Wall clock time and date at job start Tue Mar 31 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47180 * 239.99575 * 3 2 1 5 5 H 1.48492 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47172 * 119.99584 * 3 2 1 7 7 C 1.38817 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 197.01690 * 7 2 1 9 9 N 1.36931 * 120.00122 * 17.02360 * 7 2 1 10 10 C 1.47074 * 120.88299 * 206.58225 * 9 7 2 11 11 C 1.53243 * 108.52644 * 231.16130 * 10 9 7 12 12 N 1.46895 * 109.33814 * 306.17284 * 11 10 9 13 13 C 1.46897 * 110.99991 * 187.24966 * 12 11 10 14 14 C 1.53000 * 109.47196 * 170.00052 * 13 12 11 15 15 N 1.46508 * 109.47038 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00016 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99946 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00176 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47002 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.46901 * 180.02562 * 19 18 16 21 21 N 1.31800 * 119.12060 * 269.72979 * 20 19 18 22 22 C 1.32337 * 120.81329 * 179.76082 * 21 20 19 23 23 C 1.38599 * 119.10686 * 0.50559 * 22 21 20 24 24 C 1.38596 * 118.40007 * 359.75031 * 23 22 21 25 25 N 1.31794 * 119.12336 * 90.00398 * 20 19 18 26 26 C 1.46900 * 111.27226 * 63.10190 * 12 11 10 27 27 C 1.47083 * 120.87964 * 26.56030 * 9 7 2 28 28 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.62891 * 111.45279 * 10 9 7 30 30 H 1.08997 * 109.79022 * 350.97212 * 10 9 7 31 31 H 1.08996 * 109.49529 * 186.20765 * 11 10 9 32 32 H 1.08997 * 109.49029 * 66.12911 * 11 10 9 33 33 H 1.08997 * 109.47393 * 50.00084 * 13 12 11 34 34 H 1.09000 * 109.47157 * 290.00069 * 13 12 11 35 35 H 1.09004 * 109.47456 * 60.00108 * 14 13 12 36 36 H 1.09001 * 109.47082 * 299.99507 * 14 13 12 37 37 H 0.96996 * 119.99689 * 0.02562 * 15 14 13 38 38 H 1.09002 * 109.46874 * 60.00408 * 18 16 15 39 39 H 1.09000 * 109.47263 * 300.00186 * 18 16 15 40 40 H 1.09001 * 109.47446 * 299.99741 * 19 18 16 41 41 H 1.08996 * 109.47452 * 60.00717 * 19 18 16 42 42 H 1.08003 * 120.44207 * 180.23979 * 22 21 20 43 43 H 1.07999 * 120.79513 * 179.77755 * 23 22 21 44 44 H 1.07998 * 120.44778 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.49647 * 56.85047 * 26 12 11 46 46 H 1.09001 * 109.49382 * 176.93710 * 26 12 11 47 47 H 1.08997 * 109.62931 * 248.54772 * 27 9 7 48 48 H 1.08997 * 109.63274 * 9.13208 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2226 0.2743 9 7 1.3705 -2.3622 -0.3461 10 6 1.8308 -3.6609 0.1684 11 6 2.0023 -4.6201 -1.0143 12 7 0.7548 -4.6656 -1.7886 13 6 0.8183 -5.7006 -2.8290 14 6 -0.5692 -5.8903 -3.4451 15 7 -0.5057 -6.9222 -4.4832 16 6 -1.6171 -7.2601 -5.1665 17 8 -2.6699 -6.7096 -4.9223 18 6 -1.5517 -8.3210 -6.2347 19 6 -2.9395 -8.5117 -6.8498 20 6 -2.8742 -9.5732 -7.9176 21 7 -2.6137 -9.2181 -9.1598 22 6 -2.5438 -10.1229 -10.1230 23 6 -2.7591 -11.4564 -9.8123 24 6 -3.0355 -11.7902 -8.4959 25 7 -3.0844 -10.8311 -7.5853 26 6 0.4401 -3.3536 -2.3697 27 6 0.2046 -2.3425 -1.2425 28 1 -0.4850 0.8400 -0.0004 29 1 1.0919 -4.0628 0.8616 30 1 2.7847 -3.5376 0.6811 31 1 2.2363 -5.6177 -0.6427 32 1 2.8136 -4.2696 -1.6522 33 1 1.1512 -6.6398 -2.3874 34 1 1.5211 -5.3943 -3.6038 35 1 -0.9022 -4.9511 -3.8869 36 1 -1.2720 -6.1968 -2.6703 37 1 0.3362 -7.3627 -4.6782 38 1 -1.2179 -9.2604 -5.7938 39 1 -0.8495 -8.0136 -7.0096 40 1 -3.6414 -8.8194 -6.0747 41 1 -3.2738 -7.5726 -7.2906 42 1 -2.3261 -9.8257 -11.1383 43 1 -2.7122 -12.2170 -10.5776 44 1 -3.2083 -12.8191 -8.2169 45 1 1.2732 -3.0207 -2.9887 46 1 -0.4589 -3.4328 -2.9810 47 1 -0.6906 -2.6177 -0.6849 48 1 0.0842 -1.3449 -1.6648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690079484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:07 Heat of formation + Delta-G solvation = 43.257081 kcal Electronic energy + Delta-G solvation = -27255.187822 eV Core-core repulsion = 23346.047179 eV Total energy + Delta-G solvation = -3909.140642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49384 -39.82055 -38.20532 -35.50813 -34.58297 -34.16458 -33.94311 -31.63973 -31.18434 -29.92709 -28.93956 -26.49875 -25.34020 -25.01457 -23.31673 -22.68999 -22.39676 -21.29456 -20.43207 -19.09497 -18.01317 -17.74252 -16.94755 -16.77346 -16.14888 -15.94708 -15.67393 -15.29948 -14.95982 -14.79608 -14.34791 -14.21498 -14.07840 -13.88112 -13.56287 -13.42496 -13.20271 -13.16242 -12.85637 -12.47056 -12.46466 -11.62205 -11.50041 -11.42384 -11.31611 -11.29170 -11.25251 -11.03400 -10.71623 -10.47022 -10.30174 -10.13969 -10.04259 -9.88256 -9.73097 -9.69406 -9.60529 -9.08079 -8.48540 -7.87698 -6.64906 -5.75659 -3.17039 0.38802 0.61061 2.54014 2.91356 3.29956 3.39950 3.45943 3.46762 3.51929 3.69964 4.10890 4.37655 4.47784 4.52951 4.56004 4.59638 4.74271 4.76850 4.94728 5.06607 5.18249 5.22142 5.23786 5.41719 5.44156 5.53215 5.62707 5.69538 5.83916 5.91800 5.95415 5.98328 6.08758 6.12260 6.22018 6.32990 6.37327 6.52543 6.55270 6.70245 6.93874 7.25494 7.35821 7.55922 7.64064 7.65565 7.71138 7.82966 8.11591 8.45684 9.23379 9.86843 10.45422 11.33140 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.001612 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.176358 B =17361.291823 C =17743.536879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.120 3.880 15 N -0.729 5.729 16 C 0.515 3.485 17 O -0.535 6.535 18 C -0.130 4.130 19 C -0.038 4.038 20 C 0.323 3.677 21 N -0.515 5.515 22 C 0.150 3.850 23 C -0.236 4.236 24 C 0.149 3.851 25 N -0.515 5.515 26 C 0.031 3.969 27 C 0.178 3.822 28 H 0.255 0.745 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.169 0.831 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.028 0.972 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -25.107 -19.626 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.003 4.003 15 N -0.381 5.381 16 C 0.301 3.699 17 O -0.412 6.412 18 C -0.171 4.171 19 C -0.077 4.077 20 C 0.056 3.944 21 N -0.229 5.229 22 C -0.017 4.017 23 C -0.258 4.258 24 C -0.017 4.017 25 N -0.229 5.229 26 C -0.098 4.098 27 C 0.052 3.948 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.186 0.814 43 H 0.166 0.834 44 H 0.186 0.814 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.405 -23.937 -18.382 30.372 hybrid contribution 1.620 -0.002 -1.507 2.213 sum -1.786 -23.939 -19.889 31.174 Atomic orbital electron populations 1.70017 1.05194 1.25621 1.53847 1.25024 0.95299 0.98336 1.01010 0.86366 0.78887 0.83435 0.78048 1.21156 1.21604 1.20901 1.19148 0.92554 0.84822 1.41854 0.91705 1.44109 1.34156 1.01228 1.52354 1.20969 0.97841 0.86509 0.92527 1.22624 0.89284 0.99491 0.96908 1.61871 1.34633 1.05792 1.23171 1.22195 0.95075 0.96894 0.94230 1.21398 0.98057 0.91012 0.89858 1.45959 1.11571 1.41549 1.39049 1.20414 0.83736 0.83491 0.82276 1.90747 1.29325 1.54140 1.66960 1.21530 0.98666 0.99120 0.97813 1.20148 0.97502 0.95733 0.94363 1.23271 0.89557 0.90683 0.90905 1.68330 1.14214 1.38976 1.01392 1.23307 0.90159 0.89093 0.99092 1.22942 1.04295 0.99187 0.99397 1.23300 0.89999 0.99364 0.88999 1.68322 1.14870 1.01456 1.38285 1.23009 0.98835 0.89198 0.98765 1.20872 0.88993 0.96571 0.88397 0.93525 0.95612 0.92576 0.91993 0.95378 0.90910 0.95038 0.91015 0.90375 0.76818 0.88545 0.88561 0.88109 0.88105 0.81388 0.83434 0.81391 0.95620 0.91734 0.95422 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 11.15 55.49 0.62 -25.91 16 2 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -7.06 9.63 -15.06 -0.15 -7.20 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.34 16 9 N -0.60 -15.22 3.04 -172.01 -0.52 -15.74 16 10 C 0.15 3.16 6.69 -3.60 -0.02 3.14 16 11 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.26 4.63 -234.32 -1.08 -10.34 16 13 C 0.05 0.60 5.08 -3.83 -0.02 0.58 16 14 C 0.12 1.59 5.61 -4.04 -0.02 1.57 16 15 N -0.73 -7.55 5.56 -60.29 -0.33 -7.89 16 16 C 0.52 5.97 7.83 -10.99 -0.09 5.89 16 17 O -0.54 -8.52 15.98 5.56 0.09 -8.43 16 18 C -0.13 -1.08 5.68 -27.89 -0.16 -1.24 16 19 C -0.04 -0.36 4.94 -27.88 -0.14 -0.50 16 20 C 0.32 3.07 6.90 -157.19 -1.08 1.99 16 21 N -0.52 -4.72 10.34 -10.72 -0.11 -4.83 16 22 C 0.15 0.90 11.30 -17.20 -0.19 0.71 16 23 C -0.24 -1.07 10.17 -39.32 -0.40 -1.47 16 24 C 0.15 0.89 11.31 -17.20 -0.19 0.70 16 25 N -0.52 -4.67 10.33 -10.72 -0.11 -4.78 16 26 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 27 C 0.18 4.36 5.42 -3.60 -0.02 4.34 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 31 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.84 7.97 -51.93 -0.41 0.42 16 34 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.07 1.08 6.40 -51.93 -0.33 0.75 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.40 2.87 8.47 -40.82 -0.35 2.53 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.17 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.15 0.20 8.06 -52.49 -0.42 -0.23 16 44 H 0.17 0.47 8.06 -52.49 -0.42 0.04 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -34.90 391.25 -10.80 -45.70 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.60 Total: -0.34 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -2.61 Total: 9.84 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.55 Total: -69.49 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.90 -10.80 -45.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.957 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds