Wall clock time and date at job start Tue Mar 31 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48497 * 109.47552 * 269.99790 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.47228 * 149.99632 * 3 2 1 7 7 C 1.38814 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99835 * 197.01687 * 7 2 1 9 9 N 1.36937 * 119.99721 * 17.02107 * 7 2 1 10 10 C 1.47081 * 120.88076 * 206.58456 * 9 7 2 11 11 C 1.53236 * 108.52200 * 231.16471 * 10 9 7 12 12 N 1.46897 * 109.33836 * 306.16973 * 11 10 9 13 13 C 1.46907 * 111.00065 * 187.25393 * 12 11 10 14 14 C 1.52997 * 109.47030 * 170.00112 * 13 12 11 15 15 N 1.46506 * 109.47028 * 180.02562 * 14 13 12 16 16 C 1.34770 * 119.99905 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99627 * 180.02562 * 16 15 14 19 19 H 1.08994 * 115.55174 * 34.28127 * 18 16 15 20 20 C 1.53005 * 117.49688 * 248.60620 * 18 16 15 21 21 C 1.52999 * 60.00230 * 252.51519 * 20 18 16 22 22 H 1.08994 * 117.49973 * 107.49515 * 21 20 18 23 23 C 1.50704 * 117.49601 * 252.51482 * 21 20 18 24 24 C 1.34665 * 126.59315 * 33.30696 * 23 21 20 25 25 N 1.34134 * 108.02067 * 179.87269 * 24 23 21 26 26 C 1.30498 * 109.25442 * 0.40175 * 25 24 23 27 27 N 1.35044 * 108.70037 * 359.75252 * 26 25 24 28 28 H 0.97004 * 126.40104 * 180.02562 * 27 26 25 29 29 C 1.46903 * 111.27302 * 63.10615 * 12 11 10 30 30 C 1.47078 * 120.88151 * 26.56535 * 9 7 2 31 31 H 0.97006 * 119.99903 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.62341 * 111.45213 * 10 9 7 33 33 H 1.09004 * 109.78585 * 350.96965 * 10 9 7 34 34 H 1.08999 * 109.49258 * 186.21585 * 11 10 9 35 35 H 1.09001 * 109.49452 * 66.12605 * 11 10 9 36 36 H 1.08994 * 109.46605 * 49.99989 * 13 12 11 37 37 H 1.08995 * 109.46912 * 289.99835 * 13 12 11 38 38 H 1.09004 * 109.47732 * 59.99905 * 14 13 12 39 39 H 1.09005 * 109.47027 * 299.99840 * 14 13 12 40 40 H 0.96999 * 119.99817 * 359.97438 * 15 14 13 41 41 H 1.09004 * 117.49887 * 0.02562 * 20 18 16 42 42 H 1.08999 * 117.49401 * 144.99615 * 20 18 16 43 43 H 1.08005 * 125.99145 * 0.02920 * 24 23 21 44 44 H 1.07997 * 125.64977 * 179.72974 * 26 25 24 45 45 H 1.08998 * 109.49071 * 56.85168 * 29 12 11 46 46 H 1.09001 * 109.49886 * 176.93548 * 29 12 11 47 47 H 1.09001 * 109.62561 * 248.54809 * 30 9 7 48 48 H 1.09005 * 109.63102 * 9.12216 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3461 10 6 1.8310 -3.6609 0.1685 11 6 2.0025 -4.6200 -1.0142 12 7 0.7549 -4.6656 -1.7885 13 6 0.8185 -5.7007 -2.8290 14 6 -0.5690 -5.8904 -3.4450 15 7 -0.5057 -6.9232 -4.4822 16 6 -1.6173 -7.2612 -5.1653 17 8 -2.6699 -6.7101 -4.9216 18 6 -1.5522 -8.3239 -6.2318 19 1 -0.8530 -9.1382 -6.0421 20 6 -1.7431 -7.8803 -7.6836 21 6 -2.8481 -8.6628 -6.9713 22 1 -3.7477 -8.1172 -6.6865 23 6 -3.0603 -10.0973 -7.3817 24 6 -2.1139 -10.9636 -7.7907 25 7 -2.7111 -12.1343 -8.0590 26 6 -3.9928 -12.0238 -7.8400 27 7 -4.2529 -10.7683 -7.4161 28 1 -5.1224 -10.4090 -7.1797 29 6 0.4402 -3.3536 -2.3697 30 6 0.2047 -2.3426 -1.2425 31 1 -0.4850 0.8401 -0.0004 32 1 1.0920 -4.0628 0.8617 33 1 2.7850 -3.5375 0.6812 34 1 2.2364 -5.6176 -0.6425 35 1 2.8138 -4.2695 -1.6522 36 1 1.1515 -6.6398 -2.3872 37 1 1.5212 -5.3943 -3.6038 38 1 -0.9021 -4.9512 -3.8867 39 1 -1.2718 -6.1969 -2.6701 40 1 0.3362 -7.3636 -4.6773 41 1 -1.9152 -6.8198 -7.8674 42 1 -1.1692 -8.4028 -8.4490 43 1 -1.0586 -10.7535 -7.8837 44 1 -4.7244 -12.8065 -7.9757 45 1 1.2733 -3.0208 -2.9887 46 1 -0.4588 -3.4328 -2.9810 47 1 -0.6905 -2.6178 -0.6849 48 1 0.0842 -1.3449 -1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690073293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:43 Heat of formation + Delta-G solvation = 58.286502 kcal Electronic energy + Delta-G solvation = -27507.210639 eV Core-core repulsion = 23598.721722 eV Total energy + Delta-G solvation = -3908.488917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.01467 -41.03794 -39.77307 -37.75972 -36.74000 -35.42089 -33.43916 -33.29791 -31.65879 -30.68768 -29.99977 -27.81819 -25.62266 -24.63939 -24.28163 -24.12744 -22.56758 -22.53478 -21.56526 -20.97639 -20.75754 -19.10209 -18.73507 -18.08531 -17.36160 -16.84156 -16.62164 -16.08915 -15.93997 -15.87858 -15.58897 -15.41525 -15.30447 -15.11560 -14.99893 -14.88893 -14.48529 -14.40576 -14.11781 -13.60058 -13.22150 -13.01607 -12.94564 -12.84068 -12.63173 -12.57399 -12.23344 -12.04546 -12.01453 -11.86277 -11.69920 -11.56572 -11.42684 -11.01225 -10.98339 -10.93500 -10.59929 -10.13179 -9.30712 -9.22186 -8.69640 -7.88231 -5.33287 0.95049 1.46332 1.47370 1.47866 1.56656 1.93318 2.17049 2.28555 2.50295 2.95854 3.07383 3.27250 3.57031 3.67093 3.67348 3.82241 3.88435 3.93042 4.06206 4.10885 4.15988 4.29567 4.34512 4.46090 4.46727 4.54749 4.60076 4.64283 4.70493 4.77134 4.82583 4.90061 4.92476 4.99545 5.03933 5.05319 5.20179 5.31831 5.36062 5.38604 5.60622 5.66750 5.75427 6.13381 6.22631 6.36403 6.52527 6.53061 7.11457 7.12186 7.21714 7.83247 8.37417 9.18618 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031787 B = 0.001690 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.643084 B =16565.872168 C =16928.029459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.544 5.544 13 C 0.054 3.946 14 C 0.129 3.871 15 N -0.708 5.708 16 C 0.537 3.463 17 O -0.588 6.588 18 C -0.169 4.169 19 H 0.155 0.845 20 C -0.115 4.115 21 C -0.061 4.061 22 H 0.110 0.890 23 C 0.005 3.995 24 C -0.037 4.037 25 N -0.536 5.536 26 C 0.190 3.810 27 N -0.560 5.560 28 H 0.433 0.567 29 C 0.050 3.950 30 C 0.184 3.816 31 H 0.250 0.750 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.029 0.971 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.419 0.581 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.182 0.818 44 H 0.243 0.757 45 H 0.024 0.976 46 H 0.075 0.925 47 H -0.005 1.005 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -23.724 -17.808 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.074 4.074 14 C 0.005 3.995 15 N -0.360 5.360 16 C 0.325 3.675 17 O -0.468 6.468 18 C -0.190 4.190 19 H 0.172 0.828 20 C -0.153 4.153 21 C -0.081 4.081 22 H 0.128 0.872 23 C -0.112 4.112 24 C -0.185 4.185 25 N -0.256 5.256 26 C -0.094 4.094 27 N -0.164 5.164 28 H 0.273 0.727 29 C -0.079 4.079 30 C 0.058 3.942 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.257 0.743 41 H 0.121 0.879 42 H 0.153 0.847 43 H 0.199 0.801 44 H 0.259 0.741 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.013 0.987 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.847 -24.047 -17.542 30.013 hybrid contribution 0.069 2.214 0.279 2.233 sum -3.778 -21.833 -17.262 28.088 Atomic orbital electron populations 1.70202 1.06752 1.25844 1.55555 1.25826 0.96060 1.01612 1.01359 0.85230 0.78094 0.79372 0.77531 1.21224 1.22270 1.19126 1.19573 0.92977 0.85944 1.40867 0.91192 1.44407 1.34109 1.02302 1.52998 1.21170 0.97558 0.85504 0.94249 1.22468 0.89088 1.00252 0.95255 1.61754 1.35059 1.05276 1.24843 1.22189 0.94999 0.96530 0.93643 1.21122 0.97885 0.90716 0.89809 1.45675 1.12242 1.40428 1.37630 1.20158 0.82983 0.82632 0.81734 1.90715 1.31402 1.56201 1.68503 1.22372 1.02771 1.00640 0.93203 0.82750 1.23253 0.98937 1.01268 0.91799 1.20043 0.94273 0.90180 1.03615 0.87159 1.20309 0.86796 0.94541 1.09530 1.22341 1.00440 0.89320 1.06381 1.70296 1.06575 1.25992 1.22726 1.25694 0.95029 0.87523 1.01127 1.43262 1.10104 1.11847 1.51147 0.72667 1.22606 0.99311 0.89438 0.96543 1.20610 0.87868 0.96372 0.89343 0.94124 0.96779 0.91830 0.88115 0.95246 0.87953 0.93368 0.93128 0.92407 0.74345 0.87861 0.84727 0.80139 0.74097 0.95810 0.90674 0.98672 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 11.15 21.65 0.24 -56.41 16 2 C -0.05 -3.02 4.94 84.86 0.42 -2.61 16 3 Si 0.97 45.22 29.59 68.60 2.03 47.25 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.26 -14.66 9.63 84.03 0.81 -13.85 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -31.52 3.04 -698.12 -2.12 -33.64 16 10 C 0.14 5.83 6.69 86.35 0.58 6.41 16 11 C 0.06 1.86 5.62 86.38 0.49 2.35 16 12 N -0.54 -17.67 4.63 -895.26 -4.14 -21.81 16 13 C 0.05 1.22 5.08 86.30 0.44 1.66 16 14 C 0.13 3.13 5.60 86.38 0.48 3.61 16 15 N -0.71 -12.52 5.56 -463.04 -2.57 -15.09 16 16 C 0.54 11.34 7.61 87.66 0.67 12.01 16 17 O -0.59 -18.29 16.26 -3.05 -0.05 -18.33 16 18 C -0.17 -2.18 5.72 -11.54 -0.07 -2.24 16 19 H 0.15 1.23 7.98 -2.39 -0.02 1.21 16 20 C -0.11 -1.20 9.75 30.60 0.30 -0.90 16 21 C -0.06 -0.85 5.84 -11.54 -0.07 -0.92 16 22 H 0.11 1.90 7.67 -2.39 -0.02 1.88 16 23 C 0.00 0.06 6.92 40.95 0.28 0.35 16 24 C -0.04 -0.58 10.94 83.52 0.91 0.33 16 25 N -0.54 -9.74 11.25 -200.31 -2.25 -11.99 16 26 C 0.19 2.18 13.04 180.26 2.35 4.53 16 27 N -0.56 -5.89 6.15 -186.49 -1.15 -7.04 16 28 H 0.43 2.22 8.96 -92.71 -0.83 1.39 16 29 C 0.05 1.94 5.46 86.38 0.47 2.41 16 30 C 0.18 9.25 5.42 86.35 0.47 9.71 16 31 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 2.49 7.96 -2.38 -0.02 2.47 16 34 H 0.10 2.49 7.99 -2.39 -0.02 2.47 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.80 7.97 -2.39 -0.02 1.78 16 37 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 38 H 0.05 1.46 6.40 -2.39 -0.02 1.44 16 39 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.42 4.25 8.47 -92.71 -0.79 3.47 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.13 0.82 7.94 -2.39 -0.02 0.80 16 43 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.24 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 2.70 6.16 -2.39 -0.01 2.69 16 47 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.06 3.13 6.12 -2.38 -0.01 3.12 16 Total: -1.00 -79.87 390.12 -2.11 -81.98 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.63 Total: 12.24 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 8.53 Total: 22.86 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -12.00 Total: -145.99 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.33 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -79.87 -2.11 -81.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690073293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.268 kcal (2) G-P(sol) polarization free energy of solvation -79.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds