Wall clock time and date at job start Tue Mar 31 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47180 * 239.99575 * 3 2 1 5 5 H 1.48492 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47172 * 119.99584 * 3 2 1 7 7 C 1.38817 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 197.01690 * 7 2 1 9 9 N 1.36931 * 120.00122 * 17.02360 * 7 2 1 10 10 C 1.47074 * 120.88299 * 206.58225 * 9 7 2 11 11 C 1.53243 * 108.52644 * 231.16130 * 10 9 7 12 12 N 1.46895 * 109.33814 * 306.17284 * 11 10 9 13 13 C 1.46897 * 110.99991 * 187.24966 * 12 11 10 14 14 C 1.53000 * 109.47196 * 170.00052 * 13 12 11 15 15 N 1.46508 * 109.47038 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00016 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99946 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00176 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47002 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.46901 * 180.02562 * 19 18 16 21 21 N 1.31800 * 119.12060 * 269.72979 * 20 19 18 22 22 C 1.32337 * 120.81329 * 179.76082 * 21 20 19 23 23 C 1.38599 * 119.10686 * 0.50559 * 22 21 20 24 24 C 1.38596 * 118.40007 * 359.75031 * 23 22 21 25 25 N 1.31794 * 119.12336 * 90.00398 * 20 19 18 26 26 C 1.46900 * 111.27226 * 63.10190 * 12 11 10 27 27 C 1.47083 * 120.87964 * 26.56030 * 9 7 2 28 28 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.62891 * 111.45279 * 10 9 7 30 30 H 1.08997 * 109.79022 * 350.97212 * 10 9 7 31 31 H 1.08996 * 109.49529 * 186.20765 * 11 10 9 32 32 H 1.08997 * 109.49029 * 66.12911 * 11 10 9 33 33 H 1.08997 * 109.47393 * 50.00084 * 13 12 11 34 34 H 1.09000 * 109.47157 * 290.00069 * 13 12 11 35 35 H 1.09004 * 109.47456 * 60.00108 * 14 13 12 36 36 H 1.09001 * 109.47082 * 299.99507 * 14 13 12 37 37 H 0.96996 * 119.99689 * 0.02562 * 15 14 13 38 38 H 1.09002 * 109.46874 * 60.00408 * 18 16 15 39 39 H 1.09000 * 109.47263 * 300.00186 * 18 16 15 40 40 H 1.09001 * 109.47446 * 299.99741 * 19 18 16 41 41 H 1.08996 * 109.47452 * 60.00717 * 19 18 16 42 42 H 1.08003 * 120.44207 * 180.23979 * 22 21 20 43 43 H 1.07999 * 120.79513 * 179.77755 * 23 22 21 44 44 H 1.07998 * 120.44778 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.49647 * 56.85047 * 26 12 11 46 46 H 1.09001 * 109.49382 * 176.93710 * 26 12 11 47 47 H 1.08997 * 109.62931 * 248.54772 * 27 9 7 48 48 H 1.08997 * 109.63274 * 9.13208 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2226 0.2743 9 7 1.3705 -2.3622 -0.3461 10 6 1.8308 -3.6609 0.1684 11 6 2.0023 -4.6201 -1.0143 12 7 0.7548 -4.6656 -1.7886 13 6 0.8183 -5.7006 -2.8290 14 6 -0.5692 -5.8903 -3.4451 15 7 -0.5057 -6.9222 -4.4832 16 6 -1.6171 -7.2601 -5.1665 17 8 -2.6699 -6.7096 -4.9223 18 6 -1.5517 -8.3210 -6.2347 19 6 -2.9395 -8.5117 -6.8498 20 6 -2.8742 -9.5732 -7.9176 21 7 -2.6137 -9.2181 -9.1598 22 6 -2.5438 -10.1229 -10.1230 23 6 -2.7591 -11.4564 -9.8123 24 6 -3.0355 -11.7902 -8.4959 25 7 -3.0844 -10.8311 -7.5853 26 6 0.4401 -3.3536 -2.3697 27 6 0.2046 -2.3425 -1.2425 28 1 -0.4850 0.8400 -0.0004 29 1 1.0919 -4.0628 0.8616 30 1 2.7847 -3.5376 0.6811 31 1 2.2363 -5.6177 -0.6427 32 1 2.8136 -4.2696 -1.6522 33 1 1.1512 -6.6398 -2.3874 34 1 1.5211 -5.3943 -3.6038 35 1 -0.9022 -4.9511 -3.8869 36 1 -1.2720 -6.1968 -2.6703 37 1 0.3362 -7.3627 -4.6782 38 1 -1.2179 -9.2604 -5.7938 39 1 -0.8495 -8.0136 -7.0096 40 1 -3.6414 -8.8194 -6.0747 41 1 -3.2738 -7.5726 -7.2906 42 1 -2.3261 -9.8257 -11.1383 43 1 -2.7122 -12.2170 -10.5776 44 1 -3.2083 -12.8191 -8.2169 45 1 1.2732 -3.0207 -2.9887 46 1 -0.4589 -3.4328 -2.9810 47 1 -0.6906 -2.6177 -0.6849 48 1 0.0842 -1.3449 -1.6648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690079484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:05 Heat of formation + Delta-G solvation = 17.163424 kcal Electronic energy + Delta-G solvation = -27256.319327 eV Core-core repulsion = 23346.047179 eV Total energy + Delta-G solvation = -3910.272148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00211 -40.80568 -39.71460 -36.89142 -35.44681 -35.24001 -34.67507 -33.31407 -31.98773 -31.65222 -30.25272 -27.88223 -26.44162 -25.46304 -24.91185 -24.26722 -23.25265 -22.52332 -21.38733 -20.81008 -18.76068 -18.53852 -18.41067 -17.50143 -17.33440 -16.91149 -16.75586 -16.12604 -16.09156 -15.99810 -15.74888 -15.34858 -15.29423 -15.21399 -14.85302 -14.68389 -14.49989 -14.28142 -13.88019 -13.80142 -13.21561 -13.16805 -12.98872 -12.81633 -12.59576 -12.54751 -12.27849 -12.18449 -12.03640 -11.85531 -11.84268 -11.79598 -11.55949 -11.43259 -11.01383 -10.58344 -10.43489 -10.20963 -10.10329 -9.30202 -8.68826 -7.87483 -5.32484 -0.08471 0.16858 1.46388 1.49000 1.56021 1.61808 2.02574 2.50969 2.78081 2.89930 3.14525 3.25585 3.28243 3.67606 3.72192 3.78721 3.87247 4.04930 4.09184 4.12902 4.23506 4.24128 4.30379 4.34945 4.46851 4.49974 4.55404 4.61705 4.65294 4.71154 4.76091 4.83520 4.93808 5.00771 5.01457 5.02829 5.05041 5.20801 5.36622 5.39927 5.48119 5.60786 5.67354 6.07822 6.13954 6.23373 6.36950 6.53925 7.12716 7.12827 7.24710 7.83944 8.38321 9.19321 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.001612 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.176358 B =17361.291823 C =17743.536879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.543 5.543 13 C 0.055 3.945 14 C 0.128 3.872 15 N -0.714 5.714 16 C 0.513 3.487 17 O -0.585 6.585 18 C -0.114 4.114 19 C -0.035 4.035 20 C 0.306 3.694 21 N -0.543 5.543 22 C 0.136 3.864 23 C -0.219 4.219 24 C 0.136 3.864 25 N -0.541 5.541 26 C 0.050 3.950 27 C 0.185 3.815 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.028 0.972 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.197 0.803 43 H 0.186 0.814 44 H 0.198 0.802 45 H 0.023 0.977 46 H 0.075 0.925 47 H -0.004 1.004 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -27.975 -21.573 35.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.073 4.073 14 C 0.004 3.996 15 N -0.367 5.367 16 C 0.301 3.699 17 O -0.465 6.465 18 C -0.154 4.154 19 C -0.075 4.075 20 C 0.038 3.962 21 N -0.257 5.257 22 C -0.029 4.029 23 C -0.240 4.240 24 C -0.028 4.028 25 N -0.256 5.256 26 C -0.079 4.079 27 C 0.058 3.942 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.214 0.786 43 H 0.203 0.797 44 H 0.215 0.785 45 H 0.041 0.959 46 H 0.093 0.907 47 H 0.014 0.986 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.184 -26.871 -20.347 33.726 hybrid contribution 0.916 0.753 -0.930 1.507 sum -0.269 -26.117 -21.278 33.689 Atomic orbital electron populations 1.70194 1.06769 1.25941 1.55415 1.25831 0.96050 1.01629 1.01312 0.85302 0.77497 0.79036 0.78372 1.20420 1.22130 1.19908 1.19533 0.92983 0.85979 1.41083 0.91211 1.44394 1.34116 1.02304 1.52998 1.21168 0.97568 0.85500 0.94234 1.22470 0.89067 1.00274 0.95260 1.61751 1.35045 1.05255 1.24840 1.22190 0.95025 0.96530 0.93596 1.21119 0.97850 0.90765 0.89883 1.45760 1.12329 1.40668 1.37923 1.21013 0.83064 0.83428 0.82396 1.90732 1.31261 1.55995 1.68477 1.21446 0.98432 0.98603 0.96961 1.20001 0.97876 0.95309 0.94270 1.23043 0.91227 0.90863 0.91060 1.68291 1.15241 1.40427 1.01767 1.23905 0.89738 0.89593 0.99677 1.23336 1.01645 0.99365 0.99623 1.23914 0.89476 1.00053 0.89397 1.68287 1.15767 1.01751 1.39760 1.22610 0.99283 0.89475 0.96564 1.20604 0.87885 0.96338 0.89323 0.94106 0.96751 0.91813 0.88076 0.95326 0.87891 0.93532 0.93268 0.92257 0.74491 0.86563 0.86817 0.89620 0.89801 0.78623 0.79663 0.78501 0.95888 0.90702 0.98638 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 11.15 21.65 0.24 -56.95 16 2 C -0.05 -3.03 4.94 84.86 0.42 -2.61 16 3 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.27 -14.94 9.63 84.04 0.81 -14.13 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -31.94 3.04 -698.12 -2.12 -34.06 16 10 C 0.14 5.92 6.69 86.35 0.58 6.50 16 11 C 0.06 1.90 5.62 86.39 0.49 2.38 16 12 N -0.54 -18.14 4.63 -895.27 -4.14 -22.28 16 13 C 0.05 1.28 5.08 86.30 0.44 1.72 16 14 C 0.13 3.27 5.61 86.38 0.48 3.75 16 15 N -0.71 -13.54 5.56 -463.05 -2.57 -16.11 16 16 C 0.51 11.69 7.83 87.66 0.69 12.38 16 17 O -0.58 -19.30 15.98 -3.03 -0.05 -19.34 16 18 C -0.11 -1.77 5.68 29.85 0.17 -1.60 16 19 C -0.03 -0.69 4.94 29.85 0.15 -0.54 16 20 C 0.31 5.72 6.90 138.75 0.96 6.68 16 21 N -0.54 -9.51 10.34 -187.83 -1.94 -11.46 16 22 C 0.14 1.35 11.30 84.70 0.96 2.30 16 23 C -0.22 -1.31 10.17 22.44 0.23 -1.08 16 24 C 0.14 1.31 11.31 84.70 0.96 2.27 16 25 N -0.54 -9.30 10.33 -187.84 -1.94 -11.24 16 26 C 0.05 1.97 5.46 86.39 0.47 2.45 16 27 C 0.18 9.42 5.42 86.35 0.47 9.89 16 28 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 29 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 2.53 7.96 -2.39 -0.02 2.51 16 31 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.88 7.97 -2.39 -0.02 1.86 16 34 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.05 1.49 6.40 -2.38 -0.02 1.47 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.42 4.69 8.47 -92.71 -0.79 3.90 16 38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 41 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 42 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 43 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 44 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 2.78 6.16 -2.39 -0.01 2.77 16 47 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.06 3.17 6.12 -2.39 -0.01 3.15 16 Total: -1.00 -80.24 391.25 -2.07 -82.31 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.18 Total: 11.12 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 8.26 Total: 30.36 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -12.48 Total: -152.11 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -80.24 -2.07 -82.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.471 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds