Wall clock time and date at job start Tue Mar 31 2020 17:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99721 * 2 1 4 4 H 1.48497 * 109.47036 * 240.00206 * 3 2 1 5 5 H 1.48498 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47410 * 120.00004 * 3 2 1 7 7 C 1.38814 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99987 * 163.07114 * 7 2 1 9 9 N 1.36941 * 119.99701 * 343.07678 * 7 2 1 10 10 C 1.46927 * 120.62823 * 331.83159 * 9 7 2 11 11 C 1.53198 * 108.77501 * 233.63260 * 10 9 7 12 12 C 1.53041 * 109.30870 * 305.36782 * 11 10 9 13 13 C 1.53007 * 109.45617 * 181.38660 * 12 11 10 14 14 N 1.46500 * 109.46731 * 174.97323 * 13 12 11 15 15 C 1.34778 * 119.99456 * 179.97438 * 14 13 12 16 16 O 1.21536 * 120.00392 * 359.97438 * 15 14 13 17 17 C 1.47923 * 119.99845 * 180.02562 * 15 14 13 18 18 C 1.33753 * 125.55717 * 179.97438 * 17 15 14 19 19 C 1.50983 * 130.86224 * 0.85412 * 18 17 15 20 20 C 1.53855 * 106.39957 * 156.09795 * 19 18 17 21 21 C 1.52650 * 110.19997 * 53.14795 * 20 19 18 22 22 N 1.46650 * 111.71901 * 298.88782 * 21 20 19 23 23 C 1.30357 * 119.15814 * 33.92843 * 22 21 20 24 24 N 1.37116 * 131.39657 * 176.43534 * 23 22 21 25 25 N 1.38672 * 125.55444 * 359.97438 * 17 15 14 26 26 C 1.53040 * 109.52813 * 61.37360 * 12 11 10 27 27 C 1.46918 * 120.63081 * 151.85695 * 9 7 2 28 28 H 0.97001 * 120.00217 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58977 * 113.84714 * 10 9 7 30 30 H 1.08995 * 109.70696 * 353.48759 * 10 9 7 31 31 H 1.08995 * 109.49553 * 185.41563 * 11 10 9 32 32 H 1.09000 * 109.49719 * 65.31669 * 11 10 9 33 33 H 1.08995 * 109.46074 * 301.35453 * 12 11 10 34 34 H 1.08994 * 109.47018 * 54.97228 * 13 12 11 35 35 H 1.08998 * 109.46654 * 294.96855 * 13 12 11 36 36 H 0.96995 * 120.00387 * 359.97438 * 14 13 12 37 37 H 1.09003 * 110.06128 * 275.31596 * 19 18 17 38 38 H 1.08994 * 110.06683 * 36.87891 * 19 18 17 39 39 H 1.08995 * 109.34558 * 173.36951 * 20 19 18 40 40 H 1.09002 * 109.34363 * 292.92217 * 20 19 18 41 41 H 1.09009 * 109.02882 * 178.31897 * 21 20 19 42 42 H 1.08998 * 108.97595 * 59.43587 * 21 20 19 43 43 H 0.97000 * 126.22294 * 2.56112 * 24 23 22 44 44 H 0.96997 * 125.32599 * 0.22894 * 25 17 15 45 45 H 1.08993 * 109.49804 * 58.58004 * 26 12 11 46 46 H 1.09000 * 109.49624 * 178.67212 * 26 12 11 47 47 H 1.09001 * 109.59031 * 246.15386 * 27 9 7 48 48 H 1.08998 * 109.58796 * 6.43654 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3399 1.2682 11 6 0.4984 -3.3182 2.4153 12 6 0.8135 -4.7000 1.8378 13 6 1.0518 -5.6881 2.9815 14 7 1.2347 -7.0344 2.4336 15 6 1.4607 -8.0738 3.2613 16 8 1.5131 -7.8941 4.4621 17 6 1.6459 -9.4331 2.7080 18 6 1.8758 -10.5394 3.4237 19 6 1.9933 -10.7446 4.9149 20 6 1.6544 -12.2221 5.1780 21 6 2.5185 -13.1253 4.3018 22 7 2.2879 -12.8785 2.8747 23 6 2.0132 -11.6683 2.4757 24 7 1.8204 -11.1490 1.2214 25 7 1.6096 -9.7680 1.3629 26 6 2.0688 -4.6162 0.9665 27 6 1.8144 -3.6529 -0.1971 28 1 -0.4850 0.8400 0.0004 29 1 -0.6768 -2.6412 0.7374 30 1 0.0966 -1.3345 1.6685 31 1 -0.3821 -3.3831 3.0545 32 1 1.3480 -2.9659 3.0001 33 1 -0.0265 -5.0409 1.2327 34 1 0.1923 -5.6822 3.6517 35 1 1.9451 -5.3961 3.5336 36 1 1.1932 -7.1777 1.4752 37 1 3.0104 -10.5302 5.2428 38 1 1.2868 -10.1002 5.4379 39 1 1.8385 -12.4535 6.2271 40 1 0.6028 -12.3974 4.9509 41 1 2.2844 -14.1664 4.5248 42 1 3.5683 -12.9408 4.5294 43 1 1.8284 -11.6454 0.3880 44 1 1.4613 -9.1457 0.6337 45 1 2.9035 -4.2517 1.5652 46 1 2.3063 -5.6052 0.5746 47 1 1.0409 -4.0614 -0.8475 48 1 2.7336 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627910162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:59 Heat of formation + Delta-G solvation = 73.600949 kcal Electronic energy + Delta-G solvation = -28476.961533 eV Core-core repulsion = 24569.136700 eV Total energy + Delta-G solvation = -3907.824833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -41.42120 -39.60397 -37.92146 -37.02316 -35.20034 -33.39946 -32.94592 -31.00942 -30.61593 -30.26415 -29.77480 -27.19522 -25.61258 -24.50873 -23.29384 -22.77328 -22.22967 -21.16517 -20.23653 -19.19405 -19.13388 -18.70888 -17.28064 -16.76093 -16.21288 -16.07913 -15.54847 -15.34917 -14.94153 -14.73430 -14.29137 -14.13305 -13.92723 -13.68601 -13.58210 -13.44561 -13.31249 -13.22974 -12.50902 -12.45927 -12.33013 -12.01005 -11.70769 -11.44611 -11.31429 -11.05997 -10.80115 -10.77323 -10.62441 -10.54987 -10.33239 -10.30377 -9.99132 -9.67452 -9.58773 -9.55950 -9.25279 -9.06023 -8.52628 -7.40818 -6.74181 -5.85111 -3.27956 0.79340 1.40549 2.49519 2.76099 3.02891 3.34329 3.40552 3.41712 3.47288 4.14020 4.44413 4.49840 4.73720 4.88038 4.93175 4.96510 5.06569 5.09029 5.23781 5.33841 5.42200 5.49711 5.51522 5.62812 5.70814 5.71713 5.77332 5.83892 5.89732 5.93166 5.99567 6.06558 6.16507 6.20938 6.31225 6.34929 6.49979 6.57861 6.64863 6.70603 6.86047 6.87752 7.17346 7.29417 7.36215 7.58485 7.73489 7.79249 8.02312 8.39043 9.15234 9.78467 10.34643 11.23386 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032224 B = 0.002052 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.713357 B =13644.058922 C =14049.992912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.122 3.878 14 N -0.716 5.716 15 C 0.579 3.421 16 O -0.509 6.509 17 C 0.120 3.880 18 C -0.198 4.198 19 C -0.040 4.040 20 C -0.148 4.148 21 C 0.077 3.923 22 N -0.609 5.609 23 C 0.420 3.580 24 N -0.496 5.496 25 N -0.517 5.517 26 C -0.128 4.128 27 C 0.145 3.855 28 H 0.255 0.745 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.448 0.552 44 H 0.441 0.559 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.015 0.985 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -21.553 5.143 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.110 4.110 13 C -0.001 4.001 14 N -0.367 5.367 15 C 0.362 3.638 16 O -0.383 6.383 17 C 0.007 3.993 18 C -0.215 4.215 19 C -0.078 4.078 20 C -0.187 4.187 21 C -0.053 4.053 22 N -0.342 5.342 23 C 0.146 3.854 24 N -0.232 5.232 25 N -0.245 5.245 26 C -0.167 4.167 27 C 0.019 3.981 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.295 0.705 44 H 0.287 0.713 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.661 -22.060 5.544 22.806 hybrid contribution 0.193 1.494 -0.941 1.776 sum 1.854 -20.566 4.603 21.156 Atomic orbital electron populations 1.70010 1.05269 1.25705 1.53725 1.25048 0.95296 0.98462 1.00782 0.86370 0.78934 0.83300 0.78164 1.20891 1.21612 1.20976 1.19129 0.92514 0.84843 1.41934 0.91791 1.44032 1.35903 1.01482 1.50038 1.20765 0.88596 0.98225 0.87863 1.22185 1.00493 0.94434 1.00169 1.21335 0.98804 0.95507 0.95318 1.21725 1.02113 0.79249 0.96996 1.46051 1.72169 1.08467 1.09994 1.17339 0.77824 0.82182 0.86465 1.90839 1.50086 1.83519 1.13854 1.19791 1.02154 0.94358 0.82979 1.21620 1.10889 0.91750 0.97277 1.20238 1.02740 0.96267 0.88603 1.22057 1.00774 0.95247 1.00600 1.21756 0.98592 0.99261 0.85739 1.72198 1.30965 1.15201 1.15873 1.19871 0.91823 0.90465 0.83274 1.42905 1.77401 0.95863 1.07064 1.43800 1.78159 0.96698 1.05878 1.22091 0.97057 0.98593 0.98954 1.20879 0.97551 0.87094 0.92614 0.93528 0.96437 0.89341 0.92931 0.92258 0.91229 0.91148 0.90965 0.76838 0.90357 0.89230 0.90740 0.91723 0.90258 0.92328 0.70463 0.71252 0.91983 0.93735 0.96672 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.94 2.99 -172.32 -0.52 -14.46 16 10 C 0.17 3.81 5.30 -3.71 -0.02 3.79 16 11 C -0.13 -2.26 5.36 -26.61 -0.14 -2.40 16 12 C -0.09 -1.25 2.19 -90.57 -0.20 -1.45 16 13 C 0.12 1.46 5.06 -4.04 -0.02 1.44 16 14 N -0.72 -7.08 5.27 -61.23 -0.32 -7.40 16 15 C 0.58 6.64 7.83 -12.29 -0.10 6.55 16 16 O -0.51 -7.41 15.35 5.33 0.08 -7.33 16 17 C 0.12 1.22 7.01 -82.38 -0.58 0.64 16 18 C -0.20 -2.22 6.06 -102.03 -0.62 -2.84 16 19 C -0.04 -0.42 5.74 -27.30 -0.16 -0.58 16 20 C -0.15 -1.34 5.96 -26.47 -0.16 -1.50 16 21 C 0.08 0.77 6.93 -4.14 -0.03 0.74 16 22 N -0.61 -7.33 11.06 -58.71 -0.65 -7.98 16 23 C 0.42 4.67 8.35 -154.86 -1.29 3.37 16 24 N -0.50 -3.98 7.49 32.37 0.24 -3.74 16 25 N -0.52 -3.75 7.34 33.19 0.24 -3.50 16 26 C -0.13 -1.86 5.25 -26.61 -0.14 -2.00 16 27 C 0.15 2.75 6.52 -3.71 -0.02 2.72 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 2.94 6.75 -40.82 -0.28 2.66 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.99 7.24 -51.93 -0.38 0.61 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.45 2.37 8.96 -182.36 -1.63 0.73 16 44 H 0.44 1.83 8.15 -182.36 -1.49 0.34 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.51 7.15 -51.93 -0.37 0.13 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -32.42 377.94 -13.25 -45.67 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.91 Total: 0.11 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.70 Total: 1.60 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.38 Total: -61.87 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.08 Total: -7.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.42 -13.25 -45.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627910162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.275 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds