Wall clock time and date at job start Tue Mar 31 2020 18:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48501 * 109.46958 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.47390 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47395 * 119.99783 * 3 2 1 7 7 C 1.38808 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 170.02541 * 7 2 1 9 9 N 1.36933 * 120.00450 * 350.30571 * 7 2 1 10 10 C 1.46956 * 120.59879 * 147.74414 * 9 7 2 11 11 C 1.53814 * 108.39852 * 124.76010 * 10 9 7 12 12 N 1.46967 * 108.57611 * 49.64032 * 11 10 9 13 13 C 1.34779 * 120.59053 * 124.62910 * 12 11 10 14 14 O 1.21606 * 119.99608 * 185.18915 * 13 12 11 15 15 N 1.34773 * 120.00327 * 5.18398 * 13 12 11 16 16 C 1.40848 * 119.99834 * 174.88787 * 15 13 12 17 17 C 1.40232 * 126.07781 * 359.69491 * 16 15 13 18 18 N 1.30837 * 108.34338 * 179.85032 * 17 16 15 19 19 N 1.40070 * 108.35952 * 0.40684 * 18 17 16 20 20 C 1.46505 * 126.05797 * 179.71463 * 19 18 17 21 21 C 1.54262 * 110.03838 * 212.93419 * 20 19 18 22 22 C 1.54963 * 104.16225 * 217.14286 * 21 20 19 23 23 C 1.54890 * 102.77901 * 37.88212 * 22 21 20 24 24 C 1.53875 * 110.02948 * 95.71314 * 20 19 18 25 25 C 1.35729 * 126.07133 * 180.02562 * 16 15 13 26 26 C 1.46959 * 118.81317 * 304.64524 * 12 11 10 27 27 C 1.46967 * 120.58962 * 328.03053 * 9 7 2 28 28 H 0.97002 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.60934 * 244.54289 * 10 9 7 30 30 H 1.08996 * 109.61164 * 5.05092 * 10 9 7 31 31 H 1.08996 * 109.74074 * 289.84594 * 11 10 9 32 32 H 1.09005 * 109.67100 * 169.38771 * 11 10 9 33 33 H 0.97001 * 119.99913 * 354.89836 * 15 13 12 34 34 H 1.08004 * 125.82569 * 0.02562 * 17 16 15 35 35 H 1.09006 * 110.01469 * 334.32877 * 20 19 18 36 36 H 1.09005 * 110.48212 * 335.78716 * 21 20 19 37 37 H 1.09000 * 110.48954 * 98.42471 * 21 20 19 38 38 H 1.09001 * 110.71468 * 279.56902 * 22 21 20 39 39 H 1.08994 * 110.92622 * 156.29652 * 22 21 20 40 40 H 1.09000 * 110.48406 * 203.41148 * 23 22 21 41 41 H 1.08995 * 110.59634 * 80.82065 * 23 22 21 42 42 H 1.09000 * 110.03641 * 238.57196 * 24 20 19 43 43 H 1.09000 * 110.03547 * 0.02562 * 24 20 19 44 44 H 1.08000 * 126.22020 * 359.94759 * 25 16 15 45 45 H 1.09005 * 109.60666 * 295.48745 * 26 12 11 46 46 H 1.08990 * 109.61019 * 174.97697 * 26 12 11 47 47 H 1.09005 * 109.61190 * 354.94258 * 27 9 7 48 48 H 1.08995 * 109.61590 * 115.28452 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0780 -1.2093 -0.1615 9 7 1.3403 -2.3795 0.2007 10 6 1.7957 -3.6185 -0.4452 11 6 2.0189 -4.6805 0.6449 12 7 0.8278 -4.7264 1.5046 13 6 0.1679 -5.8851 1.7010 14 8 -0.8688 -5.8941 2.3366 15 7 0.6568 -7.0336 1.1928 16 6 0.0271 -8.2585 1.4877 17 6 -1.1058 -8.4311 2.2959 18 7 -1.3963 -9.7063 2.3309 19 7 -0.4550 -10.3947 1.5548 20 6 -0.4133 -11.8422 1.3329 21 6 1.0486 -12.3126 1.1869 22 6 0.9846 -13.4187 0.1035 23 6 -0.0679 -12.8654 -0.8891 24 6 -1.1232 -12.1939 0.0138 25 6 0.4129 -9.4823 1.0453 26 6 0.3690 -3.4864 2.1460 27 6 0.1492 -2.4254 1.0605 28 1 -0.4850 0.8401 -0.0004 29 1 1.0375 -3.9649 -1.1475 30 1 2.7305 -3.4330 -0.9742 31 1 2.8915 -4.4171 1.2424 32 1 2.1734 -5.6550 0.1815 33 1 1.4425 -7.0167 0.6242 34 1 -1.6479 -7.6451 2.8008 35 1 -0.8912 -12.3610 2.1640 36 1 1.6826 -11.4903 0.8553 37 1 1.4139 -12.7211 2.1292 38 1 0.6502 -14.3621 0.5350 39 1 1.9507 -13.5405 -0.3861 40 1 -0.5166 -13.6775 -1.4612 41 1 0.3837 -12.1328 -1.5580 42 1 -1.9451 -12.8840 0.2045 43 1 -1.4984 -11.2875 -0.4615 44 1 1.2561 -9.6924 0.4039 45 1 1.1243 -3.1379 2.8505 46 1 -0.5676 -3.6713 2.6718 47 1 -0.0036 -1.4518 1.5262 48 1 -0.7239 -2.6859 0.4624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664719138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:31 Heat of formation + Delta-G solvation = 89.868315 kcal Electronic energy + Delta-G solvation = -28704.533915 eV Core-core repulsion = 24797.414488 eV Total energy + Delta-G solvation = -3907.119427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42064 -39.84836 -38.26099 -36.88279 -34.55459 -33.86199 -31.97724 -31.17545 -30.35014 -29.44836 -29.01082 -27.44161 -26.55032 -23.76934 -22.94155 -22.36045 -21.81025 -21.13285 -20.22169 -20.05836 -18.87581 -18.00345 -17.52627 -16.36649 -16.28823 -16.00618 -15.38015 -14.91023 -14.76483 -14.49748 -14.42799 -14.06886 -13.84615 -13.73604 -13.52294 -13.40116 -13.24530 -12.77226 -12.65245 -12.33052 -12.02221 -11.78614 -11.64326 -11.62523 -11.27622 -11.14115 -11.07724 -10.86534 -10.75290 -10.70550 -10.61520 -10.53734 -10.21230 -10.01008 -9.87148 -9.58398 -9.31845 -8.58666 -8.31250 -7.53125 -6.65221 -5.83617 -3.35737 1.81303 2.30445 2.82616 2.98497 3.34547 3.40528 3.41070 3.68849 3.93648 4.06933 4.14653 4.39295 4.42939 4.68162 4.81691 4.83679 4.92813 4.97026 5.08805 5.17062 5.20228 5.32154 5.34475 5.40706 5.54456 5.58696 5.59991 5.70114 5.72768 5.74314 5.77830 5.81117 5.83081 6.11813 6.32320 6.33193 6.41776 6.52534 6.69631 6.84404 6.93972 7.07935 7.23570 7.32292 7.63316 7.71651 7.77110 8.22858 8.39783 8.87401 9.13666 9.73939 10.32464 11.22926 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028867 B = 0.002174 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.733975 B =12874.747602 C =13370.544995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.094 3.906 12 N -0.610 5.610 13 C 0.707 3.293 14 O -0.588 6.588 15 N -0.665 5.665 16 C 0.036 3.964 17 C 0.053 3.947 18 N -0.290 5.290 19 N -0.369 5.369 20 C 0.166 3.834 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.138 4.138 25 C 0.002 3.998 26 C 0.104 3.896 27 C 0.157 3.843 28 H 0.257 0.743 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.207 0.793 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.171 0.829 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -25.515 0.078 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.004 3.996 11 C -0.031 4.031 12 N -0.346 5.346 13 C 0.409 3.591 14 O -0.467 6.467 15 N -0.315 5.315 16 C -0.070 4.070 17 C -0.135 4.135 18 N -0.111 5.111 19 N -0.155 5.155 20 C 0.064 3.936 21 C -0.175 4.175 22 C -0.160 4.160 23 C -0.163 4.163 24 C -0.177 4.177 25 C -0.145 4.145 26 C -0.020 4.020 27 C 0.031 3.969 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.241 0.759 34 H 0.223 0.777 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.188 0.812 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.120 0.880 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.208 -26.258 0.980 26.369 hybrid contribution 1.476 1.560 -0.816 2.298 sum 3.684 -24.698 0.164 24.971 Atomic orbital electron populations 1.69937 1.05309 1.25861 1.53527 1.25228 0.95445 0.98556 1.00092 0.86303 0.78804 0.83057 0.78125 1.20847 1.21560 1.20878 1.19123 0.90669 0.83645 1.45382 0.91696 1.43939 1.31537 1.03916 1.51957 1.21357 0.98488 0.87603 0.92163 1.22365 0.87567 0.99303 0.93871 1.47255 1.29644 1.07286 1.50405 1.15734 0.83245 0.80046 0.80059 1.90747 1.23793 1.85113 1.47049 1.42128 1.32553 1.03179 1.53662 1.17520 0.98876 0.84906 1.05669 1.24547 0.96163 0.93728 0.99032 1.77360 1.12926 1.05727 1.15063 1.48451 1.22095 1.05860 1.39137 1.21878 0.97339 0.75425 0.98997 1.22835 0.94701 0.99495 1.00424 1.22485 0.99678 0.97863 0.95982 1.22376 0.96164 1.00115 0.97605 1.22645 0.98588 1.01756 0.94707 1.21552 0.99663 0.88080 1.05246 1.22459 0.99598 0.83026 0.96869 1.21252 0.88366 0.97239 0.90029 0.93313 0.95881 0.91517 0.91442 0.92151 0.75933 0.77683 0.87940 0.90109 0.90303 0.90934 0.90751 0.91097 0.91241 0.90429 0.90576 0.81235 0.92293 0.89883 0.87979 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.00 55.49 0.61 -25.01 16 2 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16 3 Si 0.91 21.07 29.57 -169.99 -5.03 16.04 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.78 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 9 N -0.59 -14.22 2.95 -171.77 -0.51 -14.72 16 10 C 0.13 2.54 6.70 -3.37 -0.02 2.52 16 11 C 0.09 1.48 6.58 -3.36 -0.02 1.45 16 12 N -0.61 -11.02 2.95 -177.94 -0.52 -11.54 16 13 C 0.71 12.72 8.26 -86.92 -0.72 12.00 16 14 O -0.59 -12.16 12.94 5.27 0.07 -12.09 16 15 N -0.67 -9.50 5.39 -14.39 -0.08 -9.58 16 16 C 0.04 0.51 6.90 -83.86 -0.58 -0.07 16 17 C 0.05 0.85 10.84 -17.23 -0.19 0.66 16 18 N -0.29 -4.34 12.57 30.70 0.39 -3.95 16 19 N -0.37 -4.30 3.47 -53.44 -0.19 -4.49 16 20 C 0.17 1.35 4.01 -66.81 -0.27 1.08 16 21 C -0.14 -0.79 6.38 -25.03 -0.16 -0.95 16 22 C -0.12 -0.54 6.91 -24.70 -0.17 -0.71 16 23 C -0.12 -0.66 6.83 -25.07 -0.17 -0.83 16 24 C -0.14 -0.99 6.60 -25.61 -0.17 -1.16 16 25 C 0.00 0.02 10.48 -16.67 -0.17 -0.16 16 26 C 0.10 2.09 6.60 -3.60 -0.02 2.06 16 27 C 0.16 3.73 5.45 -3.59 -0.02 3.71 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.72 5.61 -51.93 -0.29 0.42 16 33 H 0.40 4.57 6.30 -40.82 -0.26 4.31 16 34 H 0.21 3.60 5.93 -52.48 -0.31 3.29 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.48 5.98 -51.93 -0.31 0.17 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 44 H 0.17 1.30 6.94 -52.49 -0.36 0.94 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.67 6.99 -51.93 -0.36 1.31 16 47 H 0.10 2.67 6.02 -51.93 -0.31 2.36 16 48 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -32.27 374.66 -9.76 -42.03 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.23 Total: 4.91 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -2.92 Total: 12.76 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -0.30 Total: -69.30 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.27 -9.76 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664719138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.894 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds