Wall clock time and date at job start Tue Mar 31 2020 17:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99721 * 2 1 4 4 H 1.48497 * 109.47036 * 240.00206 * 3 2 1 5 5 H 1.48498 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47410 * 120.00004 * 3 2 1 7 7 C 1.38814 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99987 * 163.07114 * 7 2 1 9 9 N 1.36941 * 119.99701 * 343.07678 * 7 2 1 10 10 C 1.46927 * 120.62823 * 331.83159 * 9 7 2 11 11 C 1.53198 * 108.77501 * 233.63260 * 10 9 7 12 12 C 1.53041 * 109.30870 * 305.36782 * 11 10 9 13 13 C 1.53007 * 109.45617 * 181.38660 * 12 11 10 14 14 N 1.46500 * 109.46731 * 174.97323 * 13 12 11 15 15 C 1.34778 * 119.99456 * 179.97438 * 14 13 12 16 16 O 1.21536 * 120.00392 * 359.97438 * 15 14 13 17 17 C 1.47923 * 119.99845 * 180.02562 * 15 14 13 18 18 C 1.33753 * 125.55717 * 179.97438 * 17 15 14 19 19 C 1.50983 * 130.86224 * 0.85412 * 18 17 15 20 20 C 1.53855 * 106.39957 * 156.09795 * 19 18 17 21 21 C 1.52650 * 110.19997 * 53.14795 * 20 19 18 22 22 N 1.46650 * 111.71901 * 298.88782 * 21 20 19 23 23 C 1.30357 * 119.15814 * 33.92843 * 22 21 20 24 24 N 1.37116 * 131.39657 * 176.43534 * 23 22 21 25 25 N 1.38672 * 125.55444 * 359.97438 * 17 15 14 26 26 C 1.53040 * 109.52813 * 61.37360 * 12 11 10 27 27 C 1.46918 * 120.63081 * 151.85695 * 9 7 2 28 28 H 0.97001 * 120.00217 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58977 * 113.84714 * 10 9 7 30 30 H 1.08995 * 109.70696 * 353.48759 * 10 9 7 31 31 H 1.08995 * 109.49553 * 185.41563 * 11 10 9 32 32 H 1.09000 * 109.49719 * 65.31669 * 11 10 9 33 33 H 1.08995 * 109.46074 * 301.35453 * 12 11 10 34 34 H 1.08994 * 109.47018 * 54.97228 * 13 12 11 35 35 H 1.08998 * 109.46654 * 294.96855 * 13 12 11 36 36 H 0.96995 * 120.00387 * 359.97438 * 14 13 12 37 37 H 1.09003 * 110.06128 * 275.31596 * 19 18 17 38 38 H 1.08994 * 110.06683 * 36.87891 * 19 18 17 39 39 H 1.08995 * 109.34558 * 173.36951 * 20 19 18 40 40 H 1.09002 * 109.34363 * 292.92217 * 20 19 18 41 41 H 1.09009 * 109.02882 * 178.31897 * 21 20 19 42 42 H 1.08998 * 108.97595 * 59.43587 * 21 20 19 43 43 H 0.97000 * 126.22294 * 2.56112 * 24 23 22 44 44 H 0.96997 * 125.32599 * 0.22894 * 25 17 15 45 45 H 1.08993 * 109.49804 * 58.58004 * 26 12 11 46 46 H 1.09000 * 109.49624 * 178.67212 * 26 12 11 47 47 H 1.09001 * 109.59031 * 246.15386 * 27 9 7 48 48 H 1.08998 * 109.58796 * 6.43654 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3399 1.2682 11 6 0.4984 -3.3182 2.4153 12 6 0.8135 -4.7000 1.8378 13 6 1.0518 -5.6881 2.9815 14 7 1.2347 -7.0344 2.4336 15 6 1.4607 -8.0738 3.2613 16 8 1.5131 -7.8941 4.4621 17 6 1.6459 -9.4331 2.7080 18 6 1.8758 -10.5394 3.4237 19 6 1.9933 -10.7446 4.9149 20 6 1.6544 -12.2221 5.1780 21 6 2.5185 -13.1253 4.3018 22 7 2.2879 -12.8785 2.8747 23 6 2.0132 -11.6683 2.4757 24 7 1.8204 -11.1490 1.2214 25 7 1.6096 -9.7680 1.3629 26 6 2.0688 -4.6162 0.9665 27 6 1.8144 -3.6529 -0.1971 28 1 -0.4850 0.8400 0.0004 29 1 -0.6768 -2.6412 0.7374 30 1 0.0966 -1.3345 1.6685 31 1 -0.3821 -3.3831 3.0545 32 1 1.3480 -2.9659 3.0001 33 1 -0.0265 -5.0409 1.2327 34 1 0.1923 -5.6822 3.6517 35 1 1.9451 -5.3961 3.5336 36 1 1.1932 -7.1777 1.4752 37 1 3.0104 -10.5302 5.2428 38 1 1.2868 -10.1002 5.4379 39 1 1.8385 -12.4535 6.2271 40 1 0.6028 -12.3974 4.9509 41 1 2.2844 -14.1664 4.5248 42 1 3.5683 -12.9408 4.5294 43 1 1.8284 -11.6454 0.3880 44 1 1.4613 -9.1457 0.6337 45 1 2.9035 -4.2517 1.5652 46 1 2.3063 -5.6052 0.5746 47 1 1.0409 -4.0614 -0.8475 48 1 2.7336 -3.5130 -0.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627910162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:58 Heat of formation + Delta-G solvation = 50.776340 kcal Electronic energy + Delta-G solvation = -28477.951283 eV Core-core repulsion = 24569.136700 eV Total energy + Delta-G solvation = -3908.814583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19787 -40.55243 -39.29308 -37.75908 -36.49347 -34.59990 -34.04957 -32.57917 -31.46790 -31.34408 -30.96835 -28.56910 -26.49074 -25.93802 -24.40660 -23.74617 -23.48246 -22.51090 -21.24074 -20.53647 -19.89287 -19.43573 -18.69288 -18.00279 -17.17539 -16.90108 -16.76097 -16.39762 -16.15966 -15.75595 -15.51460 -15.28911 -15.23786 -14.91760 -14.77919 -14.63105 -14.22089 -14.08617 -13.99974 -13.84057 -13.42148 -13.09622 -12.99169 -12.81292 -12.54928 -12.44916 -12.27636 -12.06271 -12.01173 -11.82396 -11.62980 -11.54032 -11.48366 -11.14187 -11.08836 -10.51985 -10.40239 -10.13495 -9.84705 -8.65234 -8.13307 -7.86751 -5.31240 -0.02771 0.76699 1.46573 1.48969 1.55239 1.66886 1.87098 2.18507 2.51700 2.75971 3.27792 3.36675 3.72743 3.75407 3.84637 3.95301 4.01277 4.09175 4.15081 4.26701 4.33337 4.52693 4.56418 4.67201 4.71012 4.75732 4.80025 4.82587 4.88931 4.95647 5.01817 5.02718 5.10857 5.15030 5.19860 5.25695 5.31075 5.33036 5.34162 5.45548 5.57316 5.64894 5.67744 5.81858 6.11090 6.38121 6.41095 6.77304 6.94178 7.17213 7.32127 7.90240 8.39605 9.18888 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032224 B = 0.002052 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.713357 B =13644.058922 C =14049.992912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.176 3.824 11 C -0.123 4.123 12 C -0.079 4.079 13 C 0.135 3.865 14 N -0.701 5.701 15 C 0.584 3.416 16 O -0.541 6.541 17 C 0.126 3.874 18 C -0.223 4.223 19 C -0.040 4.040 20 C -0.140 4.140 21 C 0.073 3.927 22 N -0.639 5.639 23 C 0.412 3.588 24 N -0.484 5.484 25 N -0.496 5.496 26 C -0.115 4.115 27 C 0.138 3.862 28 H 0.249 0.751 29 H -0.001 1.001 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.461 0.539 44 H 0.458 0.542 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.020 0.980 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -23.087 4.795 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.050 3.950 11 C -0.162 4.162 12 C -0.097 4.097 13 C 0.011 3.989 14 N -0.353 5.353 15 C 0.367 3.633 16 O -0.417 6.417 17 C 0.011 3.989 18 C -0.241 4.241 19 C -0.078 4.078 20 C -0.179 4.179 21 C -0.057 4.057 22 N -0.373 5.373 23 C 0.137 3.863 24 N -0.221 5.221 25 N -0.226 5.226 26 C -0.154 4.154 27 C 0.013 3.987 28 H 0.058 0.942 29 H 0.017 0.983 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.311 0.689 44 H 0.308 0.692 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.037 0.963 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.322 -23.616 5.112 24.274 hybrid contribution -0.013 1.967 -0.907 2.166 sum 2.310 -21.649 4.205 22.174 Atomic orbital electron populations 1.70157 1.06530 1.25815 1.55485 1.25753 0.96028 1.01372 1.01512 0.85417 0.77631 0.79589 0.78271 1.20178 1.22151 1.20601 1.19449 0.92734 0.86255 1.40719 0.91849 1.44325 1.35978 1.02434 1.50885 1.20574 0.87801 0.97566 0.89036 1.21976 1.01020 0.95041 0.98199 1.21162 0.98850 0.93975 0.95759 1.21420 1.01966 0.79520 0.95949 1.45820 1.71442 1.07347 1.10701 1.17390 0.77212 0.82616 0.86037 1.90835 1.51505 1.84023 1.15361 1.19554 1.01860 0.93460 0.84022 1.21803 1.12216 0.92293 0.97813 1.20201 1.02297 0.96819 0.88498 1.21988 0.99997 0.94322 1.01549 1.21811 0.98723 0.99829 0.85297 1.72157 1.32391 1.15845 1.16935 1.20028 0.91779 0.90315 0.84200 1.42975 1.76254 0.96027 1.06877 1.43762 1.76737 0.96680 1.05462 1.21950 0.96912 0.99426 0.97147 1.21088 0.97244 0.85980 0.94359 0.94179 0.98301 0.93271 0.91101 0.93092 0.90094 0.90940 0.91649 0.75039 0.90563 0.90259 0.88887 0.92551 0.89573 0.92370 0.68862 0.69224 0.93060 0.89420 0.96251 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 11.19 21.65 0.24 -53.81 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 3 Si 0.96 44.10 29.59 68.60 2.03 46.13 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.26 -13.92 9.58 84.03 0.81 -13.11 16 8 H 0.06 3.31 7.89 -2.91 -0.02 3.28 16 9 N -0.61 -28.89 2.99 -699.11 -2.09 -30.98 16 10 C 0.18 7.92 5.30 86.36 0.46 8.38 16 11 C -0.12 -4.03 5.36 30.67 0.16 -3.87 16 12 C -0.08 -1.94 2.19 -10.76 -0.02 -1.97 16 13 C 0.13 2.82 5.06 86.38 0.44 3.25 16 14 N -0.70 -11.37 5.27 -465.90 -2.45 -13.82 16 15 C 0.58 11.92 7.83 86.81 0.68 12.60 16 16 O -0.54 -14.91 15.35 -3.83 -0.06 -14.97 16 17 C 0.13 2.25 7.01 39.61 0.28 2.53 16 18 C -0.22 -4.69 6.06 -18.19 -0.11 -4.80 16 19 C -0.04 -0.81 5.74 30.23 0.17 -0.63 16 20 C -0.14 -2.42 5.96 30.77 0.18 -2.24 16 21 C 0.07 1.41 6.93 86.23 0.60 2.01 16 22 N -0.64 -14.71 11.06 -339.65 -3.76 -18.47 16 23 C 0.41 8.49 8.35 136.69 1.14 9.63 16 24 N -0.48 -6.52 7.49 -51.51 -0.39 -6.91 16 25 N -0.50 -5.58 7.34 -48.90 -0.36 -5.94 16 26 C -0.12 -3.01 5.25 30.67 0.16 -2.85 16 27 C 0.14 5.02 6.52 86.36 0.56 5.58 16 28 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.05 2.59 6.06 -2.39 -0.01 2.57 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 4.18 6.75 -92.71 -0.63 3.55 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.73 7.24 -2.39 -0.02 1.72 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.46 3.63 8.96 -213.12 -1.91 1.72 16 44 H 0.46 1.86 8.15 -213.12 -1.74 0.12 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 1.56 7.15 -2.39 -0.02 1.54 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 48 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 Total: -1.00 -72.11 377.94 -4.18 -76.29 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.27 Total: 10.35 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.93 Total: 12.13 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -8.81 Total: -129.92 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.06 Total: -14.97 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.11 -4.18 -76.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627910162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.063 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds