Wall clock time and date at job start Tue Mar 31 2020 18:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48501 * 109.47090 * 269.99513 * 3 2 1 5 5 H 1.48504 * 109.47115 * 29.99681 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00516 * 163.30523 * 7 2 1 9 9 N 1.36937 * 119.99849 * 343.30109 * 7 2 1 10 10 C 1.47168 * 120.71003 * 154.58444 * 9 7 2 11 11 C 1.53888 * 108.02591 * 132.75841 * 10 9 7 12 12 H 1.08999 * 112.09658 * 182.54625 * 11 10 9 13 13 C 1.54550 * 107.83317 * 306.50527 * 11 10 9 14 14 C 1.54277 * 104.84511 * 89.07431 * 13 11 10 15 15 C 1.54545 * 104.85316 * 359.97438 * 14 13 11 16 16 H 1.09008 * 112.18139 * 146.40732 * 15 14 13 17 17 C 1.48374 * 120.34764 * 334.43303 * 9 7 2 18 18 N 1.48306 * 107.20793 * 58.36542 * 11 10 9 19 19 C 1.34782 * 128.07866 * 106.70118 * 18 11 10 20 20 O 1.21283 * 120.00084 * 179.97438 * 19 18 11 21 21 C 1.50704 * 119.99777 * 0.02562 * 19 18 11 22 22 C 1.52998 * 109.47008 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47002 * 180.02562 * 22 21 19 24 24 C 1.53003 * 109.47290 * 179.97438 * 23 22 21 25 25 C 1.50695 * 109.47197 * 179.97438 * 24 23 22 26 26 C 1.35349 * 126.91470 * 84.99802 * 25 24 23 27 27 N 1.33773 * 106.49708 * 179.97438 * 26 25 24 28 28 N 1.28635 * 108.88566 * 359.97438 * 27 26 25 29 29 N 1.28719 * 110.17837 * 359.76349 * 28 27 26 30 30 H 0.96994 * 125.86584 * 180.23934 * 29 28 27 31 31 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.74527 * 13.12927 * 10 9 7 33 33 H 1.08993 * 109.79249 * 252.41571 * 10 9 7 34 34 H 1.09000 * 110.36013 * 330.23612 * 13 11 10 35 35 H 1.08993 * 110.45697 * 207.96529 * 13 11 10 36 36 H 1.09003 * 110.36713 * 241.15644 * 14 13 11 37 37 H 1.09009 * 110.45514 * 118.88832 * 14 13 11 38 38 H 1.09005 * 110.02062 * 107.42492 * 17 9 7 39 39 H 1.09003 * 110.08470 * 346.30099 * 17 9 7 40 40 H 1.09001 * 109.46396 * 299.99774 * 21 19 18 41 41 H 1.08999 * 109.47441 * 59.99783 * 21 19 18 42 42 H 1.09000 * 109.46805 * 299.99487 * 22 21 19 43 43 H 1.08999 * 109.47460 * 59.99472 * 22 21 19 44 44 H 1.09000 * 109.46908 * 299.99408 * 23 22 21 45 45 H 1.08999 * 109.47457 * 59.99454 * 23 22 21 46 46 H 1.09000 * 109.46769 * 299.99625 * 24 23 22 47 47 H 1.08999 * 109.47209 * 59.99433 * 24 23 22 48 48 H 1.07998 * 126.75262 * 359.94299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2219 -0.2692 9 7 1.3688 -2.3632 0.3397 10 6 1.8505 -3.6617 -0.1582 11 6 1.9044 -4.6373 1.0307 12 1 2.2968 -5.6127 0.7432 13 6 2.7441 -3.9766 2.1474 14 6 1.7274 -3.1705 2.9820 15 6 0.3659 -3.4166 2.2935 16 1 -0.4582 -3.4371 3.0068 17 6 0.1760 -2.3300 1.2215 18 7 0.5358 -4.7151 1.5968 19 6 -0.3473 -5.7287 1.5003 20 8 -1.4365 -5.6360 2.0256 21 6 0.0193 -6.9776 0.7408 22 6 -1.1507 -7.9625 0.7837 23 6 -0.7784 -9.2307 0.0132 24 6 -1.9482 -10.2159 0.0566 25 6 -1.5816 -11.4648 -0.7029 26 6 -0.9013 -12.5344 -0.2286 27 7 -0.8049 -13.4029 -1.2416 28 7 -1.3875 -12.9043 -2.2744 29 7 -1.8720 -11.7451 -1.9945 30 1 -2.3593 -11.1703 -2.6051 31 1 -0.4849 0.8401 -0.0004 32 1 2.8467 -3.5458 -0.5850 33 1 1.1669 -4.0427 -0.9167 34 1 3.4927 -3.3120 1.7162 35 1 3.2231 -4.7369 2.7642 36 1 1.9761 -2.1094 2.9613 37 1 1.7045 -3.5340 4.0095 38 1 -0.7230 -2.5380 0.6412 39 1 0.0899 -1.3535 1.6981 40 1 0.2400 -6.7210 -0.2953 41 1 0.8971 -7.4357 1.1966 42 1 -1.3718 -8.2191 1.8198 43 1 -2.0283 -7.5043 0.3277 44 1 -0.5570 -8.9745 -1.0229 45 1 0.0991 -9.6888 0.4696 46 1 -2.1691 -10.4721 1.0928 47 1 -2.8259 -9.7581 -0.3996 48 1 -0.5122 -12.6616 0.7708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690208364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:24 Heat of formation + Delta-G solvation = 77.565065 kcal Electronic energy + Delta-G solvation = -28641.697959 eV Core-core repulsion = 24734.045022 eV Total energy + Delta-G solvation = -3907.652936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.62352 -40.15255 -38.04597 -36.08938 -34.09708 -33.68252 -32.65501 -31.27205 -31.13892 -30.34513 -29.15901 -26.37244 -25.26153 -23.70671 -23.31691 -23.03140 -22.16936 -21.46496 -20.58139 -19.95850 -18.55346 -18.10835 -17.28537 -16.41209 -16.16254 -15.95765 -15.25922 -15.09946 -14.85740 -14.77740 -14.47268 -14.34233 -13.54202 -13.35936 -13.19298 -12.95900 -12.82258 -12.64709 -12.29145 -12.13500 -11.96944 -11.90806 -11.54995 -11.53470 -11.35660 -11.16964 -11.14398 -10.92080 -10.87010 -10.79541 -10.59172 -10.53129 -10.37458 -10.03334 -9.87403 -9.72036 -9.52653 -9.35640 -8.59931 -8.23488 -6.77480 -5.86247 -3.28062 1.20787 2.22158 2.39625 3.00743 3.31607 3.35075 3.39660 3.40608 4.04335 4.28629 4.40748 4.53318 4.59047 4.70444 4.83450 5.01128 5.02950 5.12029 5.20450 5.22368 5.27695 5.32013 5.32438 5.48441 5.51143 5.55119 5.58397 5.67448 5.74432 5.79045 5.80184 6.03427 6.06397 6.13121 6.19414 6.29542 6.35861 6.40034 6.47348 6.54725 6.59464 6.70412 6.92326 7.23926 7.49987 7.69193 8.10878 8.10990 8.28991 8.56755 9.07874 9.72197 10.28795 11.22167 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002116 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.816035 B =13229.802117 C =13497.938024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.139 3.861 11 C 0.107 3.893 12 H 0.086 0.914 13 C -0.111 4.111 14 C -0.113 4.113 15 C 0.104 3.896 16 H 0.086 0.914 17 C 0.175 3.825 18 N -0.606 5.606 19 C 0.528 3.472 20 O -0.558 6.558 21 C -0.135 4.135 22 C -0.102 4.102 23 C -0.115 4.115 24 C -0.050 4.050 25 C -0.002 4.002 26 C -0.050 4.050 27 N -0.267 5.267 28 N -0.086 5.086 29 N -0.391 5.391 30 H 0.448 0.552 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -17.791 2.088 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.011 3.989 11 C 0.002 3.998 12 H 0.104 0.896 13 C -0.149 4.149 14 C -0.151 4.151 15 C 0.001 3.999 16 H 0.104 0.896 17 C 0.049 3.951 18 N -0.339 5.339 19 C 0.317 3.683 20 O -0.437 6.437 21 C -0.175 4.175 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.090 4.090 25 C -0.136 4.136 26 C -0.207 4.207 27 N -0.134 5.134 28 N -0.066 5.066 29 N -0.111 5.111 30 H 0.293 0.707 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.640 -18.861 1.325 18.919 hybrid contribution 0.000 2.168 0.230 2.180 sum -0.640 -16.693 1.555 16.778 Atomic orbital electron populations 1.70029 1.05241 1.25632 1.53879 1.25017 0.95280 0.98378 1.00967 0.86310 0.79101 0.83709 0.77717 1.21468 1.21572 1.20466 1.19142 0.92459 0.84498 1.42104 0.91448 1.44359 1.32222 1.00803 1.53988 1.21427 0.98179 0.87089 0.92160 1.22987 0.81842 0.98873 0.96134 0.89625 1.22293 0.97889 0.98540 0.96202 1.22319 0.94289 1.01728 0.96784 1.23172 0.97405 0.83544 0.95824 0.89638 1.21471 0.88606 0.95824 0.89189 1.49249 1.15445 1.16408 1.52803 1.20158 0.83733 0.83682 0.80774 1.90661 1.22297 1.81550 1.49215 1.21604 1.00244 0.94058 1.01567 1.21315 0.97807 0.93464 1.01428 1.21634 0.97510 0.94944 1.01263 1.20236 0.99343 0.89313 1.00079 1.22428 1.04337 1.00746 0.86116 1.23443 1.04613 0.91469 1.01213 1.75101 1.15939 1.25483 0.96876 1.78302 1.12460 0.94764 1.21120 1.45163 1.39612 1.15596 1.10758 0.70684 0.93511 0.91868 0.96490 0.89952 0.92926 0.89598 0.93162 0.95665 0.89011 0.89197 0.89359 0.90891 0.90985 0.91776 0.91058 0.88390 0.90085 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 11.12 55.49 0.62 -24.71 16 2 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.25 -6.40 9.64 -15.06 -0.15 -6.54 16 8 H 0.07 1.66 7.87 -52.49 -0.41 1.25 16 9 N -0.59 -13.55 2.31 -170.13 -0.39 -13.95 16 10 C 0.14 2.60 6.03 -3.21 -0.02 2.58 16 11 C 0.11 1.62 3.97 -65.66 -0.26 1.36 16 12 H 0.09 1.02 7.46 -51.93 -0.39 0.64 16 13 C -0.11 -1.66 6.18 -25.25 -0.16 -1.81 16 14 C -0.11 -1.88 6.18 -25.25 -0.16 -2.04 16 15 C 0.10 1.98 4.07 -65.68 -0.27 1.72 16 16 H 0.09 1.66 7.93 -51.92 -0.41 1.25 16 17 C 0.17 4.03 4.64 -2.58 -0.01 4.02 16 18 N -0.61 -10.38 2.76 -153.05 -0.42 -10.80 16 19 C 0.53 8.68 7.92 -10.98 -0.09 8.59 16 20 O -0.56 -11.07 16.30 5.55 0.09 -10.98 16 21 C -0.13 -1.50 4.70 -27.88 -0.13 -1.63 16 22 C -0.10 -0.95 4.50 -26.73 -0.12 -1.07 16 23 C -0.12 -0.74 5.20 -26.73 -0.14 -0.88 16 24 C -0.05 -0.26 5.78 -27.88 -0.16 -0.43 16 25 C 0.00 -0.02 6.56 -82.09 -0.54 -0.55 16 26 C -0.05 -0.43 11.99 -17.74 -0.21 -0.64 16 27 N -0.27 -3.08 12.41 30.23 0.38 -2.70 16 28 N -0.09 -0.93 13.38 60.35 0.81 -0.12 16 29 N -0.39 -2.83 6.98 33.54 0.23 -2.59 16 30 H 0.45 1.70 8.96 -190.40 -1.71 -0.01 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.30 7.84 -51.93 -0.41 0.90 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.59 7.83 -51.93 -0.41 1.18 16 37 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 2.33 6.33 -51.93 -0.33 2.00 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.07 0.72 8.10 -51.93 -0.42 0.29 16 43 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -33.26 384.53 -9.51 -42.77 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.10 Total: -1.07 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.49 Total: 2.66 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 1.22 Total: -54.87 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.26 -9.51 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690208364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.334 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds