Wall clock time and date at job start Tue Mar 31 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99753 * 2 1 4 4 H 1.48499 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47054 * 300.00561 * 3 2 1 6 6 H 1.48497 * 109.47099 * 60.00300 * 3 2 1 7 7 C 1.38811 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00240 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46713 * 325.00127 * 10 9 7 12 12 C 1.52997 * 109.47384 * 205.00033 * 10 9 7 13 13 N 1.46496 * 109.47194 * 54.99585 * 12 10 9 14 14 C 1.34777 * 120.00271 * 179.97438 * 13 12 10 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.46505 * 109.47064 * 180.02562 * 16 14 13 18 18 N 1.29097 * 126.00602 * 269.69229 * 17 16 14 19 19 N 1.29023 * 110.25825 * 179.77566 * 18 17 16 20 20 C 1.32907 * 108.63382 * 0.41503 * 19 18 17 21 21 C 1.34397 * 126.00190 * 90.00110 * 17 16 14 22 22 C 1.50527 * 129.25890 * 0.21015 * 21 17 16 23 23 C 1.53437 * 108.32805 * 163.46004 * 22 21 17 24 24 C 1.53110 * 109.54995 * 49.71918 * 23 22 21 25 25 C 1.50598 * 129.16673 * 179.85760 * 20 19 18 26 26 C 1.53002 * 109.47240 * 84.99672 * 10 9 7 27 27 C 1.53003 * 117.49668 * 8.75211 * 26 10 9 28 28 C 1.52998 * 117.49869 * 300.08963 * 26 10 9 29 29 H 0.96994 * 120.00313 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00054 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47045 * 294.99712 * 12 10 9 32 32 H 1.09001 * 109.47375 * 174.99637 * 12 10 9 33 33 H 0.97005 * 120.00266 * 0.02562 * 13 12 10 34 34 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 35 35 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 36 36 H 1.09007 * 109.69705 * 283.16850 * 22 21 17 37 37 H 1.08995 * 109.69732 * 43.75053 * 22 21 17 38 38 H 1.08995 * 109.45932 * 169.74057 * 23 22 21 39 39 H 1.08991 * 109.45741 * 289.71349 * 23 22 21 40 40 H 1.08999 * 109.45563 * 49.96709 * 24 23 22 41 41 H 1.08998 * 109.45037 * 169.90897 * 24 23 22 42 42 H 1.09003 * 109.68948 * 43.76784 * 25 20 19 43 43 H 1.08999 * 109.72960 * 283.20244 * 25 20 19 44 44 H 1.09001 * 115.54716 * 154.41853 * 26 10 9 45 45 H 1.08995 * 117.50097 * 359.97438 * 27 26 10 46 46 H 1.08993 * 117.49530 * 145.02108 * 27 26 10 47 47 H 1.09000 * 117.49553 * 214.97676 * 28 26 10 48 48 H 1.09000 * 117.50155 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5900 12 6 1.1811 -4.7521 -0.6101 13 7 0.7344 -4.3355 -1.9417 14 6 -0.0546 -5.1477 -2.6726 15 8 -0.3951 -6.2234 -2.2278 16 6 -0.5136 -4.7193 -4.0426 17 7 -1.3536 -5.7682 -4.6263 18 7 -0.9430 -6.7513 -5.3554 19 7 -1.9380 -7.4955 -5.7032 20 6 -3.0520 -6.9812 -5.1923 21 6 -2.6877 -5.8726 -4.5017 22 6 -3.6484 -4.9786 -3.7643 23 6 -5.0679 -5.2812 -4.2620 24 6 -5.3120 -6.7923 -4.2267 25 6 -4.4697 -7.4746 -5.3126 26 6 2.4222 -4.0355 1.4365 27 6 1.8135 -3.1985 2.5634 28 6 3.2997 -3.0601 2.2235 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 0.3136 -4.9201 0.0280 32 1 1.7560 -5.6745 -0.6919 33 1 1.0071 -3.4753 -2.2977 34 1 0.3542 -4.5513 -4.6805 35 1 -1.0887 -3.7970 -3.9612 36 1 -3.5849 -5.1746 -2.6939 37 1 -3.4045 -3.9349 -3.9621 38 1 -5.7923 -4.7814 -3.6190 39 1 -5.1791 -4.9195 -5.2841 40 1 -5.0293 -7.1830 -3.2492 41 1 -6.3680 -6.9937 -4.4064 42 1 -4.4956 -8.5552 -5.1725 43 1 -4.8649 -7.2222 -6.2966 44 1 2.5635 -5.1006 1.6204 45 1 1.1541 -2.3778 2.2811 46 1 1.5548 -3.7129 3.4889 47 1 4.0180 -3.4834 2.9256 48 1 3.6173 -2.1483 1.7177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713118933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:31 Heat of formation + Delta-G solvation = 91.040750 kcal Electronic energy + Delta-G solvation = -28901.473309 eV Core-core repulsion = 24994.404723 eV Total energy + Delta-G solvation = -3907.068587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.39804 -39.67160 -37.76892 -37.19120 -34.92479 -34.59300 -33.40077 -31.24572 -30.66081 -30.18343 -29.09481 -27.62416 -24.27082 -23.92621 -23.01499 -22.74122 -21.74864 -21.40945 -20.38071 -19.70854 -19.21445 -17.85290 -17.40968 -17.17538 -16.06418 -15.68499 -15.46942 -15.23753 -14.88558 -14.65620 -14.16999 -14.09560 -14.00907 -13.90864 -13.79016 -13.53034 -13.20027 -13.05504 -12.68448 -12.30188 -12.09018 -11.56537 -11.43813 -11.34289 -11.28512 -11.18814 -11.16767 -10.99711 -10.96269 -10.62474 -10.50078 -10.43779 -10.19001 -9.82165 -9.72828 -9.53367 -9.27224 -9.11140 -8.90682 -8.80810 -7.20468 -5.96692 -3.27097 1.53018 2.15104 2.51200 2.58177 3.26754 3.30358 3.37363 3.39030 4.06314 4.35768 4.38875 4.52526 4.53404 4.61026 4.64253 4.73939 4.76936 4.83852 5.18233 5.23344 5.29581 5.34590 5.34738 5.39696 5.43863 5.62646 5.63268 5.70403 5.74183 5.77962 5.84301 5.91619 5.92550 5.94287 5.97545 6.07856 6.24668 6.29155 6.30976 6.49524 6.53620 6.58499 6.70867 6.90515 7.17971 7.54981 7.57316 8.18456 8.20951 8.55241 9.33355 9.85395 10.21881 11.24685 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.002817 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.468957 B = 9935.762150 C =10760.682937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.059 0.941 12 C 0.120 3.880 13 N -0.702 5.702 14 C 0.499 3.501 15 O -0.533 6.533 16 C 0.093 3.907 17 N -0.265 5.265 18 N -0.088 5.088 19 N -0.263 5.263 20 C -0.026 4.026 21 C -0.003 4.003 22 C -0.050 4.050 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.030 4.030 26 C -0.179 4.179 27 C -0.163 4.163 28 C -0.175 4.175 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.413 0.587 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -8.413 -6.873 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.082 3.918 11 H 0.077 0.923 12 C -0.004 4.004 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.410 6.410 16 C -0.033 4.033 17 N -0.056 5.056 18 N -0.066 5.066 19 N -0.128 5.128 20 C -0.165 4.165 21 C -0.137 4.137 22 C -0.089 4.089 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.069 4.069 26 C -0.201 4.201 27 C -0.200 4.200 28 C -0.212 4.212 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.820 -9.710 -7.214 13.424 hybrid contribution -0.219 2.028 0.642 2.138 sum -6.039 -7.683 -6.572 11.776 Atomic orbital electron populations 1.69653 1.05033 1.25736 1.57171 1.24703 0.95429 0.97579 1.02615 0.86200 0.78911 0.84299 0.77240 1.20555 1.21904 1.21859 1.19206 0.90982 0.83716 1.43260 0.90956 1.42485 1.05806 0.99498 1.88179 1.19996 0.94060 0.85916 0.91873 0.92333 1.21649 0.98983 0.97700 0.82043 1.45848 1.49956 1.21608 1.18059 1.20256 0.79861 0.85324 0.86402 1.90778 1.56380 1.22129 1.71665 1.21903 0.97678 0.89053 0.94668 1.46257 1.05778 1.19925 1.33591 1.78561 1.21322 0.96283 1.10386 1.74757 0.96315 1.21400 1.20314 1.21577 0.96780 0.95532 1.02641 1.21782 0.84675 1.01730 1.05467 1.20244 0.92065 0.97181 0.99431 1.21566 0.94849 0.96591 1.02089 1.21652 0.99776 0.95102 0.99365 1.19917 0.86736 1.00551 0.99698 1.23054 1.06149 0.95425 0.95431 1.22918 0.96744 1.03456 0.96862 1.22857 0.93497 1.01819 1.02979 0.93451 0.77975 0.91429 0.91569 0.74990 0.84578 0.84717 0.89337 0.89964 0.90408 0.91243 0.91268 0.90674 0.89989 0.90198 0.89607 0.86338 0.91248 0.90952 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.64 13.06 55.49 0.72 -23.91 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 20.31 29.55 -169.99 -5.02 15.28 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.24 -5.60 8.15 -15.06 -0.12 -5.72 16 8 H 0.07 1.69 6.91 -52.49 -0.36 1.32 16 9 N -0.72 -14.60 3.08 -53.43 -0.16 -14.76 16 10 C 0.19 3.23 2.86 -67.93 -0.19 3.04 16 11 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 12 C 0.12 1.85 5.22 -4.05 -0.02 1.83 16 13 N -0.70 -9.92 5.39 -60.30 -0.32 -10.25 16 14 C 0.50 7.31 7.90 -10.98 -0.09 7.22 16 15 O -0.53 -10.01 16.43 5.56 0.09 -9.92 16 16 C 0.09 1.06 6.72 -5.19 -0.03 1.03 16 17 N -0.26 -3.80 2.82 -58.43 -0.16 -3.96 16 18 N -0.09 -1.48 13.19 60.35 0.80 -0.69 16 19 N -0.26 -4.42 12.40 33.16 0.41 -4.01 16 20 C -0.03 -0.36 7.11 -83.12 -0.59 -0.95 16 21 C 0.00 -0.04 6.76 -82.50 -0.56 -0.59 16 22 C -0.05 -0.50 5.97 -27.74 -0.17 -0.67 16 23 C -0.11 -0.88 5.90 -26.45 -0.16 -1.04 16 24 C -0.12 -0.96 5.90 -26.45 -0.16 -1.12 16 25 C -0.03 -0.29 6.30 -27.71 -0.17 -0.47 16 26 C -0.18 -2.93 5.71 -90.62 -0.52 -3.45 16 27 C -0.16 -2.89 9.74 -26.69 -0.26 -3.15 16 28 C -0.17 -2.95 9.87 -26.69 -0.26 -3.22 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.39 8.62 7.80 -40.82 -0.32 8.30 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.41 5.60 8.14 -40.82 -0.33 5.27 16 34 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.14 1.17 7.71 -51.93 -0.40 0.77 16 36 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.08 0.71 7.87 -51.93 -0.41 0.31 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 45 H 0.12 2.52 6.68 -51.93 -0.35 2.17 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.10 1.95 6.22 -51.93 -0.32 1.63 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -31.07 390.33 -8.71 -39.78 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.54 Total: 14.08 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.40 Total: -7.52 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 1.28 Total: -57.58 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.07 -8.71 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713118933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.820 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds