Wall clock time and date at job start Tue Mar 31 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99624 * 2 1 4 4 S 1.65593 * 120.00079 * 179.97438 * 2 1 3 5 5 C 1.81399 * 108.33313 * 357.53274 * 4 2 1 6 6 O 1.42099 * 108.33079 * 122.47001 * 4 2 1 7 7 N 1.49353 * 108.73227 * 239.99877 * 4 2 1 8 8 C 1.46502 * 120.00019 * 180.02562 * 7 4 2 9 9 C 1.53002 * 109.47053 * 180.02562 * 8 7 4 10 10 C 1.53118 * 109.52040 * 294.67614 * 9 8 7 11 11 C 1.53032 * 109.27836 * 182.44101 * 10 9 8 12 12 N 1.46848 * 109.52125 * 59.18413 * 11 10 9 13 13 C 1.46904 * 110.99983 * 174.15927 * 12 11 10 14 14 C 1.52991 * 109.47133 * 314.20841 * 13 12 11 15 15 H 1.09001 * 109.47438 * 60.00574 * 14 13 12 16 16 O 1.42895 * 109.47699 * 299.99931 * 14 13 12 17 17 C 1.50709 * 109.47271 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99521 * 0.02562 * 17 14 13 19 19 C 1.37868 * 119.99841 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00630 * 0.02562 * 19 17 14 21 21 Si 1.86808 * 119.99513 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47167 * 60.00175 * 21 19 17 23 23 H 1.48509 * 109.46851 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47339 * 299.99688 * 21 19 17 25 25 C 1.46852 * 111.19793 * 298.25696 * 12 11 10 26 26 C 1.53032 * 109.52399 * 61.74230 * 25 12 11 27 27 H 1.09000 * 109.46847 * 240.00316 * 1 2 3 28 28 H 1.09001 * 109.46924 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.46843 * 120.00197 * 1 2 3 30 30 H 1.08999 * 109.47041 * 269.99599 * 3 2 1 31 31 H 1.09001 * 109.47796 * 29.99986 * 3 2 1 32 32 H 1.09001 * 109.47282 * 149.99995 * 3 2 1 33 33 H 1.08999 * 109.46695 * 61.10625 * 5 4 2 34 34 H 1.08998 * 109.46738 * 181.10507 * 5 4 2 35 35 H 1.08998 * 109.46993 * 301.10142 * 5 4 2 36 36 H 1.09004 * 109.46734 * 299.99971 * 8 7 4 37 37 H 1.08998 * 109.47424 * 59.99700 * 8 7 4 38 38 H 1.08998 * 109.52318 * 54.87270 * 9 8 7 39 39 H 1.09000 * 109.50828 * 302.38636 * 10 9 8 40 40 H 1.09006 * 109.49945 * 62.50746 * 10 9 8 41 41 H 1.09003 * 109.46645 * 299.16651 * 11 10 9 42 42 H 1.08996 * 109.45663 * 179.18989 * 11 10 9 43 43 H 1.09006 * 109.47109 * 74.20974 * 13 12 11 44 44 H 1.09001 * 109.46936 * 194.20539 * 13 12 11 45 45 H 0.96700 * 114.00159 * 300.00689 * 16 14 13 46 46 H 0.97004 * 120.00409 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.45748 * 301.72357 * 25 12 11 48 48 H 1.08999 * 109.45241 * 181.75467 * 25 12 11 49 49 H 1.08995 * 109.50140 * 180.87871 * 26 25 12 50 50 H 1.09002 * 109.50411 * 60.75745 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 6 1.0885 -2.7883 0.0754 6 8 3.1436 -1.4595 -1.1374 7 7 3.1453 -1.4953 1.2256 8 6 3.9881 -2.6676 1.4737 9 6 4.7524 -2.4778 2.7855 10 6 5.7303 -1.3082 2.6432 11 6 6.5346 -1.1619 3.9369 12 7 7.2675 -2.4064 4.2024 13 6 8.1583 -2.2558 5.3608 14 6 8.9247 -0.9366 5.2467 15 1 8.2182 -0.1069 5.2216 16 8 9.7002 -0.9383 4.0466 17 6 9.8381 -0.7818 6.4354 18 1 9.8692 -1.5480 7.1959 19 6 10.6340 0.3380 6.5520 20 7 10.5958 1.2712 5.6262 21 14 11.7667 0.5294 8.0251 22 1 12.7298 -0.6004 8.0591 23 1 12.5105 1.8101 7.9144 24 1 10.9608 0.5307 9.2724 25 6 6.3470 -3.5351 4.3896 26 6 5.5370 -3.7522 3.1095 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1386 0.5138 33 1 0.4429 -2.7491 -0.8020 34 1 1.6153 -3.7423 0.0965 35 1 0.4836 -2.6873 0.9765 36 1 3.3618 -3.5570 1.5440 37 1 4.6965 -2.7860 0.6538 38 1 4.0480 -2.2691 3.5906 39 1 6.4092 -1.5003 1.8123 40 1 5.1742 -0.3898 2.4547 41 1 5.8564 -0.9560 4.7650 42 1 7.2419 -0.3390 3.8335 43 1 7.5668 -2.2544 6.2763 44 1 8.8649 -3.0855 5.3860 45 1 10.3515 -1.6516 4.0002 46 1 11.1560 2.0589 5.7081 47 1 5.6697 -3.3181 5.2157 48 1 6.9180 -4.4357 4.6153 49 1 4.8429 -4.5801 3.2542 50 1 6.2128 -3.9828 2.2860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650062927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:32 Heat of formation + Delta-G solvation = -32.121209 kcal Electronic energy + Delta-G solvation = -27718.193116 eV Core-core repulsion = 23908.935026 eV Total energy + Delta-G solvation = -3809.258090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -38.74462 -36.72766 -36.37887 -35.99223 -34.45872 -32.10637 -31.90761 -30.32323 -30.20677 -28.33226 -28.00539 -26.15392 -25.09533 -23.79297 -22.79674 -21.50320 -19.88750 -19.06158 -18.62793 -17.23789 -16.95654 -16.50253 -16.26756 -15.13519 -14.86465 -14.83157 -14.59246 -14.43429 -14.27237 -14.03209 -13.74133 -13.67714 -13.62973 -13.50455 -13.18770 -13.05954 -12.81409 -12.44966 -12.40447 -12.27511 -12.04822 -11.83666 -11.50371 -11.46011 -11.03119 -10.84883 -10.75937 -10.71393 -10.61286 -10.30219 -10.04095 -9.85644 -9.81534 -9.68298 -9.12948 -8.76357 -8.63508 -8.44653 -7.94201 -7.45797 -5.92482 -4.10256 -0.38408 2.18343 3.33956 3.37235 3.38956 3.40831 3.87576 4.15423 4.42802 4.46172 4.53850 4.71522 4.75132 4.81304 5.04540 5.13874 5.20026 5.20805 5.27769 5.34133 5.35306 5.41108 5.52678 5.57035 5.69556 5.80060 5.89472 5.91239 5.99601 6.08225 6.20243 6.23920 6.35476 6.36385 6.45335 6.54753 6.60432 6.67706 6.82956 6.89165 7.00250 7.01692 7.77096 7.88135 7.91650 8.00964 8.30606 8.93306 9.54667 9.71196 11.11620 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002370 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.761423 B =11813.068210 C =12602.868904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.961 5.961 3 C 0.099 3.901 4 S 2.511 3.489 5 C -0.686 4.686 6 O -0.975 6.975 7 N -1.127 6.127 8 C 0.139 3.861 9 C -0.059 4.059 10 C -0.097 4.097 11 C 0.052 3.948 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.230 3.770 15 H 0.058 0.942 16 O -0.555 6.555 17 C -0.573 4.573 18 H 0.053 0.947 19 C 0.079 3.921 20 N -0.859 5.859 21 Si 0.889 3.111 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.057 3.943 26 C -0.113 4.113 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.094 0.906 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.344 0.656 46 H 0.260 0.740 47 H 0.023 0.977 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.862 -6.098 -11.805 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.796 5.796 3 C -0.046 4.046 4 S 2.605 3.395 5 C -0.837 4.837 6 O -0.950 6.950 7 N -1.037 6.037 8 C 0.007 3.993 9 C -0.081 4.081 10 C -0.135 4.135 11 C -0.076 4.076 12 N -0.253 5.253 13 C -0.097 4.097 14 C 0.172 3.828 15 H 0.076 0.924 16 O -0.357 6.357 17 C -0.612 4.612 18 H 0.072 0.928 19 C -0.126 4.126 20 N -0.495 5.495 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.072 4.072 26 C -0.151 4.151 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.112 0.888 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.187 0.813 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.383 -5.001 -12.751 27.966 hybrid contribution -0.189 -0.957 1.637 1.906 sum -24.572 -5.958 -11.115 27.619 Atomic orbital electron populations 1.21782 0.78076 1.05076 1.01373 1.55604 1.13821 1.18667 1.91494 1.21706 0.97246 0.83444 1.02188 1.10566 0.76380 0.75656 0.76947 1.30765 1.20404 1.22599 1.09971 1.93475 1.58402 1.84639 1.58533 1.74665 1.39325 1.38294 1.51371 1.20974 0.92964 0.86607 0.98715 1.20962 0.96050 0.95512 0.95576 1.21484 0.96371 0.97882 0.97749 1.22218 0.96124 0.93514 0.95710 1.61955 1.19446 1.03772 1.40165 1.23021 0.95139 1.02248 0.89276 1.19432 0.89678 0.89832 0.83858 0.92426 1.86539 1.52909 1.54348 1.41891 1.21640 1.25606 1.05849 1.08070 0.92841 1.25018 0.96539 0.95499 0.95593 1.70068 1.38233 1.08592 1.32589 0.86750 0.81001 0.77380 0.83267 1.20179 1.21244 1.20284 1.22020 0.94213 0.95220 0.95730 1.21663 0.98170 0.96698 0.98602 0.91710 0.89098 0.92248 0.92397 0.90311 0.89727 0.87192 0.85648 0.85670 0.94473 0.93559 0.91189 0.91861 0.91250 0.96285 0.88816 0.95865 0.91980 0.81274 0.92999 0.95886 0.91584 0.92430 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 9.81 59.85 0.59 0.87 16 2 N -0.96 -6.97 3.64 -129.20 -0.47 -7.44 16 3 C 0.10 0.74 10.70 59.85 0.64 1.38 16 4 S 2.51 24.35 4.57 -107.50 -0.49 23.86 16 5 C -0.69 -3.94 9.46 101.05 0.96 -2.99 16 6 O -0.97 -14.25 18.05 -35.23 -0.64 -14.88 16 7 N -1.13 -14.00 10.01 -10.61 -0.11 -14.11 16 8 C 0.14 1.80 5.30 -4.04 -0.02 1.77 16 9 C -0.06 -0.86 2.46 -90.49 -0.22 -1.09 16 10 C -0.10 -1.67 5.24 -26.65 -0.14 -1.81 16 11 C 0.05 1.03 4.85 -3.84 -0.02 1.01 16 12 N -0.53 -10.41 4.67 -234.67 -1.10 -11.50 16 13 C 0.03 0.67 4.87 -3.83 -0.02 0.66 16 14 C 0.23 6.01 2.11 -27.88 -0.06 5.95 16 15 H 0.06 1.65 6.21 -51.93 -0.32 1.32 16 16 O -0.56 -14.91 12.40 -35.23 -0.44 -15.35 16 17 C -0.57 -16.15 8.76 -34.44 -0.30 -16.45 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 20 N -0.86 -25.92 12.84 55.43 0.71 -25.21 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.06 0.92 5.42 -3.83 -0.02 0.90 16 26 C -0.11 -1.55 5.38 -26.65 -0.14 -1.70 16 27 H 0.06 0.13 7.86 -51.93 -0.41 -0.27 16 28 H 0.09 0.18 7.79 -51.93 -0.40 -0.22 16 29 H 0.06 0.11 8.06 -51.93 -0.42 -0.31 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 32 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 33 H 0.11 0.43 8.06 -51.92 -0.42 0.01 16 34 H 0.12 0.72 7.73 -51.92 -0.40 0.32 16 35 H 0.12 0.52 7.92 -51.93 -0.41 0.11 16 36 H 0.04 0.37 7.51 -51.93 -0.39 -0.02 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 2.16 5.66 -51.93 -0.29 1.86 16 43 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.34 8.41 9.04 45.56 0.41 8.82 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -36.66 401.92 -8.82 -45.49 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.48 Total: 5.84 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 1.14 Total: -9.33 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.96 Total: -58.27 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.07 Total: -30.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 24.35 SS G_CDS: -0.49 Total: 23.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.66 -8.82 -45.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650062927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.366 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds