Wall clock time and date at job start Tue Mar 31 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48497 * 109.47552 * 269.99790 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.47228 * 149.99632 * 3 2 1 7 7 C 1.38814 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99835 * 197.01687 * 7 2 1 9 9 N 1.36937 * 119.99721 * 17.02107 * 7 2 1 10 10 C 1.47081 * 120.88076 * 206.58456 * 9 7 2 11 11 C 1.53236 * 108.52200 * 231.16471 * 10 9 7 12 12 N 1.46897 * 109.33836 * 306.16973 * 11 10 9 13 13 C 1.46907 * 111.00065 * 187.25393 * 12 11 10 14 14 C 1.52997 * 109.47030 * 170.00112 * 13 12 11 15 15 N 1.46506 * 109.47028 * 180.02562 * 14 13 12 16 16 C 1.34770 * 119.99905 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99627 * 180.02562 * 16 15 14 19 19 H 1.08994 * 115.55174 * 34.28127 * 18 16 15 20 20 C 1.53005 * 117.49688 * 248.60620 * 18 16 15 21 21 C 1.52999 * 60.00230 * 252.51519 * 20 18 16 22 22 H 1.08994 * 117.49973 * 107.49515 * 21 20 18 23 23 C 1.50704 * 117.49601 * 252.51482 * 21 20 18 24 24 C 1.34665 * 126.59315 * 33.30696 * 23 21 20 25 25 N 1.34134 * 108.02067 * 179.87269 * 24 23 21 26 26 C 1.30498 * 109.25442 * 0.40175 * 25 24 23 27 27 N 1.35044 * 108.70037 * 359.75252 * 26 25 24 28 28 H 0.97004 * 126.40104 * 180.02562 * 27 26 25 29 29 C 1.46903 * 111.27302 * 63.10615 * 12 11 10 30 30 C 1.47078 * 120.88151 * 26.56535 * 9 7 2 31 31 H 0.97006 * 119.99903 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.62341 * 111.45213 * 10 9 7 33 33 H 1.09004 * 109.78585 * 350.96965 * 10 9 7 34 34 H 1.08999 * 109.49258 * 186.21585 * 11 10 9 35 35 H 1.09001 * 109.49452 * 66.12605 * 11 10 9 36 36 H 1.08994 * 109.46605 * 49.99989 * 13 12 11 37 37 H 1.08995 * 109.46912 * 289.99835 * 13 12 11 38 38 H 1.09004 * 109.47732 * 59.99905 * 14 13 12 39 39 H 1.09005 * 109.47027 * 299.99840 * 14 13 12 40 40 H 0.96999 * 119.99817 * 359.97438 * 15 14 13 41 41 H 1.09004 * 117.49887 * 0.02562 * 20 18 16 42 42 H 1.08999 * 117.49401 * 144.99615 * 20 18 16 43 43 H 1.08005 * 125.99145 * 0.02920 * 24 23 21 44 44 H 1.07997 * 125.64977 * 179.72974 * 26 25 24 45 45 H 1.08998 * 109.49071 * 56.85168 * 29 12 11 46 46 H 1.09001 * 109.49886 * 176.93548 * 29 12 11 47 47 H 1.09001 * 109.62561 * 248.54809 * 30 9 7 48 48 H 1.09005 * 109.63102 * 9.12216 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3461 10 6 1.8310 -3.6609 0.1685 11 6 2.0025 -4.6200 -1.0142 12 7 0.7549 -4.6656 -1.7885 13 6 0.8185 -5.7007 -2.8290 14 6 -0.5690 -5.8904 -3.4450 15 7 -0.5057 -6.9232 -4.4822 16 6 -1.6173 -7.2612 -5.1653 17 8 -2.6699 -6.7101 -4.9216 18 6 -1.5522 -8.3239 -6.2318 19 1 -0.8530 -9.1382 -6.0421 20 6 -1.7431 -7.8803 -7.6836 21 6 -2.8481 -8.6628 -6.9713 22 1 -3.7477 -8.1172 -6.6865 23 6 -3.0603 -10.0973 -7.3817 24 6 -2.1139 -10.9636 -7.7907 25 7 -2.7111 -12.1343 -8.0590 26 6 -3.9928 -12.0238 -7.8400 27 7 -4.2529 -10.7683 -7.4161 28 1 -5.1224 -10.4090 -7.1797 29 6 0.4402 -3.3536 -2.3697 30 6 0.2047 -2.3426 -1.2425 31 1 -0.4850 0.8401 -0.0004 32 1 1.0920 -4.0628 0.8617 33 1 2.7850 -3.5375 0.6812 34 1 2.2364 -5.6176 -0.6425 35 1 2.8138 -4.2695 -1.6522 36 1 1.1515 -6.6398 -2.3872 37 1 1.5212 -5.3943 -3.6038 38 1 -0.9021 -4.9512 -3.8867 39 1 -1.2718 -6.1969 -2.6701 40 1 0.3362 -7.3636 -4.6773 41 1 -1.9152 -6.8198 -7.8674 42 1 -1.1692 -8.4028 -8.4490 43 1 -1.0586 -10.7535 -7.8837 44 1 -4.7244 -12.8065 -7.9757 45 1 1.2733 -3.0208 -2.9887 46 1 -0.4588 -3.4328 -2.9810 47 1 -0.6905 -2.6178 -0.6849 48 1 0.0842 -1.3449 -1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690073293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:44 Heat of formation + Delta-G solvation = 83.578998 kcal Electronic energy + Delta-G solvation = -27506.113874 eV Core-core repulsion = 23598.721722 eV Total energy + Delta-G solvation = -3907.392153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49764 -40.17212 -38.32342 -37.00986 -35.39195 -33.98476 -32.90779 -31.49261 -29.96034 -29.82511 -28.95668 -26.24084 -24.48996 -23.72456 -23.11595 -22.54954 -22.02924 -21.35019 -20.92867 -20.15997 -19.12632 -18.54649 -17.38282 -16.83064 -16.21087 -15.71646 -15.36358 -15.11732 -14.99629 -14.82626 -14.44744 -14.36530 -14.20705 -13.90581 -13.60122 -13.57223 -13.44222 -12.97808 -12.89592 -12.56889 -12.40732 -11.68610 -11.50391 -11.42550 -11.35487 -11.08131 -11.05242 -10.76548 -10.46224 -10.41912 -10.39815 -10.33385 -10.09950 -10.06602 -9.76410 -9.63682 -9.15726 -8.68353 -8.51601 -7.91353 -6.67962 -5.78390 -3.19927 1.47501 2.28097 2.57526 2.71330 2.94994 3.37397 3.44220 3.45593 3.55525 4.07186 4.25323 4.32093 4.38442 4.46419 4.50813 4.66165 4.70975 4.91141 4.95193 5.09126 5.13653 5.24929 5.38724 5.40869 5.43015 5.48915 5.53473 5.79921 5.86393 5.88401 5.92702 6.02981 6.09033 6.18154 6.27213 6.28186 6.31979 6.52072 6.66866 6.91041 6.92218 7.22118 7.29539 7.52072 7.61957 7.62785 7.68085 7.80522 8.03206 8.42856 9.20679 9.84011 10.42425 11.30379 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031787 B = 0.001690 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.643084 B =16565.872168 C =16928.029459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.530 5.530 13 C 0.045 3.955 14 C 0.120 3.880 15 N -0.722 5.722 16 C 0.541 3.459 17 O -0.538 6.538 18 C -0.173 4.173 19 H 0.130 0.870 20 C -0.131 4.131 21 C -0.056 4.056 22 H 0.126 0.874 23 C 0.011 3.989 24 C -0.023 4.023 25 N -0.493 5.493 26 C 0.185 3.815 27 N -0.564 5.564 28 H 0.422 0.578 29 C 0.031 3.969 30 C 0.177 3.823 31 H 0.254 0.746 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.169 0.831 44 H 0.209 0.791 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -21.623 -16.459 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.003 4.003 15 N -0.373 5.373 16 C 0.327 3.673 17 O -0.415 6.415 18 C -0.195 4.195 19 H 0.148 0.852 20 C -0.169 4.169 21 C -0.076 4.076 22 H 0.144 0.856 23 C -0.104 4.104 24 C -0.171 4.171 25 N -0.212 5.212 26 C -0.099 4.099 27 N -0.167 5.167 28 H 0.260 0.740 29 C -0.098 4.098 30 C 0.051 3.949 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.186 0.814 44 H 0.226 0.774 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.560 -21.900 -16.186 27.795 hybrid contribution 0.644 1.639 -0.182 1.770 sum -4.916 -20.261 -16.368 26.507 Atomic orbital electron populations 1.70031 1.05198 1.25498 1.53981 1.25031 0.95312 0.98362 1.01016 0.86281 0.79081 0.83708 0.77636 1.21525 1.21733 1.20470 1.19206 0.92597 0.84786 1.41681 0.91601 1.44122 1.34137 1.01253 1.52345 1.20974 0.97866 0.86491 0.92529 1.22626 0.89253 0.99523 0.96898 1.61877 1.34694 1.05774 1.23145 1.22194 0.94961 0.96967 0.94283 1.21415 0.98203 0.90891 0.89785 1.45860 1.11449 1.41303 1.38728 1.19516 0.83683 0.82577 0.81518 1.90732 1.29537 1.54295 1.66951 1.22400 1.02116 1.01155 0.93809 0.85243 1.23168 0.99964 1.01496 0.92274 1.20130 0.94575 0.90031 1.02885 0.85614 1.20309 0.86263 0.94650 1.09220 1.22046 0.99543 0.89399 1.06147 1.70304 1.04989 1.25021 1.20862 1.25006 0.95125 0.86904 1.02868 1.43213 1.09799 1.11993 1.51664 0.74049 1.23007 0.98804 0.89215 0.98769 1.20872 0.89007 0.96574 0.88403 0.93587 0.95611 0.92535 0.91960 0.95325 0.90844 0.94932 0.90988 0.90398 0.76594 0.87288 0.87001 0.81417 0.77409 0.95581 0.91805 0.95451 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 11.15 55.49 0.62 -25.69 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.96 9.63 -15.06 -0.15 -7.11 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.05 3.04 -172.01 -0.52 -15.57 16 10 C 0.15 3.12 6.69 -3.60 -0.02 3.09 16 11 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -9.07 4.63 -234.32 -1.08 -10.15 16 13 C 0.04 0.58 5.08 -3.82 -0.02 0.56 16 14 C 0.12 1.54 5.60 -4.04 -0.02 1.51 16 15 N -0.72 -7.14 5.56 -60.29 -0.33 -7.48 16 16 C 0.54 6.01 7.61 -10.99 -0.08 5.92 16 17 O -0.54 -8.26 16.26 5.55 0.09 -8.17 16 18 C -0.17 -1.29 5.72 -91.76 -0.52 -1.81 16 19 H 0.13 0.72 7.98 -51.93 -0.41 0.31 16 20 C -0.13 -0.82 9.75 -26.73 -0.26 -1.08 16 21 C -0.06 -0.42 5.84 -91.77 -0.54 -0.96 16 22 H 0.13 1.07 7.67 -51.93 -0.40 0.68 16 23 C 0.01 0.09 6.92 -81.60 -0.56 -0.48 16 24 C -0.02 -0.20 10.94 -17.81 -0.19 -0.40 16 25 N -0.49 -4.83 11.25 -14.66 -0.16 -4.99 16 26 C 0.18 1.23 13.04 -90.38 -1.18 0.05 16 27 N -0.56 -3.38 6.15 -10.30 -0.06 -3.44 16 28 H 0.42 1.34 8.96 -40.82 -0.37 0.98 16 29 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 30 C 0.18 4.29 5.42 -3.60 -0.02 4.27 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 34 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 37 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.07 1.05 6.40 -51.93 -0.33 0.71 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.11 0.51 7.94 -51.93 -0.41 0.10 16 43 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 2.38 6.12 -51.93 -0.32 2.07 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -35.31 390.12 -11.81 -47.12 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.50 Total: 0.95 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.70 Total: 4.89 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.55 Total: -67.32 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.31 -11.81 -47.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690073293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.703 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds