Wall clock time and date at job start Tue Mar 31 2020 17:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99624 * 2 1 4 4 S 1.65593 * 120.00079 * 179.97438 * 2 1 3 5 5 C 1.81399 * 108.33313 * 357.53274 * 4 2 1 6 6 O 1.42099 * 108.33079 * 122.47001 * 4 2 1 7 7 N 1.49353 * 108.73227 * 239.99877 * 4 2 1 8 8 C 1.46502 * 120.00019 * 180.02562 * 7 4 2 9 9 C 1.53002 * 109.47053 * 180.02562 * 8 7 4 10 10 C 1.53118 * 109.52040 * 294.67614 * 9 8 7 11 11 C 1.53032 * 109.27836 * 182.44101 * 10 9 8 12 12 N 1.46848 * 109.52125 * 59.18413 * 11 10 9 13 13 C 1.46904 * 110.99983 * 174.15927 * 12 11 10 14 14 C 1.52991 * 109.47133 * 314.20841 * 13 12 11 15 15 H 1.09001 * 109.47438 * 60.00574 * 14 13 12 16 16 O 1.42895 * 109.47699 * 299.99931 * 14 13 12 17 17 C 1.50709 * 109.47271 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99521 * 0.02562 * 17 14 13 19 19 C 1.37868 * 119.99841 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00630 * 0.02562 * 19 17 14 21 21 Si 1.86808 * 119.99513 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47167 * 60.00175 * 21 19 17 23 23 H 1.48509 * 109.46851 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47339 * 299.99688 * 21 19 17 25 25 C 1.46852 * 111.19793 * 298.25696 * 12 11 10 26 26 C 1.53032 * 109.52399 * 61.74230 * 25 12 11 27 27 H 1.09000 * 109.46847 * 240.00316 * 1 2 3 28 28 H 1.09001 * 109.46924 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.46843 * 120.00197 * 1 2 3 30 30 H 1.08999 * 109.47041 * 269.99599 * 3 2 1 31 31 H 1.09001 * 109.47796 * 29.99986 * 3 2 1 32 32 H 1.09001 * 109.47282 * 149.99995 * 3 2 1 33 33 H 1.08999 * 109.46695 * 61.10625 * 5 4 2 34 34 H 1.08998 * 109.46738 * 181.10507 * 5 4 2 35 35 H 1.08998 * 109.46993 * 301.10142 * 5 4 2 36 36 H 1.09004 * 109.46734 * 299.99971 * 8 7 4 37 37 H 1.08998 * 109.47424 * 59.99700 * 8 7 4 38 38 H 1.08998 * 109.52318 * 54.87270 * 9 8 7 39 39 H 1.09000 * 109.50828 * 302.38636 * 10 9 8 40 40 H 1.09006 * 109.49945 * 62.50746 * 10 9 8 41 41 H 1.09003 * 109.46645 * 299.16651 * 11 10 9 42 42 H 1.08996 * 109.45663 * 179.18989 * 11 10 9 43 43 H 1.09006 * 109.47109 * 74.20974 * 13 12 11 44 44 H 1.09001 * 109.46936 * 194.20539 * 13 12 11 45 45 H 0.96700 * 114.00159 * 300.00689 * 16 14 13 46 46 H 0.97004 * 120.00409 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.45748 * 301.72357 * 25 12 11 48 48 H 1.08999 * 109.45241 * 181.75467 * 25 12 11 49 49 H 1.08995 * 109.50140 * 180.87871 * 26 25 12 50 50 H 1.09002 * 109.50411 * 60.75745 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 6 1.0885 -2.7883 0.0754 6 8 3.1436 -1.4595 -1.1374 7 7 3.1453 -1.4953 1.2256 8 6 3.9881 -2.6676 1.4737 9 6 4.7524 -2.4778 2.7855 10 6 5.7303 -1.3082 2.6432 11 6 6.5346 -1.1619 3.9369 12 7 7.2675 -2.4064 4.2024 13 6 8.1583 -2.2558 5.3608 14 6 8.9247 -0.9366 5.2467 15 1 8.2182 -0.1069 5.2216 16 8 9.7002 -0.9383 4.0466 17 6 9.8381 -0.7818 6.4354 18 1 9.8692 -1.5480 7.1959 19 6 10.6340 0.3380 6.5520 20 7 10.5958 1.2712 5.6262 21 14 11.7667 0.5294 8.0251 22 1 12.7298 -0.6004 8.0591 23 1 12.5105 1.8101 7.9144 24 1 10.9608 0.5307 9.2724 25 6 6.3470 -3.5351 4.3896 26 6 5.5370 -3.7522 3.1095 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 2.3791 1.5834 -1.0277 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1386 0.5138 33 1 0.4429 -2.7491 -0.8020 34 1 1.6153 -3.7423 0.0965 35 1 0.4836 -2.6873 0.9765 36 1 3.3618 -3.5570 1.5440 37 1 4.6965 -2.7860 0.6538 38 1 4.0480 -2.2691 3.5906 39 1 6.4092 -1.5003 1.8123 40 1 5.1742 -0.3898 2.4547 41 1 5.8564 -0.9560 4.7650 42 1 7.2419 -0.3390 3.8335 43 1 7.5668 -2.2544 6.2763 44 1 8.8649 -3.0855 5.3860 45 1 10.3515 -1.6516 4.0002 46 1 11.1560 2.0589 5.7081 47 1 5.6697 -3.3181 5.2157 48 1 6.9180 -4.4357 4.6153 49 1 4.8429 -4.5801 3.2542 50 1 6.2128 -3.9828 2.2860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650062927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:31 Heat of formation + Delta-G solvation = -63.809148 kcal Electronic energy + Delta-G solvation = -27719.567208 eV Core-core repulsion = 23908.935026 eV Total energy + Delta-G solvation = -3810.632182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.21182 -37.80805 -37.31713 -37.12361 -35.84951 -34.21623 -33.27264 -31.69008 -30.75670 -30.10434 -28.50883 -27.65328 -25.90015 -25.28766 -24.28653 -22.87331 -21.57310 -20.45440 -19.30460 -19.10372 -17.91957 -17.21251 -16.94119 -16.69001 -16.64488 -16.22344 -16.06068 -15.54175 -15.51453 -15.37710 -15.12756 -14.81644 -14.58125 -14.21491 -14.13857 -14.08305 -13.77279 -13.72358 -13.42931 -13.32128 -13.07975 -12.92839 -12.81875 -12.80649 -12.69804 -12.56757 -12.43190 -12.23525 -12.07287 -11.99505 -11.61679 -11.30841 -11.14559 -10.82580 -10.61050 -10.28953 -10.04624 -9.91177 -9.42497 -9.05917 -8.11656 -6.38109 -1.05727 1.40371 1.42997 1.51052 1.59284 2.39489 2.67504 3.12471 3.16530 3.22753 3.72256 3.96859 3.99998 4.02606 4.11367 4.12527 4.31903 4.33489 4.39853 4.43043 4.48312 4.53538 4.61733 4.62028 4.67935 4.70182 4.74041 4.81555 4.85176 4.88658 4.95654 4.99549 5.02665 5.03954 5.10612 5.11378 5.20413 5.33601 5.40071 5.42795 5.61452 5.64183 5.78299 5.96459 6.05330 6.28952 6.43703 6.75347 7.35622 7.62201 8.92740 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.002370 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.761423 B =11813.068210 C =12602.868904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.959 5.959 3 C 0.094 3.906 4 S 2.515 3.485 5 C -0.655 4.655 6 O -1.039 7.039 7 N -1.181 6.181 8 C 0.141 3.859 9 C -0.054 4.054 10 C -0.086 4.086 11 C 0.061 3.939 12 N -0.538 5.538 13 C 0.047 3.953 14 C 0.231 3.769 15 H 0.023 0.977 16 O -0.571 6.571 17 C -0.589 4.589 18 H 0.060 0.940 19 C 0.024 3.976 20 N -0.901 5.901 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.053 3.947 26 C -0.106 4.106 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.070 0.930 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.050 0.950 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.353 0.647 46 H 0.261 0.739 47 H 0.028 0.972 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.750 -8.292 -11.186 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.795 5.795 3 C -0.051 4.051 4 S 2.614 3.386 5 C -0.813 4.813 6 O -1.016 7.016 7 N -1.090 6.090 8 C 0.009 3.991 9 C -0.075 4.075 10 C -0.124 4.124 11 C -0.067 4.067 12 N -0.263 5.263 13 C -0.081 4.081 14 C 0.173 3.827 15 H 0.041 0.959 16 O -0.374 6.374 17 C -0.628 4.628 18 H 0.078 0.922 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.074 4.074 26 C -0.145 4.145 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.197 0.803 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.099 0.901 49 H 0.115 0.885 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.250 -7.175 -12.124 30.676 hybrid contribution 0.495 -0.259 1.364 1.474 sum -26.755 -7.434 -10.760 29.781 Atomic orbital electron populations 1.22217 0.75292 1.06936 1.03356 1.55530 1.15394 1.17306 1.91278 1.21738 0.96823 0.84351 1.02206 1.09442 0.77427 0.76949 0.74752 1.30445 1.18907 1.18980 1.12920 1.93419 1.62193 1.85967 1.60032 1.74420 1.43228 1.40378 1.50953 1.20826 0.93312 0.88386 0.96543 1.20893 0.95379 0.94288 0.96964 1.21350 0.96308 0.99436 0.95351 1.22024 0.95147 0.92562 0.96930 1.61937 1.20584 1.04634 1.39111 1.22682 0.95356 0.99886 0.90172 1.19285 0.89245 0.91039 0.83127 0.95924 1.86497 1.53475 1.55123 1.42305 1.22036 1.25878 1.06123 1.08715 0.92214 1.25938 0.98243 0.95030 0.98633 1.70229 1.39365 1.09244 1.34913 0.85570 0.78805 0.77522 0.79390 1.19070 1.21003 1.19292 1.22183 0.94032 0.93898 0.97312 1.21657 0.98356 0.97478 0.96962 0.89786 0.87520 0.90172 0.92408 0.87656 0.92563 0.84292 0.84661 0.82842 0.91214 0.95977 0.91076 0.93877 0.92050 0.96539 0.93197 0.95903 0.91114 0.80282 0.93020 0.95409 0.90128 0.88502 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 9.81 127.77 1.25 1.48 16 2 N -0.96 -12.68 3.64 -562.69 -2.05 -14.73 16 3 C 0.09 1.43 10.70 127.77 1.37 2.80 16 4 S 2.51 46.54 4.57 -56.49 -0.26 46.28 16 5 C -0.66 -4.60 9.46 113.37 1.07 -3.53 16 6 O -1.04 -31.52 18.05 -148.98 -2.69 -34.21 16 7 N -1.18 -29.43 10.01 -187.48 -1.88 -31.31 16 8 C 0.14 3.58 5.30 86.38 0.46 4.04 16 9 C -0.05 -1.55 2.46 -10.71 -0.03 -1.58 16 10 C -0.09 -3.18 5.24 30.64 0.16 -3.02 16 11 C 0.06 2.59 4.85 86.32 0.42 3.00 16 12 N -0.54 -21.62 4.67 -896.36 -4.19 -25.81 16 13 C 0.05 2.10 4.87 86.30 0.42 2.52 16 14 C 0.23 12.59 2.11 29.85 0.06 12.65 16 15 H 0.02 1.40 6.21 -2.39 -0.01 1.39 16 16 O -0.57 -32.12 12.40 -148.98 -1.85 -33.97 16 17 C -0.59 -33.81 8.76 25.60 0.22 -33.58 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 19 C 0.02 1.38 5.40 84.65 0.46 1.84 16 20 N -0.90 -56.08 12.84 21.44 0.28 -55.80 16 21 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.05 1.66 5.42 86.32 0.47 2.13 16 26 C -0.11 -2.75 5.38 30.65 0.16 -2.58 16 27 H 0.08 -0.01 7.86 -2.39 -0.02 -0.03 16 28 H 0.11 0.08 7.79 -2.39 -0.02 0.06 16 29 H 0.08 -0.04 8.06 -2.39 -0.02 -0.06 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.98 7.92 -2.39 -0.02 0.96 16 32 H 0.06 1.18 7.97 -2.39 -0.02 1.16 16 33 H 0.14 0.32 8.06 -2.39 -0.02 0.30 16 34 H 0.14 0.92 7.73 -2.39 -0.02 0.90 16 35 H 0.15 0.37 7.92 -2.39 -0.02 0.36 16 36 H 0.07 1.22 7.51 -2.39 -0.02 1.20 16 37 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 2.31 7.84 -2.38 -0.02 2.30 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 2.51 5.66 -2.39 -0.01 2.50 16 43 H 0.02 1.01 8.08 -2.38 -0.02 0.99 16 44 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.35 17.88 9.04 -74.06 -0.67 17.21 16 46 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 47 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 49 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -84.92 401.92 -3.88 -88.80 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.23 Total: 27.86 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 6.50 Total: -13.84 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -7.84 Total: -127.65 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -4.54 Total: -68.18 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 46.54 SS G_CDS: -0.26 Total: 46.28 kcal Total: -84.92 -3.88 -88.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650062927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.989 kcal (2) G-P(sol) polarization free energy of solvation -84.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds