Wall clock time and date at job start Tue Mar 31 2020 17:59:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86799 * 119.99862 * 2 1
4 4 H 1.48506 * 109.46993 * 179.97438 * 3 2 1
5 5 H 1.48503 * 109.47464 * 299.99822 * 3 2 1
6 6 H 1.48496 * 109.47378 * 60.00347 * 3 2 1
7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1
9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1
10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2
11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7
12 12 C 1.55154 * 101.58289 * 322.93718 * 11 10 9
13 13 H 1.08994 * 110.71922 * 276.96131 * 12 11 10
14 14 C 1.53003 * 110.72254 * 153.86462 * 12 11 10
15 15 N 1.46494 * 109.47093 * 174.99951 * 14 12 11
16 16 C 1.34776 * 119.99924 * 180.02562 * 15 14 12
17 17 O 1.21287 * 120.00227 * 359.97438 * 16 15 14
18 18 C 1.50702 * 120.00539 * 179.97438 * 16 15 14
19 19 N 1.46497 * 109.47478 * 180.02562 * 18 16 15
20 20 N 1.29103 * 126.00491 * 269.69025 * 19 18 16
21 21 N 1.29025 * 110.25812 * 179.77831 * 20 19 18
22 22 C 1.32909 * 108.63177 * 0.41463 * 21 20 19
23 23 C 1.34395 * 126.00676 * 90.00163 * 19 18 16
24 24 C 1.50537 * 129.25515 * 0.20833 * 23 19 18
25 25 C 1.53432 * 108.32509 * 163.46308 * 24 23 19
26 26 C 1.53102 * 109.55374 * 49.71631 * 25 24 23
27 27 C 1.50601 * 129.16469 * 179.86458 * 22 21 20
28 28 C 1.47290 * 125.79079 * 180.02562 * 9 7 2
29 29 H 0.97001 * 119.99611 * 0.02562 * 1 2 3
30 30 H 1.09002 * 110.36696 * 85.26297 * 10 9 7
31 31 H 1.08995 * 110.36608 * 323.05133 * 10 9 7
32 32 H 1.09008 * 111.00494 * 81.01141 * 11 10 9
33 33 H 1.09000 * 111.00857 * 204.82205 * 11 10 9
34 34 H 1.09000 * 109.46700 * 294.99905 * 14 12 11
35 35 H 1.09004 * 109.46934 * 55.00029 * 14 12 11
36 36 H 0.96994 * 120.00707 * 0.02562 * 15 14 12
37 37 H 1.09004 * 109.46702 * 300.00679 * 18 16 15
38 38 H 1.09003 * 109.46895 * 59.99543 * 18 16 15
39 39 H 1.08995 * 109.69181 * 283.17169 * 24 23 19
40 40 H 1.08998 * 109.69116 * 43.71230 * 24 23 19
41 41 H 1.08995 * 109.45911 * 169.74769 * 25 24 23
42 42 H 1.09007 * 109.45618 * 289.71051 * 25 24 23
43 43 H 1.08997 * 109.45699 * 49.97308 * 26 25 24
44 44 H 1.09006 * 109.45559 * 169.90445 * 26 25 24
45 45 H 1.09001 * 109.68883 * 43.75589 * 27 22 21
46 46 H 1.09004 * 109.68544 * 283.18358 * 27 22 21
47 47 H 1.09004 * 109.85762 * 59.49821 * 28 9 7
48 48 H 1.08995 * 110.00297 * 298.42768 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8915 2.3965 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0001
9 7 1.3255 -2.3880 -0.0016
10 6 -0.1416 -2.5331 -0.0028
11 6 -0.4048 -3.9317 0.6089
12 6 0.7740 -4.7541 0.0247
13 1 0.5403 -5.1019 -0.9815
14 6 1.1159 -5.9337 0.9372
15 7 2.1484 -6.7578 0.3039
16 6 2.6087 -7.8594 0.9291
17 8 2.1686 -8.1684 2.0162
18 6 3.6704 -8.7076 0.2775
19 7 3.9969 -9.8376 1.1507
20 7 4.9109 -9.8529 2.0623
21 7 4.9349 -11.0004 2.6518
22 6 4.0070 -11.7786 2.1041
23 6 3.4016 -11.0424 1.1397
24 6 2.2860 -11.5457 0.2631
25 6 2.2533 -13.0769 0.3554
26 6 2.2669 -13.5020 1.8262
27 6 3.6426 -13.2017 2.4354
28 6 1.9294 -3.7314 -0.0017
29 1 -0.4849 0.8401 -0.0004
30 1 -0.5266 -2.4860 -1.0215
31 1 -0.5999 -1.7581 0.6114
32 1 -0.3558 -3.8977 1.6973
33 1 -1.3630 -4.3301 0.2754
34 1 1.4849 -5.5593 1.8920
35 1 0.2223 -6.5353 1.1036
36 1 2.5007 -6.5107 -0.5654
37 1 3.3011 -9.0816 -0.6775
38 1 4.5642 -8.1064 0.1110
39 1 1.3359 -11.1367 0.6067
40 1 2.4645 -11.2430 -0.7687
41 1 1.3474 -13.4502 -0.1221
42 1 3.1265 -13.4898 -0.1498
43 1 1.5005 -12.9505 2.3706
44 1 2.0640 -14.5707 1.8971
45 1 3.6006 -13.3277 3.5173
46 1 4.3863 -13.8787 2.0149
47 1 2.5552 -3.8562 0.8821
48 1 2.5277 -3.8711 -0.9020
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001663620952.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:59:23
Heat of formation + Delta-G solvation = 51.430896 kcal
Electronic energy + Delta-G solvation = -28300.680495 eV
Core-core repulsion = 24391.894297 eV
Total energy + Delta-G solvation = -3908.786199 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.191 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-44.44725 -40.98459 -39.29647 -37.94636 -36.25176 -35.82088 -34.38987 -31.96239
-31.42832 -31.09323 -30.29057 -29.13385 -27.22987 -25.28928 -25.05346 -23.61354
-22.99072 -22.13837 -21.55428 -21.03356 -20.51658 -19.05314 -18.63367 -18.42024
-17.28411 -17.07875 -16.75401 -16.54323 -16.21579 -15.83637 -15.54452 -14.94407
-14.86763 -14.82940 -14.72600 -14.59218 -14.31643 -14.27614 -13.57448 -13.54517
-13.36423 -13.15905 -13.04401 -12.82816 -12.72494 -12.55440 -12.23232 -12.02230
-11.99297 -11.89471 -11.83794 -11.80786 -11.61817 -11.51321 -11.34590 -11.32511
-10.80826 -10.75349 -10.25111 -9.82311 -8.88783 -7.79113 -5.22841 0.46231
1.20720 1.32996 1.45149 1.46182 1.50924 1.56042 2.07995 2.47833
3.18602 3.30633 3.44719 3.53547 3.62771 3.72717 3.78804 3.90606
3.92665 3.96718 4.04110 4.05496 4.12125 4.43677 4.44618 4.57791
4.59613 4.61573 4.63277 4.67689 4.77661 4.90033 4.92609 5.02663
5.03094 5.09904 5.12294 5.20875 5.23380 5.24037 5.35327 5.39086
5.46827 5.47190 5.57499 5.66018 5.82488 6.31246 6.34792 7.01115
7.10320 7.45520 7.78192 8.41141 9.22692
Molecular weight = 333.19amu
Principal moments of inertia in cm(-1)
A = 0.027996 B = 0.002001 C = 0.001922
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.891577 B =13990.455780 C =14567.615965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.948 5.948
2 C -0.070 4.070
3 Si 0.978 3.022
4 H -0.267 1.267
5 H -0.291 1.291
6 H -0.294 1.294
7 C -0.236 4.236
8 H 0.080 0.920
9 N -0.630 5.630
10 C 0.150 3.850
11 C -0.124 4.124
12 C -0.090 4.090
13 H 0.106 0.894
14 C 0.145 3.855
15 N -0.701 5.701
16 C 0.501 3.499
17 O -0.577 6.577
18 C 0.091 3.909
19 N -0.269 5.269
20 N -0.130 5.130
21 N -0.301 5.301
22 C -0.043 4.043
23 C -0.002 4.002
24 C -0.048 4.048
25 C -0.110 4.110
26 C -0.118 4.118
27 C -0.033 4.033
28 C 0.135 3.865
29 H 0.246 0.754
30 H -0.007 1.007
31 H 0.068 0.932
32 H 0.057 0.943
33 H 0.092 0.908
34 H 0.046 0.954
35 H 0.079 0.921
36 H 0.422 0.578
37 H 0.185 0.815
38 H 0.160 0.840
39 H 0.084 0.916
40 H 0.110 0.890
41 H 0.101 0.899
42 H 0.077 0.923
43 H 0.056 0.944
44 H 0.099 0.901
45 H 0.076 0.924
46 H 0.094 0.906
47 H 0.017 0.983
48 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.167 -29.149 -6.106 29.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.598 5.598
2 C -0.262 4.262
3 Si 0.806 3.194
4 H -0.192 1.192
5 H -0.218 1.218
6 H -0.221 1.221
7 C -0.365 4.365
8 H 0.097 0.903
9 N -0.356 5.356
10 C 0.025 3.975
11 C -0.163 4.163
12 C -0.109 4.109
13 H 0.125 0.875
14 C 0.021 3.979
15 N -0.354 5.354
16 C 0.286 3.714
17 O -0.457 6.457
18 C -0.033 4.033
19 N -0.060 5.060
20 N -0.107 5.107
21 N -0.165 5.165
22 C -0.184 4.184
23 C -0.136 4.136
24 C -0.087 4.087
25 C -0.148 4.148
26 C -0.156 4.156
27 C -0.072 4.072
28 C 0.010 3.990
29 H 0.056 0.944
30 H 0.011 0.989
31 H 0.086 0.914
32 H 0.076 0.924
33 H 0.110 0.890
34 H 0.065 0.935
35 H 0.097 0.903
36 H 0.260 0.740
37 H 0.202 0.798
38 H 0.178 0.822
39 H 0.102 0.898
40 H 0.128 0.872
41 H 0.120 0.880
42 H 0.095 0.905
43 H 0.074 0.926
44 H 0.118 0.882
45 H 0.094 0.906
46 H 0.112 0.888
47 H 0.035 0.965
48 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 2.995 -28.269 -4.626 28.801
hybrid contribution -0.122 1.466 -0.404 1.526
sum 2.873 -26.803 -5.030 27.422
Atomic orbital electron populations
1.70058 1.06123 1.24885 1.58782 1.25622 0.96670 1.00962 1.02953
0.85012 0.78103 0.79525 0.76711 1.19183 1.21773 1.22088 1.19468
0.90975 0.83887 1.42168 0.90261 1.44891 1.02864 1.01030 1.86823
1.21735 0.84089 0.94907 0.96755 1.22850 0.98064 0.95571 0.99803
1.22281 0.95428 0.92998 1.00231 0.87542 1.21218 0.90851 0.90625
0.95189 1.45751 1.40991 1.24960 1.23701 1.20865 0.83100 0.81970
0.85478 1.90807 1.60272 1.72026 1.22551 1.22289 1.01291 0.86388
0.93360 1.46550 1.23340 1.11092 1.25027 1.78514 1.12146 1.17108
1.02930 1.74716 1.21238 0.98331 1.22239 1.22354 0.97633 1.00572
0.97823 1.22476 1.01899 0.85760 1.03513 1.20476 0.92547 0.97738
0.97962 1.21611 1.04450 0.92091 0.96647 1.21665 0.94759 1.03107
0.96079 1.20117 0.98749 0.86573 1.01793 1.21602 0.94853 0.84603
0.97962 0.94379 0.98854 0.91390 0.92419 0.88995 0.93530 0.90303
0.74013 0.79754 0.82208 0.89755 0.87169 0.88049 0.90468 0.92552
0.88224 0.90591 0.88773 0.96528 0.94651
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.06 10.09 21.65 0.22 -55.84 16
2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16
3 Si 0.98 45.47 29.55 68.60 2.03 47.50 16
4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
5 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16
6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
7 C -0.24 -13.03 10.28 84.03 0.86 -12.17 16
8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16
9 N -0.63 -31.28 3.40 -691.31 -2.35 -33.63 16
10 C 0.15 7.08 5.89 86.85 0.51 7.59 16
11 C -0.12 -4.17 6.53 31.98 0.21 -3.96 16
12 C -0.09 -2.48 2.96 -9.60 -0.03 -2.51 16
13 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16
14 C 0.15 3.50 5.02 86.38 0.43 3.93 16
15 N -0.70 -12.37 5.47 -463.05 -2.53 -14.90 16
16 C 0.50 10.48 7.90 87.66 0.69 11.18 16
17 O -0.58 -18.83 16.43 -3.05 -0.05 -18.88 16
18 C 0.09 1.18 6.72 85.63 0.58 1.76 16
19 N -0.27 -6.04 2.82 -338.77 -0.95 -6.99 16
20 N -0.13 -4.02 13.19 37.02 0.49 -3.53 16
21 N -0.30 -9.51 12.40 -48.99 -0.61 -10.12 16
22 C -0.04 -1.03 7.11 41.75 0.30 -0.73 16
23 C 0.00 -0.04 6.76 41.50 0.28 0.24 16
24 C -0.05 -0.48 5.97 29.94 0.18 -0.30 16
25 C -0.11 -0.72 5.90 30.77 0.18 -0.54 16
26 C -0.12 -1.12 5.90 30.77 0.18 -0.94 16
27 C -0.03 -0.51 6.30 29.96 0.19 -0.32 16
28 C 0.13 4.95 6.77 86.68 0.59 5.54 16
29 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16
30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16
31 H 0.07 3.76 5.86 -2.39 -0.01 3.75 16
32 H 0.06 2.01 8.05 -2.38 -0.02 1.99 16
33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16
34 H 0.05 1.40 7.93 -2.39 -0.02 1.38 16
35 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16
36 H 0.42 4.57 8.47 -92.71 -0.79 3.79 16
37 H 0.19 0.39 7.71 -2.38 -0.02 0.38 16
38 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16
39 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16
40 H 0.11 0.44 7.87 -2.39 -0.02 0.42 16
41 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16
42 H 0.08 0.44 8.12 -2.38 -0.02 0.42 16
43 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16
44 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16
45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
46 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16
47 H 0.02 0.64 7.68 -2.38 -0.02 0.62 16
48 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16
Total: -1.00 -86.00 385.68 2.04 -83.96
By element:
Atomic # 1 Polarization: 6.95 SS G_CDS: 0.18 Total: 7.13 kcal
Atomic # 6 Polarization: -0.31 SS G_CDS: 5.62 Total: 5.31 kcal
Atomic # 7 Polarization: -119.28 SS G_CDS: -5.74 Total: -125.02 kcal
Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal
Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal
Total: -86.00 2.04 -83.96 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001663620952.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.392 kcal
(2) G-P(sol) polarization free energy of solvation -85.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds