Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47093 * 35.88652 * 3 2 1 5 5 N 1.46496 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00129 * 269.99599 * 5 4 3 7 7 C 1.53009 * 109.47238 * 270.00499 * 6 5 4 8 8 C 1.47196 * 109.47203 * 180.02562 * 7 6 5 9 9 N 7.55023 * 139.46674 * 89.86757 * 2 1 3 10 10 C 1.34777 * 120.00345 * 90.00092 * 5 4 3 11 11 O 1.21283 * 120.00463 * 179.97438 * 10 5 4 12 12 C 1.50700 * 119.99675 * 359.72090 * 10 5 4 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 5 14 14 C 1.46959 * 110.99366 * 293.79652 * 13 12 10 15 15 C 1.53055 * 109.36033 * 176.81289 * 14 13 12 16 16 N 1.46951 * 109.36597 * 58.40016 * 15 14 13 17 17 C 1.46904 * 111.00106 * 176.81006 * 16 15 14 18 18 C 1.50703 * 109.47064 * 293.80441 * 17 16 15 19 19 H 1.07997 * 120.00351 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99533 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99407 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00183 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47276 * 90.00255 * 22 20 18 24 24 H 1.48501 * 109.46658 * 209.99934 * 22 20 18 25 25 H 1.48502 * 109.47112 * 329.99445 * 22 20 18 26 26 C 1.46951 * 110.88318 * 300.67876 * 16 15 14 27 27 C 1.46949 * 111.00195 * 170.00155 * 13 12 10 28 28 H 1.08998 * 109.47246 * 275.88745 * 3 2 1 29 29 H 1.08997 * 109.47083 * 155.88040 * 3 2 1 30 30 H 1.08995 * 109.47592 * 59.99506 * 4 3 2 31 31 H 1.09002 * 109.47093 * 299.99814 * 4 3 2 32 32 H 1.09000 * 109.46889 * 29.99981 * 6 5 4 33 33 H 1.09001 * 109.47460 * 150.00590 * 6 5 4 34 34 H 1.09000 * 109.46757 * 299.99562 * 7 6 5 35 35 H 1.08993 * 109.47081 * 59.99692 * 7 6 5 36 36 H 1.09009 * 109.47352 * 300.27556 * 12 10 5 37 37 H 1.08998 * 109.47585 * 60.27844 * 12 10 5 38 38 H 1.08992 * 109.49244 * 296.77467 * 14 13 12 39 39 H 1.09003 * 109.49250 * 56.84912 * 14 13 12 40 40 H 1.09003 * 109.48877 * 298.43651 * 15 14 13 41 41 H 1.08995 * 109.48745 * 178.37289 * 15 14 13 42 42 H 1.09003 * 109.46776 * 53.80031 * 17 16 15 43 43 H 1.08997 * 109.47404 * 173.79853 * 17 16 15 44 44 H 0.97000 * 119.99528 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.49376 * 299.35664 * 26 16 15 46 46 H 1.08995 * 109.51085 * 179.29736 * 26 16 15 47 47 H 1.09004 * 109.48945 * 303.14997 * 27 13 12 48 48 H 1.08997 * 109.49550 * 63.21794 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1678 -0.8456 5 7 4.5835 -1.1668 -0.8461 6 6 5.3151 -0.4228 -1.8743 7 6 5.5703 -1.3327 -3.0778 8 6 6.3060 -0.5853 -4.1107 9 7 6.8744 -0.0113 -4.9068 10 6 5.2582 -1.8503 0.0994 11 8 6.4711 -1.8499 0.0988 12 6 4.5056 -2.6106 1.1609 13 7 5.4610 -3.2599 2.0685 14 6 6.2245 -4.3036 1.3703 15 6 7.2608 -4.8994 2.3262 16 7 6.5769 -5.4503 3.5045 17 6 7.5323 -6.0996 4.4121 18 6 8.1169 -7.3152 3.7400 19 1 7.8093 -7.5792 2.7390 20 6 9.0447 -8.0902 4.4031 21 7 9.5545 -9.1513 3.8167 22 14 9.5774 -7.6331 6.1342 23 1 8.6862 -8.2983 7.1183 24 1 10.9772 -8.0771 6.3547 25 1 9.4924 -6.1604 6.3056 26 6 5.8134 -4.4066 4.2026 27 6 4.7771 -3.8108 3.2467 28 1 2.9714 -0.1046 1.0222 29 1 2.9709 0.9387 -0.4199 30 1 2.7551 -1.0627 -1.8678 31 1 2.7556 -2.1060 -0.4257 32 1 4.7253 0.4383 -2.1886 33 1 6.2675 -0.0822 -1.4680 34 1 6.1601 -2.1938 -2.7635 35 1 4.6180 -1.6733 -3.4841 36 1 3.8786 -1.9210 1.7262 37 1 3.8793 -3.3683 0.6900 38 1 5.5459 -5.0879 1.0351 39 1 6.7319 -3.8687 0.5092 40 1 7.9559 -4.1207 2.6403 41 1 7.8087 -5.6937 1.8194 42 1 8.3318 -5.4008 4.6584 43 1 7.0189 -6.4009 5.3252 44 1 10.2069 -9.6967 4.2834 45 1 6.4920 -3.6223 4.5379 46 1 5.3061 -4.8412 5.0639 47 1 4.2292 -3.0165 3.7536 48 1 4.0820 -4.5895 2.9328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647360110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = 17.144643 kcal Electronic energy + Delta-G solvation = -28316.451123 eV Core-core repulsion = 24406.178160 eV Total energy + Delta-G solvation = -3910.272962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24617 -39.77692 -38.04899 -37.79069 -36.75542 -36.33604 -34.52085 -33.47775 -31.74279 -31.43357 -30.71590 -28.52128 -26.00720 -25.37909 -24.48616 -24.01258 -22.80245 -20.60679 -19.89484 -18.94458 -18.90934 -18.28435 -17.95333 -17.32652 -16.77006 -16.38269 -16.21914 -15.85200 -15.79553 -15.65143 -15.49850 -15.31152 -15.06147 -14.81015 -14.59326 -14.54402 -14.31554 -13.93939 -13.65977 -13.55931 -13.51179 -13.49965 -13.15671 -13.01646 -12.96762 -12.72004 -12.68602 -12.56397 -12.26847 -12.09672 -12.04968 -11.82776 -11.78593 -11.71429 -11.53474 -11.27023 -10.76545 -10.57214 -9.72176 -9.19488 -8.97983 -8.27010 -6.30000 1.35359 1.37534 1.48178 1.62294 1.69202 1.88587 1.98083 1.98908 2.09218 2.35781 2.99364 3.06042 3.17880 3.28702 3.29869 3.76808 4.06049 4.09061 4.14433 4.23193 4.27210 4.29041 4.33819 4.42544 4.51028 4.58452 4.64367 4.66479 4.74866 4.78100 4.87552 4.88065 4.94385 4.98309 5.03242 5.09302 5.12400 5.18812 5.22491 5.25054 5.55132 5.63122 5.94945 6.08916 6.12948 6.39666 6.48158 6.65740 6.69732 6.76038 6.77156 7.33607 7.36338 8.89556 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.002514 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.737947 B =11135.198089 C =12853.360889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.242 3.758 3 C -0.044 4.044 4 C 0.106 3.894 5 N -0.600 5.600 6 C 0.120 3.880 7 C -0.040 4.040 8 C 0.240 3.760 9 N -0.503 5.503 10 C 0.518 3.482 11 O -0.553 6.553 12 C 0.031 3.969 13 N -0.539 5.539 14 C 0.074 3.926 15 C 0.073 3.927 16 N -0.542 5.542 17 C 0.172 3.828 18 C -0.515 4.515 19 H 0.038 0.962 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.947 3.053 23 H -0.261 1.261 24 H -0.283 1.283 25 H -0.255 1.255 26 C 0.047 3.953 27 C 0.070 3.930 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.088 0.912 40 H 0.014 0.986 41 H 0.051 0.949 42 H -0.019 1.019 43 H 0.031 0.969 44 H 0.266 0.734 45 H 0.025 0.975 46 H 0.083 0.917 47 H 0.113 0.887 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 21.642 -8.612 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.075 4.075 3 C -0.085 4.085 4 C -0.018 4.018 5 N -0.333 5.333 6 C -0.004 4.004 7 C -0.081 4.081 8 C -0.077 4.077 9 N -0.181 5.181 10 C 0.306 3.694 11 O -0.430 6.430 12 C -0.099 4.099 13 N -0.264 5.264 14 C -0.054 4.054 15 C -0.056 4.056 16 N -0.267 5.267 17 C 0.045 3.955 18 C -0.553 4.553 19 H 0.056 0.944 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.771 3.229 23 H -0.186 1.186 24 H -0.209 1.209 25 H -0.179 1.179 26 C -0.081 4.081 27 C -0.057 4.057 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.106 0.894 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.070 0.930 42 H -0.002 1.002 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.101 0.899 47 H 0.131 0.869 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.185 22.359 -9.766 30.430 hybrid contribution 1.221 -0.761 0.890 1.692 sum -16.963 21.598 -8.876 28.862 Atomic orbital electron populations 1.81368 1.15458 1.10576 1.10858 1.29442 0.95309 0.91441 0.91325 1.19984 0.79163 1.03698 1.05657 1.21795 0.77598 0.98808 1.03564 1.47767 1.06949 1.50634 1.27969 1.21389 0.99182 0.93966 0.85866 1.19895 1.01208 0.97364 0.89617 1.29457 0.92320 0.92538 0.93359 1.81229 1.11815 1.11789 1.13289 1.20900 0.87622 0.78821 0.82015 1.90757 1.15964 1.61809 1.74437 1.22258 0.94011 0.99626 0.94012 1.61800 1.26086 1.30432 1.08095 1.22080 0.95382 0.91857 0.96113 1.21871 0.95460 0.95976 0.92244 1.62066 1.27253 1.28973 1.08423 1.19911 0.90046 0.92850 0.92740 1.21258 1.22696 1.09316 1.02014 0.94396 1.25853 0.95944 0.94594 1.02645 1.70052 1.31130 1.17703 1.40013 0.85709 0.77835 0.79686 0.79679 1.18612 1.20857 1.17857 1.22296 0.96241 0.92386 0.97184 1.22159 0.94374 0.98656 0.90524 0.85470 0.84333 0.86034 0.87894 0.85706 0.90903 0.87665 0.83387 0.84272 0.89424 0.94743 0.89359 0.96789 0.93024 1.00180 0.95058 0.92464 0.95655 0.89902 0.86922 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -7.36 18.54 20.00 0.37 -6.99 16 2 C 0.24 1.17 15.43 89.44 1.38 2.55 16 3 C -0.04 0.20 6.02 28.79 0.17 0.37 16 4 C 0.11 -0.48 5.16 86.38 0.45 -0.03 16 5 N -0.60 -1.31 2.47 -821.80 -2.03 -3.34 16 6 C 0.12 0.28 5.36 86.38 0.46 0.74 16 7 C -0.04 -0.14 6.03 28.79 0.17 0.04 16 8 C 0.24 3.00 15.43 89.46 1.38 4.38 16 9 N -0.50 -10.58 18.53 19.98 0.37 -10.21 16 10 C 0.52 6.21 7.37 87.66 0.65 6.86 16 11 O -0.55 -12.95 13.92 -3.04 -0.04 -12.99 16 12 C 0.03 0.33 4.00 85.56 0.34 0.67 16 13 N -0.54 -11.99 4.45 -900.26 -4.00 -15.99 16 14 C 0.07 2.18 5.26 86.31 0.45 2.64 16 15 C 0.07 2.94 5.43 86.31 0.47 3.40 16 16 N -0.54 -22.38 4.70 -900.29 -4.23 -26.61 16 17 C 0.17 8.37 3.79 85.56 0.32 8.70 16 18 C -0.51 -30.15 9.03 25.60 0.23 -29.92 16 19 H 0.04 2.47 7.38 -2.91 -0.02 2.45 16 20 C 0.01 0.40 5.47 84.66 0.46 0.86 16 21 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 22 Si 0.95 44.54 27.47 68.60 1.88 46.42 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.25 -11.35 6.54 99.48 0.65 -10.69 16 26 C 0.05 1.45 5.61 86.31 0.48 1.94 16 27 C 0.07 1.49 5.61 86.31 0.48 1.98 16 28 H 0.13 -0.77 7.20 -2.39 -0.02 -0.79 16 29 H 0.14 -1.13 8.14 -2.39 -0.02 -1.15 16 30 H 0.12 -1.05 8.07 -2.39 -0.02 -1.07 16 31 H 0.10 -0.52 6.45 -2.39 -0.02 -0.54 16 32 H 0.12 -0.54 8.07 -2.39 -0.02 -0.56 16 33 H 0.07 0.63 7.42 -2.39 -0.02 0.61 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.14 0.43 7.04 -2.38 -0.02 0.42 16 37 H 0.09 0.61 7.39 -2.39 -0.02 0.60 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 2.65 5.85 -2.39 -0.01 2.64 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.05 2.42 6.79 -2.39 -0.02 2.40 16 42 H -0.02 -0.97 7.18 -2.39 -0.02 -0.99 16 43 H 0.03 1.47 7.46 -2.39 -0.02 1.45 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 45 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 47 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 48 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -91.79 397.50 1.44 -90.35 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: 0.91 Total: -6.32 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 7.91 Total: 5.17 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -9.23 Total: -122.63 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.04 Total: -12.99 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -91.79 1.44 -90.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647360110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.493 kcal (2) G-P(sol) polarization free energy of solvation -91.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds