Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47093 * 35.88652 * 3 2 1 5 5 N 1.46496 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00129 * 269.99599 * 5 4 3 7 7 C 1.53009 * 109.47238 * 270.00499 * 6 5 4 8 8 C 1.47196 * 109.47203 * 180.02562 * 7 6 5 9 9 N 7.55023 * 139.46674 * 89.86757 * 2 1 3 10 10 C 1.34777 * 120.00345 * 90.00092 * 5 4 3 11 11 O 1.21283 * 120.00463 * 179.97438 * 10 5 4 12 12 C 1.50700 * 119.99675 * 359.72090 * 10 5 4 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 5 14 14 C 1.46959 * 110.99366 * 293.79652 * 13 12 10 15 15 C 1.53055 * 109.36033 * 176.81289 * 14 13 12 16 16 N 1.46951 * 109.36597 * 58.40016 * 15 14 13 17 17 C 1.46904 * 111.00106 * 176.81006 * 16 15 14 18 18 C 1.50703 * 109.47064 * 293.80441 * 17 16 15 19 19 H 1.07997 * 120.00351 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99533 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99407 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00183 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47276 * 90.00255 * 22 20 18 24 24 H 1.48501 * 109.46658 * 209.99934 * 22 20 18 25 25 H 1.48502 * 109.47112 * 329.99445 * 22 20 18 26 26 C 1.46951 * 110.88318 * 300.67876 * 16 15 14 27 27 C 1.46949 * 111.00195 * 170.00155 * 13 12 10 28 28 H 1.08998 * 109.47246 * 275.88745 * 3 2 1 29 29 H 1.08997 * 109.47083 * 155.88040 * 3 2 1 30 30 H 1.08995 * 109.47592 * 59.99506 * 4 3 2 31 31 H 1.09002 * 109.47093 * 299.99814 * 4 3 2 32 32 H 1.09000 * 109.46889 * 29.99981 * 6 5 4 33 33 H 1.09001 * 109.47460 * 150.00590 * 6 5 4 34 34 H 1.09000 * 109.46757 * 299.99562 * 7 6 5 35 35 H 1.08993 * 109.47081 * 59.99692 * 7 6 5 36 36 H 1.09009 * 109.47352 * 300.27556 * 12 10 5 37 37 H 1.08998 * 109.47585 * 60.27844 * 12 10 5 38 38 H 1.08992 * 109.49244 * 296.77467 * 14 13 12 39 39 H 1.09003 * 109.49250 * 56.84912 * 14 13 12 40 40 H 1.09003 * 109.48877 * 298.43651 * 15 14 13 41 41 H 1.08995 * 109.48745 * 178.37289 * 15 14 13 42 42 H 1.09003 * 109.46776 * 53.80031 * 17 16 15 43 43 H 1.08997 * 109.47404 * 173.79853 * 17 16 15 44 44 H 0.97000 * 119.99528 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.49376 * 299.35664 * 26 16 15 46 46 H 1.08995 * 109.51085 * 179.29736 * 26 16 15 47 47 H 1.09004 * 109.48945 * 303.14997 * 27 13 12 48 48 H 1.08997 * 109.49550 * 63.21794 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1678 -0.8456 5 7 4.5835 -1.1668 -0.8461 6 6 5.3151 -0.4228 -1.8743 7 6 5.5703 -1.3327 -3.0778 8 6 6.3060 -0.5853 -4.1107 9 7 6.8744 -0.0113 -4.9068 10 6 5.2582 -1.8503 0.0994 11 8 6.4711 -1.8499 0.0988 12 6 4.5056 -2.6106 1.1609 13 7 5.4610 -3.2599 2.0685 14 6 6.2245 -4.3036 1.3703 15 6 7.2608 -4.8994 2.3262 16 7 6.5769 -5.4503 3.5045 17 6 7.5323 -6.0996 4.4121 18 6 8.1169 -7.3152 3.7400 19 1 7.8093 -7.5792 2.7390 20 6 9.0447 -8.0902 4.4031 21 7 9.5545 -9.1513 3.8167 22 14 9.5774 -7.6331 6.1342 23 1 8.6862 -8.2983 7.1183 24 1 10.9772 -8.0771 6.3547 25 1 9.4924 -6.1604 6.3056 26 6 5.8134 -4.4066 4.2026 27 6 4.7771 -3.8108 3.2467 28 1 2.9714 -0.1046 1.0222 29 1 2.9709 0.9387 -0.4199 30 1 2.7551 -1.0627 -1.8678 31 1 2.7556 -2.1060 -0.4257 32 1 4.7253 0.4383 -2.1886 33 1 6.2675 -0.0822 -1.4680 34 1 6.1601 -2.1938 -2.7635 35 1 4.6180 -1.6733 -3.4841 36 1 3.8786 -1.9210 1.7262 37 1 3.8793 -3.3683 0.6900 38 1 5.5459 -5.0879 1.0351 39 1 6.7319 -3.8687 0.5092 40 1 7.9559 -4.1207 2.6403 41 1 7.8087 -5.6937 1.8194 42 1 8.3318 -5.4008 4.6584 43 1 7.0189 -6.4009 5.3252 44 1 10.2069 -9.6967 4.2834 45 1 6.4920 -3.6223 4.5379 46 1 5.3061 -4.8412 5.0639 47 1 4.2292 -3.0165 3.7536 48 1 4.0820 -4.5895 2.9328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647360110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = 46.617024 kcal Electronic energy + Delta-G solvation = -28315.173105 eV Core-core repulsion = 24406.178160 eV Total energy + Delta-G solvation = -3908.994944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70282 -38.67540 -37.54671 -37.26101 -36.20069 -35.09616 -33.21548 -32.40154 -31.00201 -30.48903 -29.45208 -27.20353 -25.33988 -24.78885 -23.32504 -23.13321 -21.06305 -19.53873 -19.26841 -18.62312 -17.92358 -17.54738 -16.77377 -16.71558 -15.80995 -15.67678 -15.40594 -15.35747 -14.81450 -14.56865 -14.39753 -14.30344 -14.19641 -13.87709 -13.60083 -13.44878 -13.26167 -13.19813 -13.04688 -12.97296 -12.68572 -12.61414 -12.35462 -12.26770 -12.13089 -11.85529 -11.70470 -11.49937 -11.43627 -10.94452 -10.84984 -10.64169 -10.47342 -10.18570 -9.86408 -9.75637 -9.37081 -9.25070 -8.55419 -8.25897 -7.34963 -6.04020 -4.01157 1.98629 2.15623 2.25362 2.39625 2.41746 2.51021 3.29727 3.37405 3.39904 3.40047 3.61596 3.90617 4.09905 4.20301 4.21421 4.43550 4.48307 4.50750 4.60288 4.78638 4.82428 4.85943 4.95358 4.98734 5.18522 5.19580 5.26047 5.28313 5.36831 5.47488 5.62659 5.73126 5.86124 5.87362 6.05881 6.12327 6.30340 6.51805 6.69293 6.70947 6.85623 6.98709 7.01007 7.08387 7.16219 7.18706 7.61273 7.84175 7.92340 8.07044 8.67216 9.04016 9.57990 11.09085 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.002514 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.737947 B =11135.198089 C =12853.360889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.205 3.795 3 C -0.049 4.049 4 C 0.112 3.888 5 N -0.619 5.619 6 C 0.120 3.880 7 C -0.045 4.045 8 C 0.210 3.790 9 N -0.432 5.432 10 C 0.517 3.483 11 O -0.497 6.497 12 C 0.035 3.965 13 N -0.524 5.524 14 C 0.055 3.945 15 C 0.069 3.931 16 N -0.531 5.531 17 C 0.162 3.838 18 C -0.508 4.508 19 H 0.080 0.920 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.054 3.946 27 C 0.063 3.937 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.091 0.909 42 H -0.011 1.011 43 H 0.023 0.977 44 H 0.263 0.737 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 19.520 -9.659 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.114 4.114 3 C -0.090 4.090 4 C -0.014 4.014 5 N -0.354 5.354 6 C -0.004 4.004 7 C -0.087 4.087 8 C -0.109 4.109 9 N -0.109 5.109 10 C 0.305 3.695 11 O -0.369 6.369 12 C -0.097 4.097 13 N -0.249 5.249 14 C -0.073 4.073 15 C -0.059 4.059 16 N -0.255 5.255 17 C 0.036 3.964 18 C -0.547 4.547 19 H 0.098 0.902 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.192 1.192 26 C -0.075 4.075 27 C -0.065 4.065 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.007 0.993 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.523 20.199 -10.790 27.666 hybrid contribution 0.450 -0.104 1.299 1.379 sum -15.074 20.096 -9.491 26.854 Atomic orbital electron populations 1.81314 1.12959 1.07903 1.08186 1.28904 0.94941 0.93824 0.93697 1.19782 0.81925 1.02640 1.04668 1.21530 0.79870 0.98309 1.01643 1.47931 1.05868 1.52223 1.29414 1.21322 0.99447 0.93156 0.86492 1.19690 1.00229 0.98309 0.90428 1.28844 0.93805 0.94019 0.94209 1.81199 1.09528 1.09400 1.10793 1.20813 0.88335 0.78889 0.81466 1.90758 1.13595 1.59608 1.72898 1.22041 0.94730 0.98757 0.94141 1.61929 1.24167 1.31717 1.07100 1.22420 0.96194 0.91224 0.97441 1.21987 0.94319 0.97768 0.91839 1.62136 1.28220 1.26763 1.08425 1.20149 0.89517 0.94456 0.92256 1.21026 1.22462 1.07742 1.03421 0.90189 1.24903 0.95930 0.94805 0.97731 1.69896 1.30094 1.16201 1.37810 0.86863 0.78104 0.79285 0.85527 1.20208 1.21242 1.19217 1.22095 0.95912 0.93680 0.95853 1.22175 0.95853 0.97381 0.91117 0.86775 0.86681 0.88700 0.88740 0.89309 0.88370 0.86634 0.87156 0.88047 0.91684 0.94626 0.89287 0.95060 0.89071 0.99282 0.95882 0.92694 0.94964 0.90900 0.91004 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -3.53 18.54 42.15 0.78 -2.75 16 2 C 0.21 0.87 15.43 -20.76 -0.32 0.55 16 3 C -0.05 -0.02 6.02 -29.52 -0.18 -0.20 16 4 C 0.11 0.06 5.16 -4.04 -0.02 0.04 16 5 N -0.62 -1.99 2.47 -173.68 -0.43 -2.42 16 6 C 0.12 0.34 5.36 -4.04 -0.02 0.32 16 7 C -0.05 -0.14 6.03 -29.52 -0.18 -0.32 16 8 C 0.21 1.43 15.43 -20.82 -0.32 1.11 16 9 N -0.43 -4.55 18.53 42.08 0.78 -3.77 16 10 C 0.52 3.90 7.37 -10.98 -0.08 3.82 16 11 O -0.50 -6.06 13.92 5.55 0.08 -5.99 16 12 C 0.03 0.26 4.00 -4.97 -0.02 0.24 16 13 N -0.52 -6.51 4.45 -235.90 -1.05 -7.56 16 14 C 0.05 0.82 5.26 -3.76 -0.02 0.80 16 15 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 16 N -0.53 -10.84 4.70 -235.91 -1.11 -11.95 16 17 C 0.16 3.91 3.79 -4.97 -0.02 3.89 16 18 C -0.51 -14.29 9.03 -34.44 -0.31 -14.60 16 19 H 0.08 2.44 7.38 -52.49 -0.39 2.05 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 22 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 26 C 0.05 0.87 5.61 -3.77 -0.02 0.85 16 27 C 0.06 0.77 5.61 -3.77 -0.02 0.75 16 28 H 0.11 0.00 7.20 -51.93 -0.37 -0.38 16 29 H 0.12 -0.13 8.14 -51.93 -0.42 -0.55 16 30 H 0.09 -0.11 8.07 -51.93 -0.42 -0.53 16 31 H 0.09 0.04 6.45 -51.93 -0.34 -0.30 16 32 H 0.09 0.03 8.07 -51.93 -0.42 -0.39 16 33 H 0.10 0.50 7.42 -51.93 -0.39 0.12 16 34 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.10 0.48 7.04 -51.92 -0.37 0.11 16 37 H 0.07 0.40 7.39 -51.93 -0.38 0.01 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.32 5.85 -51.93 -0.30 1.02 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.96 6.79 -51.93 -0.35 1.60 16 42 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 43 H 0.02 0.55 7.46 -51.93 -0.39 0.17 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 47 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -38.09 397.50 -7.95 -46.04 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -7.45 Total: -8.09 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.65 Total: 0.41 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.25 Total: -55.13 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: 0.08 Total: -5.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.09 -7.95 -46.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647360110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.658 kcal (2) G-P(sol) polarization free energy of solvation -38.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds