Wall clock time and date at job start Tue Mar 31 2020 18:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48501 * 109.46958 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.47390 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47395 * 119.99783 * 3 2 1 7 7 C 1.38808 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 170.02541 * 7 2 1 9 9 N 1.36933 * 120.00450 * 350.30571 * 7 2 1 10 10 C 1.46956 * 120.59879 * 147.74414 * 9 7 2 11 11 C 1.53814 * 108.39852 * 124.76010 * 10 9 7 12 12 N 1.46967 * 108.57611 * 49.64032 * 11 10 9 13 13 C 1.34779 * 120.59053 * 124.62910 * 12 11 10 14 14 O 1.21606 * 119.99608 * 185.18915 * 13 12 11 15 15 N 1.34773 * 120.00327 * 5.18398 * 13 12 11 16 16 C 1.40848 * 119.99834 * 174.88787 * 15 13 12 17 17 C 1.40232 * 126.07781 * 359.69491 * 16 15 13 18 18 N 1.30837 * 108.34338 * 179.85032 * 17 16 15 19 19 N 1.40070 * 108.35952 * 0.40684 * 18 17 16 20 20 C 1.46505 * 126.05797 * 179.71463 * 19 18 17 21 21 C 1.54262 * 110.03838 * 212.93419 * 20 19 18 22 22 C 1.54963 * 104.16225 * 217.14286 * 21 20 19 23 23 C 1.54890 * 102.77901 * 37.88212 * 22 21 20 24 24 C 1.53875 * 110.02948 * 95.71314 * 20 19 18 25 25 C 1.35729 * 126.07133 * 180.02562 * 16 15 13 26 26 C 1.46959 * 118.81317 * 304.64524 * 12 11 10 27 27 C 1.46967 * 120.58962 * 328.03053 * 9 7 2 28 28 H 0.97002 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.60934 * 244.54289 * 10 9 7 30 30 H 1.08996 * 109.61164 * 5.05092 * 10 9 7 31 31 H 1.08996 * 109.74074 * 289.84594 * 11 10 9 32 32 H 1.09005 * 109.67100 * 169.38771 * 11 10 9 33 33 H 0.97001 * 119.99913 * 354.89836 * 15 13 12 34 34 H 1.08004 * 125.82569 * 0.02562 * 17 16 15 35 35 H 1.09006 * 110.01469 * 334.32877 * 20 19 18 36 36 H 1.09005 * 110.48212 * 335.78716 * 21 20 19 37 37 H 1.09000 * 110.48954 * 98.42471 * 21 20 19 38 38 H 1.09001 * 110.71468 * 279.56902 * 22 21 20 39 39 H 1.08994 * 110.92622 * 156.29652 * 22 21 20 40 40 H 1.09000 * 110.48406 * 203.41148 * 23 22 21 41 41 H 1.08995 * 110.59634 * 80.82065 * 23 22 21 42 42 H 1.09000 * 110.03641 * 238.57196 * 24 20 19 43 43 H 1.09000 * 110.03547 * 0.02562 * 24 20 19 44 44 H 1.08000 * 126.22020 * 359.94759 * 25 16 15 45 45 H 1.09005 * 109.60666 * 295.48745 * 26 12 11 46 46 H 1.08990 * 109.61019 * 174.97697 * 26 12 11 47 47 H 1.09005 * 109.61190 * 354.94258 * 27 9 7 48 48 H 1.08995 * 109.61590 * 115.28452 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0780 -1.2093 -0.1615 9 7 1.3403 -2.3795 0.2007 10 6 1.7957 -3.6185 -0.4452 11 6 2.0189 -4.6805 0.6449 12 7 0.8278 -4.7264 1.5046 13 6 0.1679 -5.8851 1.7010 14 8 -0.8688 -5.8941 2.3366 15 7 0.6568 -7.0336 1.1928 16 6 0.0271 -8.2585 1.4877 17 6 -1.1058 -8.4311 2.2959 18 7 -1.3963 -9.7063 2.3309 19 7 -0.4550 -10.3947 1.5548 20 6 -0.4133 -11.8422 1.3329 21 6 1.0486 -12.3126 1.1869 22 6 0.9846 -13.4187 0.1035 23 6 -0.0679 -12.8654 -0.8891 24 6 -1.1232 -12.1939 0.0138 25 6 0.4129 -9.4823 1.0453 26 6 0.3690 -3.4864 2.1460 27 6 0.1492 -2.4254 1.0605 28 1 -0.4850 0.8401 -0.0004 29 1 1.0375 -3.9649 -1.1475 30 1 2.7305 -3.4330 -0.9742 31 1 2.8915 -4.4171 1.2424 32 1 2.1734 -5.6550 0.1815 33 1 1.4425 -7.0167 0.6242 34 1 -1.6479 -7.6451 2.8008 35 1 -0.8912 -12.3610 2.1640 36 1 1.6826 -11.4903 0.8553 37 1 1.4139 -12.7211 2.1292 38 1 0.6502 -14.3621 0.5350 39 1 1.9507 -13.5405 -0.3861 40 1 -0.5166 -13.6775 -1.4612 41 1 0.3837 -12.1328 -1.5580 42 1 -1.9451 -12.8840 0.2045 43 1 -1.4984 -11.2875 -0.4615 44 1 1.2561 -9.6924 0.4039 45 1 1.1243 -3.1379 2.8505 46 1 -0.5676 -3.6713 2.6718 47 1 -0.0036 -1.4518 1.5262 48 1 -0.7239 -2.6859 0.4624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664719138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:30 Heat of formation + Delta-G solvation = 69.947823 kcal Electronic energy + Delta-G solvation = -28705.397732 eV Core-core repulsion = 24797.414488 eV Total energy + Delta-G solvation = -3907.983245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46458 -41.17267 -38.96679 -38.40744 -35.88550 -35.50682 -33.10532 -32.76421 -31.91788 -30.37381 -29.65621 -28.70750 -27.79848 -25.51169 -24.50069 -23.29896 -23.08650 -21.98084 -21.31379 -20.95811 -20.21226 -19.32997 -18.59629 -18.07166 -17.11681 -16.93645 -16.77387 -16.56466 -15.95457 -15.58725 -15.49886 -15.44492 -15.20889 -15.01565 -14.90518 -14.67926 -14.40075 -14.15769 -13.72881 -13.40025 -13.00490 -12.95022 -12.79273 -12.64616 -12.46652 -12.29737 -12.08956 -12.01801 -11.99165 -11.92316 -11.85323 -11.72611 -11.65819 -11.63487 -11.46388 -11.06365 -10.58309 -10.31252 -9.85197 -8.71122 -8.50520 -7.84353 -5.40251 0.82869 1.34130 1.50397 1.52338 1.58944 1.60660 1.75597 2.37314 2.52221 2.90859 3.31231 3.40172 3.58220 3.62874 3.84806 3.90764 4.04070 4.23519 4.26339 4.29352 4.31623 4.40420 4.45384 4.49375 4.51890 4.60303 4.67719 4.70718 4.76461 4.84670 4.88260 4.89101 5.03948 5.09322 5.13729 5.18681 5.23109 5.27100 5.27636 5.44096 5.51861 5.64153 5.69696 5.84149 5.98410 6.16032 6.40569 6.68589 6.96583 7.13301 7.52418 7.81131 8.36017 9.19571 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028867 B = 0.002174 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.733975 B =12874.747602 C =13370.544995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.052 4.052 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.261 4.261 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.126 3.874 11 C 0.104 3.896 12 N -0.615 5.615 13 C 0.703 3.297 14 O -0.622 6.622 15 N -0.645 5.645 16 C 0.003 3.997 17 C 0.028 3.972 18 N -0.317 5.317 19 N -0.359 5.359 20 C 0.153 3.847 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.136 4.136 25 C 0.035 3.965 26 C 0.121 3.879 27 C 0.170 3.830 28 H 0.250 0.750 29 H 0.012 0.988 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.420 0.580 34 H 0.180 0.820 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.216 0.784 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.072 0.928 48 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -28.426 -0.984 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.801 3.199 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.391 4.391 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.000 4.000 11 C -0.020 4.020 12 N -0.350 5.350 13 C 0.405 3.595 14 O -0.503 6.503 15 N -0.296 5.296 16 C -0.102 4.102 17 C -0.158 4.158 18 N -0.139 5.139 19 N -0.144 5.144 20 C 0.052 3.948 21 C -0.169 4.169 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.174 4.174 25 C -0.113 4.113 26 C -0.003 4.003 27 C 0.043 3.957 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.260 0.740 34 H 0.197 0.803 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.232 0.768 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 5.462 -29.250 -0.104 29.756 hybrid contribution 0.445 2.263 -0.539 2.368 sum 5.908 -26.987 -0.643 27.633 Atomic orbital electron populations 1.70127 1.06891 1.25984 1.55509 1.26014 0.96121 1.01871 1.00686 0.85269 0.77369 0.78845 0.78466 1.19905 1.22598 1.20080 1.19530 0.91324 0.84542 1.43744 0.90613 1.44194 1.31215 1.05097 1.52738 1.21568 0.98605 0.86614 0.93207 1.22384 0.86739 1.00367 0.92530 1.47203 1.30403 1.06600 1.50838 1.15870 0.82848 0.80773 0.80051 1.90747 1.25349 1.85699 1.48514 1.41767 1.32692 1.02059 1.53130 1.17663 0.99442 0.85761 1.07343 1.24260 0.97387 0.93807 1.00314 1.77301 1.14438 1.05581 1.16607 1.48880 1.20893 1.07209 1.37433 1.22324 0.99614 0.73303 0.99515 1.22860 0.92538 1.00110 1.01430 1.22476 1.00070 0.97535 0.95135 1.22372 0.95746 1.00289 0.97462 1.22614 0.99427 1.01045 0.94358 1.22155 0.99363 0.86525 1.03280 1.22025 0.99710 0.83102 0.95508 1.20918 0.87536 0.96881 0.90378 0.94095 0.96983 0.89866 0.90185 0.87492 0.73983 0.80283 0.88086 0.89541 0.89628 0.90138 0.89299 0.90148 0.91125 0.89909 0.92839 0.76789 0.91439 0.90653 0.90995 0.99309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.31 11.00 21.65 0.24 -55.07 16 2 C -0.05 -2.81 5.07 84.86 0.43 -2.38 16 3 Si 0.97 43.69 29.57 68.60 2.03 45.72 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.26 -13.66 9.58 84.03 0.80 -12.86 16 8 H 0.08 3.73 7.85 -2.91 -0.02 3.71 16 9 N -0.61 -29.43 2.95 -697.36 -2.06 -31.49 16 10 C 0.13 4.70 6.70 86.57 0.58 5.28 16 11 C 0.10 2.95 6.58 86.56 0.57 3.52 16 12 N -0.61 -21.67 2.95 -835.13 -2.46 -24.13 16 13 C 0.70 24.96 8.26 179.05 1.48 26.44 16 14 O -0.62 -26.59 12.94 -4.05 -0.05 -26.64 16 15 N -0.64 -17.13 5.39 -317.70 -1.71 -18.84 16 16 C 0.00 0.08 6.90 37.59 0.26 0.34 16 17 C 0.03 0.93 10.84 85.33 0.92 1.86 16 18 N -0.32 -9.55 12.57 -56.78 -0.71 -10.26 16 19 N -0.36 -7.73 3.47 -322.98 -1.12 -8.85 16 20 C 0.15 2.13 4.01 45.71 0.18 2.32 16 21 C -0.13 -1.03 6.38 31.69 0.20 -0.83 16 22 C -0.11 -0.55 6.91 31.91 0.22 -0.33 16 23 C -0.12 -0.87 6.83 31.67 0.22 -0.66 16 24 C -0.14 -1.66 6.60 31.32 0.21 -1.46 16 25 C 0.04 0.68 10.48 83.49 0.88 1.56 16 26 C 0.12 4.96 6.60 86.42 0.57 5.53 16 27 C 0.17 8.38 5.45 86.42 0.47 8.85 16 28 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.11 2.04 5.61 -2.38 -0.01 2.03 16 33 H 0.42 7.87 6.30 -92.71 -0.58 7.29 16 34 H 0.18 6.79 5.93 -2.91 -0.02 6.78 16 35 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.09 0.60 5.98 -2.38 -0.01 0.59 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.91 7.92 -2.39 -0.02 0.90 16 44 H 0.22 2.11 6.94 -2.91 -0.02 2.09 16 45 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 46 H 0.08 3.18 6.99 -2.39 -0.02 3.16 16 47 H 0.07 3.98 6.02 -2.38 -0.01 3.96 16 48 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -74.44 374.66 2.54 -71.90 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.40 Total: 20.48 kcal Atomic # 6 Polarization: 29.18 SS G_CDS: 7.99 Total: 37.18 kcal Atomic # 7 Polarization: -140.81 SS G_CDS: -7.83 Total: -148.64 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.44 2.54 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664719138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.846 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds