Wall clock time and date at job start Tue Mar 31 2020 18:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48501 * 109.47090 * 269.99513 * 3 2 1 5 5 H 1.48504 * 109.47115 * 29.99681 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00516 * 163.30523 * 7 2 1 9 9 N 1.36937 * 119.99849 * 343.30109 * 7 2 1 10 10 C 1.47168 * 120.71003 * 154.58444 * 9 7 2 11 11 C 1.53888 * 108.02591 * 132.75841 * 10 9 7 12 12 H 1.08999 * 112.09658 * 182.54625 * 11 10 9 13 13 C 1.54550 * 107.83317 * 306.50527 * 11 10 9 14 14 C 1.54277 * 104.84511 * 89.07431 * 13 11 10 15 15 C 1.54545 * 104.85316 * 359.97438 * 14 13 11 16 16 H 1.09008 * 112.18139 * 146.40732 * 15 14 13 17 17 C 1.48374 * 120.34764 * 334.43303 * 9 7 2 18 18 N 1.48306 * 107.20793 * 58.36542 * 11 10 9 19 19 C 1.34782 * 128.07866 * 106.70118 * 18 11 10 20 20 O 1.21283 * 120.00084 * 179.97438 * 19 18 11 21 21 C 1.50704 * 119.99777 * 0.02562 * 19 18 11 22 22 C 1.52998 * 109.47008 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47002 * 180.02562 * 22 21 19 24 24 C 1.53003 * 109.47290 * 179.97438 * 23 22 21 25 25 C 1.50695 * 109.47197 * 179.97438 * 24 23 22 26 26 C 1.35349 * 126.91470 * 84.99802 * 25 24 23 27 27 N 1.33773 * 106.49708 * 179.97438 * 26 25 24 28 28 N 1.28635 * 108.88566 * 359.97438 * 27 26 25 29 29 N 1.28719 * 110.17837 * 359.76349 * 28 27 26 30 30 H 0.96994 * 125.86584 * 180.23934 * 29 28 27 31 31 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.74527 * 13.12927 * 10 9 7 33 33 H 1.08993 * 109.79249 * 252.41571 * 10 9 7 34 34 H 1.09000 * 110.36013 * 330.23612 * 13 11 10 35 35 H 1.08993 * 110.45697 * 207.96529 * 13 11 10 36 36 H 1.09003 * 110.36713 * 241.15644 * 14 13 11 37 37 H 1.09009 * 110.45514 * 118.88832 * 14 13 11 38 38 H 1.09005 * 110.02062 * 107.42492 * 17 9 7 39 39 H 1.09003 * 110.08470 * 346.30099 * 17 9 7 40 40 H 1.09001 * 109.46396 * 299.99774 * 21 19 18 41 41 H 1.08999 * 109.47441 * 59.99783 * 21 19 18 42 42 H 1.09000 * 109.46805 * 299.99487 * 22 21 19 43 43 H 1.08999 * 109.47460 * 59.99472 * 22 21 19 44 44 H 1.09000 * 109.46908 * 299.99408 * 23 22 21 45 45 H 1.08999 * 109.47457 * 59.99454 * 23 22 21 46 46 H 1.09000 * 109.46769 * 299.99625 * 24 23 22 47 47 H 1.08999 * 109.47209 * 59.99433 * 24 23 22 48 48 H 1.07998 * 126.75262 * 359.94299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2219 -0.2692 9 7 1.3688 -2.3632 0.3397 10 6 1.8505 -3.6617 -0.1582 11 6 1.9044 -4.6373 1.0307 12 1 2.2968 -5.6127 0.7432 13 6 2.7441 -3.9766 2.1474 14 6 1.7274 -3.1705 2.9820 15 6 0.3659 -3.4166 2.2935 16 1 -0.4582 -3.4371 3.0068 17 6 0.1760 -2.3300 1.2215 18 7 0.5358 -4.7151 1.5968 19 6 -0.3473 -5.7287 1.5003 20 8 -1.4365 -5.6360 2.0256 21 6 0.0193 -6.9776 0.7408 22 6 -1.1507 -7.9625 0.7837 23 6 -0.7784 -9.2307 0.0132 24 6 -1.9482 -10.2159 0.0566 25 6 -1.5816 -11.4648 -0.7029 26 6 -0.9013 -12.5344 -0.2286 27 7 -0.8049 -13.4029 -1.2416 28 7 -1.3875 -12.9043 -2.2744 29 7 -1.8720 -11.7451 -1.9945 30 1 -2.3593 -11.1703 -2.6051 31 1 -0.4849 0.8401 -0.0004 32 1 2.8467 -3.5458 -0.5850 33 1 1.1669 -4.0427 -0.9167 34 1 3.4927 -3.3120 1.7162 35 1 3.2231 -4.7369 2.7642 36 1 1.9761 -2.1094 2.9613 37 1 1.7045 -3.5340 4.0095 38 1 -0.7230 -2.5380 0.6412 39 1 0.0899 -1.3535 1.6981 40 1 0.2400 -6.7210 -0.2953 41 1 0.8971 -7.4357 1.1966 42 1 -1.3718 -8.2191 1.8198 43 1 -2.0283 -7.5043 0.3277 44 1 -0.5570 -8.9745 -1.0229 45 1 0.0991 -9.6888 0.4696 46 1 -2.1691 -10.4721 1.0928 47 1 -2.8259 -9.7581 -0.3996 48 1 -0.5122 -12.6616 0.7708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690208364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:23 Heat of formation + Delta-G solvation = 56.155210 kcal Electronic energy + Delta-G solvation = -28642.626360 eV Core-core repulsion = 24734.045022 eV Total energy + Delta-G solvation = -3908.581337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.24615 -41.54046 -39.38452 -36.77127 -35.88150 -34.34921 -33.47409 -32.98489 -32.39467 -31.91823 -29.91785 -28.07180 -26.16655 -25.23929 -24.56327 -23.94767 -23.03064 -22.18626 -21.81809 -21.26319 -19.66912 -19.11910 -18.72541 -17.70735 -17.03224 -16.90906 -16.77879 -16.38262 -16.11289 -15.70677 -15.43370 -15.27340 -15.09141 -14.82584 -14.41295 -14.31135 -13.75846 -13.69481 -13.64750 -13.38115 -13.12842 -13.02921 -12.84903 -12.66549 -12.52223 -12.27263 -12.23751 -12.15550 -12.05973 -11.97786 -11.78042 -11.70812 -11.57300 -11.52900 -11.39991 -11.12549 -10.76622 -10.57248 -10.08231 -9.74496 -8.66881 -7.85351 -5.29631 0.61599 1.47295 1.49855 1.57470 1.58382 1.73564 1.91973 2.09636 2.52000 3.30146 3.44176 3.51830 3.64818 3.78949 3.88460 3.96939 4.03657 4.04895 4.15359 4.21480 4.25205 4.41477 4.42866 4.52714 4.58176 4.62109 4.63236 4.74492 4.83726 4.87794 4.89047 4.96964 5.00975 5.05822 5.11956 5.15469 5.17520 5.25282 5.27696 5.39788 5.41424 5.52184 5.56415 5.63198 5.68609 6.01498 6.33648 6.81280 7.09994 7.26817 7.46333 7.81398 8.35563 9.21073 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002116 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.816035 B =13229.802117 C =13497.938024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.057 4.057 3 Si 0.965 3.035 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.131 3.869 11 C 0.118 3.882 12 H 0.138 0.862 13 C -0.105 4.105 14 C -0.107 4.107 15 C 0.107 3.893 16 H 0.073 0.927 17 C 0.189 3.811 18 N -0.611 5.611 19 C 0.518 3.482 20 O -0.600 6.600 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.104 4.104 24 C -0.045 4.045 25 C 0.011 3.989 26 C -0.060 4.060 27 N -0.305 5.305 28 N -0.119 5.119 29 N -0.379 5.379 30 H 0.461 0.539 31 H 0.247 0.753 32 H 0.079 0.921 33 H 0.006 0.994 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.073 0.927 38 H -0.023 1.023 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -19.833 2.622 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.794 3.206 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.005 3.995 11 C 0.015 3.985 12 H 0.155 0.845 13 C -0.143 4.143 14 C -0.145 4.145 15 C 0.002 3.998 16 H 0.091 0.909 17 C 0.063 3.937 18 N -0.343 5.343 19 C 0.309 3.691 20 O -0.482 6.482 21 C -0.165 4.165 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.124 4.124 26 C -0.218 4.218 27 N -0.171 5.171 28 N -0.099 5.099 29 N -0.102 5.102 30 H 0.309 0.691 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.023 0.977 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.092 0.908 38 H -0.005 1.005 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.129 0.871 47 H 0.108 0.892 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.837 -20.948 1.822 21.107 hybrid contribution -0.823 2.823 0.053 2.941 sum 1.014 -18.125 1.875 18.250 Atomic orbital electron populations 1.70214 1.06878 1.25608 1.56357 1.25769 0.95873 1.01557 1.01935 0.85309 0.78223 0.79776 0.77336 1.21595 1.22708 1.18863 1.19544 0.92941 0.85364 1.39900 0.90351 1.44563 1.31699 1.02080 1.54291 1.21691 0.98329 0.85815 0.93695 1.23042 0.80898 1.00233 0.94372 0.84492 1.22306 0.96978 0.98986 0.96018 1.22235 0.93131 1.00842 0.98305 1.22822 0.98728 0.83763 0.94440 0.90925 1.21071 0.87197 0.95806 0.89625 1.49390 1.16579 1.15591 1.52761 1.21286 0.82800 0.84815 0.80155 1.90642 1.24085 1.82528 1.50907 1.21696 1.02074 0.91467 1.01292 1.21256 0.96551 0.94209 1.01495 1.21518 0.98229 0.93571 1.00945 1.20268 0.99283 0.88218 1.00681 1.22644 1.03177 1.00796 0.85751 1.23962 1.04726 0.91314 1.01767 1.75057 1.17147 1.27011 0.97916 1.78246 1.13912 0.96215 1.21528 1.45218 1.38772 1.14928 1.11270 0.69114 0.94432 0.90225 0.97656 0.90685 0.89106 0.92093 0.90807 1.00534 0.92373 0.88077 0.86011 0.91363 0.92879 0.91541 0.89799 0.87073 0.89164 0.76940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 11.12 21.65 0.24 -55.34 16 2 C -0.06 -3.06 4.94 84.86 0.42 -2.64 16 3 Si 0.96 43.43 29.59 68.60 2.03 45.46 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.25 -12.58 9.64 84.03 0.81 -11.77 16 8 H 0.08 3.76 7.87 -2.91 -0.02 3.74 16 9 N -0.60 -27.92 2.31 -692.17 -1.60 -29.52 16 10 C 0.13 4.65 6.03 86.55 0.52 5.17 16 11 C 0.12 3.16 3.97 45.47 0.18 3.34 16 12 H 0.14 2.37 7.46 -2.39 -0.02 2.35 16 13 C -0.10 -2.72 6.18 31.55 0.20 -2.52 16 14 C -0.11 -3.41 6.18 31.55 0.20 -3.21 16 15 C 0.11 4.13 4.07 45.44 0.19 4.32 16 16 H 0.07 2.94 7.93 -2.38 -0.02 2.92 16 17 C 0.19 9.20 4.64 86.29 0.40 9.60 16 18 N -0.61 -19.87 2.76 -756.52 -2.08 -21.96 16 19 C 0.52 16.17 7.92 87.66 0.69 16.87 16 20 O -0.60 -23.80 16.30 -3.04 -0.05 -23.85 16 21 C -0.13 -2.33 4.70 29.85 0.14 -2.19 16 22 C -0.10 -1.53 4.50 30.59 0.14 -1.39 16 23 C -0.10 -0.94 5.20 30.59 0.16 -0.78 16 24 C -0.05 -0.33 5.78 29.85 0.17 -0.16 16 25 C 0.01 0.13 6.56 41.35 0.27 0.40 16 26 C -0.06 -0.88 11.99 83.73 1.00 0.12 16 27 N -0.31 -6.76 12.41 -58.26 -0.72 -7.48 16 28 N -0.12 -2.47 13.38 37.02 0.50 -1.98 16 29 N -0.38 -4.85 6.98 -47.79 -0.33 -5.18 16 30 H 0.46 2.72 8.96 -219.96 -1.97 0.75 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.08 2.57 7.96 -2.39 -0.02 2.55 16 33 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.07 2.11 7.84 -2.39 -0.02 2.09 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 2.25 7.83 -2.39 -0.02 2.23 16 37 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 38 H -0.02 -1.33 8.14 -2.38 -0.02 -1.35 16 39 H 0.06 3.18 6.33 -2.39 -0.02 3.16 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.12 1.51 8.05 -2.39 -0.02 1.49 16 42 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -77.74 384.53 2.45 -75.29 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -1.01 Total: 9.42 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 5.49 Total: 15.15 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -4.00 Total: -121.46 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -77.74 2.45 -75.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690208364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.441 kcal (2) G-P(sol) polarization free energy of solvation -77.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds