1.02316 1.23592 1.01604 1.05144 0.94802 1.23113 1.02644 0.94526 1.00733 0.92521 0.92884 0.93569 0.93232 0.92356 0.90799 0.91528 0.74383 0.92493 0.90324 0.90089 0.90952 0.91748 0.90966 0.93988 0.90623 0.94621 0.91056 0.90733 0.86228 0.88165 0.87999 0.87563 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 9.01 71.98 0.65 -5.76 16 2 C 0.25 11.08 2.22 44.24 0.10 11.18 16 3 H 0.04 1.87 5.49 -2.39 -0.01 1.86 16 4 C -0.60 -31.03 8.30 25.60 0.21 -30.81 16 5 H 0.04 2.42 7.38 -2.91 -0.02 2.40 16 6 C 0.00 0.00 5.20 84.66 0.44 0.44 16 7 N -0.93 -54.41 13.70 21.45 0.29 -54.12 16 8 Si 1.05 48.05 26.44 68.60 1.81 49.86 16 9 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.25 -10.42 6.12 99.48 0.61 -9.81 16 12 N -0.99 -38.46 3.12 -520.45 -1.62 -40.09 16 13 C 0.10 3.42 9.15 127.77 1.17 4.58 16 14 S 2.80 101.18 6.09 -56.49 -0.34 100.84 16 15 O -1.00 -37.70 16.68 -128.00 -2.14 -39.83 16 16 O -1.01 -42.35 16.70 -128.00 -2.14 -44.49 16 17 N -1.12 -32.53 6.05 -187.48 -1.14 -33.66 16 18 C 0.12 2.91 6.25 86.38 0.54 3.45 16 19 C -0.12 -2.21 5.36 30.60 0.16 -2.05 16 20 C -0.11 -1.97 5.14 30.59 0.16 -1.81 16 21 C 0.06 1.02 4.93 86.30 0.43 1.45 16 22 N -0.53 -9.24 4.97 -897.06 -4.46 -13.69 16 23 C 0.02 0.25 7.96 127.69 1.02 1.26 16 24 C 0.01 0.10 6.11 44.92 0.27 0.37 16 25 C -0.21 -2.68 9.51 30.62 0.29 -2.39 16 26 C -0.17 -2.35 9.99 30.62 0.31 -2.04 16 27 H 0.06 2.24 7.45 -2.39 -0.02 2.23 16 28 H 0.05 2.27 5.44 -2.39 -0.01 2.26 16 29 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.26 15.26 8.73 -92.70 -0.81 14.45 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.11 7.79 -2.39 -0.02 2.09 16 33 H 0.07 2.42 6.92 -2.39 -0.02 2.40 16 34 H 0.42 10.80 8.65 -96.75 -0.84 9.96 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.20 6.55 -2.39 -0.02 1.18 16 41 H 0.04 0.65 8.12 -2.39 -0.02 0.63 16 42 H 0.08 1.28 7.96 -2.38 -0.02 1.26 16 43 H 0.04 0.49 7.23 -2.39 -0.02 0.47 16 44 H 0.07 0.99 6.63 -2.39 -0.02 0.97 16 45 H 0.07 1.09 6.47 -2.39 -0.02 1.08 16 46 H 0.12 1.73 7.93 -2.39 -0.02 1.71 16 47 H 0.10 1.24 5.90 -2.39 -0.01 1.23 16 48 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.09 1.33 7.56 -2.39 -0.02 1.31 16 Total: -1.00 -65.87 398.29 -4.04 -69.91 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.05 Total: 27.40 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.74 Total: -22.13 kcal Atomic # 7 Polarization: -134.63 SS G_CDS: -6.93 Total: -141.56 kcal Atomic # 8 Polarization: -80.05 SS G_CDS: -4.27 Total: -84.32 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.81 Total: 49.86 kcal Atomic # 16 Polarization: 101.18 SS G_CDS: -0.34 Total: 100.84 kcal Total: -65.87 -4.04 -69.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622215731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.362 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds