Wall clock time and date at job start Tue Mar 31 2020 17:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99753 * 2 1 4 4 H 1.48499 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47054 * 300.00561 * 3 2 1 6 6 H 1.48497 * 109.47099 * 60.00300 * 3 2 1 7 7 C 1.38811 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00240 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46713 * 325.00127 * 10 9 7 12 12 C 1.52997 * 109.47384 * 205.00033 * 10 9 7 13 13 N 1.46496 * 109.47194 * 54.99585 * 12 10 9 14 14 C 1.34777 * 120.00271 * 179.97438 * 13 12 10 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.46505 * 109.47064 * 180.02562 * 16 14 13 18 18 N 1.29097 * 126.00602 * 269.69229 * 17 16 14 19 19 N 1.29023 * 110.25825 * 179.77566 * 18 17 16 20 20 C 1.32907 * 108.63382 * 0.41503 * 19 18 17 21 21 C 1.34397 * 126.00190 * 90.00110 * 17 16 14 22 22 C 1.50527 * 129.25890 * 0.21015 * 21 17 16 23 23 C 1.53437 * 108.32805 * 163.46004 * 22 21 17 24 24 C 1.53110 * 109.54995 * 49.71918 * 23 22 21 25 25 C 1.50598 * 129.16673 * 179.85760 * 20 19 18 26 26 C 1.53002 * 109.47240 * 84.99672 * 10 9 7 27 27 C 1.53003 * 117.49668 * 8.75211 * 26 10 9 28 28 C 1.52998 * 117.49869 * 300.08963 * 26 10 9 29 29 H 0.96994 * 120.00313 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00054 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47045 * 294.99712 * 12 10 9 32 32 H 1.09001 * 109.47375 * 174.99637 * 12 10 9 33 33 H 0.97005 * 120.00266 * 0.02562 * 13 12 10 34 34 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 35 35 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 36 36 H 1.09007 * 109.69705 * 283.16850 * 22 21 17 37 37 H 1.08995 * 109.69732 * 43.75053 * 22 21 17 38 38 H 1.08995 * 109.45932 * 169.74057 * 23 22 21 39 39 H 1.08991 * 109.45741 * 289.71349 * 23 22 21 40 40 H 1.08999 * 109.45563 * 49.96709 * 24 23 22 41 41 H 1.08998 * 109.45037 * 169.90897 * 24 23 22 42 42 H 1.09003 * 109.68948 * 43.76784 * 25 20 19 43 43 H 1.08999 * 109.72960 * 283.20244 * 25 20 19 44 44 H 1.09001 * 115.54716 * 154.41853 * 26 10 9 45 45 H 1.08995 * 117.50097 * 359.97438 * 27 26 10 46 46 H 1.08993 * 117.49530 * 145.02108 * 27 26 10 47 47 H 1.09000 * 117.49553 * 214.97676 * 28 26 10 48 48 H 1.09000 * 117.50155 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5900 12 6 1.1811 -4.7521 -0.6101 13 7 0.7344 -4.3355 -1.9417 14 6 -0.0546 -5.1477 -2.6726 15 8 -0.3951 -6.2234 -2.2278 16 6 -0.5136 -4.7193 -4.0426 17 7 -1.3536 -5.7682 -4.6263 18 7 -0.9430 -6.7513 -5.3554 19 7 -1.9380 -7.4955 -5.7032 20 6 -3.0520 -6.9812 -5.1923 21 6 -2.6877 -5.8726 -4.5017 22 6 -3.6484 -4.9786 -3.7643 23 6 -5.0679 -5.2812 -4.2620 24 6 -5.3120 -6.7923 -4.2267 25 6 -4.4697 -7.4746 -5.3126 26 6 2.4222 -4.0355 1.4365 27 6 1.8135 -3.1985 2.5634 28 6 3.2997 -3.0601 2.2235 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 0.3136 -4.9201 0.0280 32 1 1.7560 -5.6745 -0.6919 33 1 1.0071 -3.4753 -2.2977 34 1 0.3542 -4.5513 -4.6805 35 1 -1.0887 -3.7970 -3.9612 36 1 -3.5849 -5.1746 -2.6939 37 1 -3.4045 -3.9349 -3.9621 38 1 -5.7923 -4.7814 -3.6190 39 1 -5.1791 -4.9195 -5.2841 40 1 -5.0293 -7.1830 -3.2492 41 1 -6.3680 -6.9937 -4.4064 42 1 -4.4956 -8.5552 -5.1725 43 1 -4.8649 -7.2222 -6.2966 44 1 2.5635 -5.1006 1.6204 45 1 1.1541 -2.3778 2.2811 46 1 1.5548 -3.7129 3.4889 47 1 4.0180 -3.4834 2.9256 48 1 3.6173 -2.1483 1.7177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713118933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:30 Heat of formation + Delta-G solvation = 71.273131 kcal Electronic energy + Delta-G solvation = -28902.330498 eV Core-core repulsion = 24994.404723 eV Total energy + Delta-G solvation = -3907.925775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.45441 -40.91396 -39.19311 -37.95989 -36.10913 -35.79234 -35.09255 -32.74494 -31.59228 -31.11452 -30.38901 -28.90064 -25.61745 -25.10210 -24.39182 -23.61779 -23.07232 -22.60146 -21.55372 -20.60480 -20.52173 -19.33018 -18.68132 -18.39565 -17.16949 -16.96076 -16.68207 -16.43586 -16.31454 -15.87879 -15.44640 -15.30769 -14.90887 -14.82937 -14.79042 -14.68203 -14.45655 -14.39702 -13.88345 -13.43608 -13.06282 -12.94293 -12.88500 -12.66470 -12.59801 -12.56961 -12.25905 -12.11315 -11.98097 -11.92010 -11.82620 -11.60131 -11.51294 -11.34104 -11.04391 -10.97056 -10.74866 -10.62199 -10.16707 -9.83024 -8.98362 -7.87617 -5.14517 0.45728 1.17883 1.35635 1.49456 1.50216 1.54466 1.59489 2.14406 2.59453 3.12409 3.17439 3.45530 3.50138 3.54557 3.71401 3.86534 3.89685 3.91027 3.96898 4.02136 4.09770 4.26102 4.33332 4.43273 4.47319 4.55572 4.56232 4.57522 4.60971 4.63906 4.90693 4.91695 4.96774 5.01224 5.09123 5.17747 5.19787 5.20346 5.21859 5.33909 5.37394 5.45315 5.47595 5.55002 5.67682 5.68617 6.32951 6.39464 7.02266 7.42579 7.44292 8.11083 8.37702 9.34496 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.002817 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.468957 B = 9935.762150 C =10760.682937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.305 1.305 7 C -0.217 4.217 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.195 3.805 11 H 0.063 0.937 12 C 0.130 3.870 13 N -0.696 5.696 14 C 0.502 3.498 15 O -0.577 6.577 16 C 0.092 3.908 17 N -0.266 5.266 18 N -0.125 5.125 19 N -0.296 5.296 20 C -0.038 4.038 21 C -0.006 4.006 22 C -0.051 4.051 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.031 4.031 26 C -0.170 4.170 27 C -0.172 4.172 28 C -0.171 4.171 29 H 0.247 0.753 30 H 0.376 0.624 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.418 0.582 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -8.465 -7.019 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.253 4.253 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.233 1.233 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.081 0.919 12 C 0.005 3.995 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.457 6.457 16 C -0.033 4.033 17 N -0.058 5.058 18 N -0.102 5.102 19 N -0.160 5.160 20 C -0.179 4.179 21 C -0.140 4.140 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.070 4.070 26 C -0.191 4.191 27 C -0.210 4.210 28 C -0.208 4.208 29 H 0.056 0.944 30 H 0.209 0.791 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.256 0.744 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.117 0.883 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.848 -9.775 -7.371 13.568 hybrid contribution -0.149 1.977 0.740 2.116 sum -5.997 -7.798 -6.632 11.864 Atomic orbital electron populations 1.69764 1.06054 1.25451 1.59795 1.25205 0.95942 0.99833 1.04343 0.85402 0.78475 0.81686 0.76120 1.19554 1.22523 1.23339 1.19403 0.91060 0.84482 1.39893 0.90744 1.42505 1.05340 1.00082 1.87930 1.20098 0.94007 0.84773 0.92583 0.91889 1.21478 0.98229 0.97400 0.82351 1.45768 1.49689 1.21684 1.17591 1.20698 0.78923 0.84454 0.87228 1.90762 1.57993 1.24029 1.72905 1.22174 0.99054 0.89188 0.92849 1.46481 1.06503 1.19742 1.33032 1.78469 1.21958 0.97541 1.12189 1.74692 0.97398 1.22360 1.21595 1.22321 0.97777 0.95652 1.02125 1.22410 0.84727 1.01983 1.04928 1.20431 0.92747 0.97427 0.98426 1.21606 0.93596 0.96569 1.02966 1.21661 1.00903 0.95020 0.97889 1.20118 0.84829 1.00708 1.01361 1.23067 1.05117 0.96649 0.94314 1.22778 0.96761 1.03068 0.98352 1.22846 0.93407 1.01189 1.03322 0.94365 0.79106 0.92736 0.90565 0.74416 0.82046 0.81587 0.90298 0.88335 0.88446 0.90343 0.92576 0.87909 0.90038 0.88560 0.87051 0.90140 0.89330 0.88293 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -51.47 13.06 21.65 0.28 -51.19 16 2 C -0.06 -3.00 5.50 84.86 0.47 -2.53 16 3 Si 0.95 41.82 29.55 68.60 2.03 43.84 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.30 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.31 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.22 -9.93 8.15 84.03 0.69 -9.24 16 8 H 0.07 3.37 6.91 -2.91 -0.02 3.35 16 9 N -0.72 -28.77 3.08 -322.95 -0.99 -29.76 16 10 C 0.19 6.24 2.86 44.99 0.13 6.37 16 11 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 12 C 0.13 3.82 5.22 86.38 0.45 4.27 16 13 N -0.70 -18.82 5.39 -463.07 -2.49 -21.32 16 14 C 0.50 14.29 7.90 87.66 0.69 14.98 16 15 O -0.58 -21.67 16.43 -3.02 -0.05 -21.72 16 16 C 0.09 1.97 6.72 85.63 0.58 2.54 16 17 N -0.27 -7.50 2.82 -338.76 -0.95 -8.46 16 18 N -0.12 -4.25 13.19 37.02 0.49 -3.77 16 19 N -0.30 -10.14 12.40 -48.99 -0.61 -10.75 16 20 C -0.04 -1.06 7.11 41.75 0.30 -0.76 16 21 C -0.01 -0.16 6.76 41.50 0.28 0.13 16 22 C -0.05 -0.95 5.97 29.94 0.18 -0.77 16 23 C -0.11 -1.43 5.90 30.78 0.18 -1.25 16 24 C -0.12 -1.62 5.90 30.77 0.18 -1.44 16 25 C -0.03 -0.57 6.30 29.96 0.19 -0.39 16 26 C -0.17 -5.20 5.71 -10.79 -0.06 -5.26 16 27 C -0.17 -5.90 9.74 30.62 0.30 -5.60 16 28 C -0.17 -5.42 9.87 30.62 0.30 -5.12 16 29 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 30 H 0.38 16.79 7.80 -92.71 -0.72 16.07 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.42 10.70 8.14 -92.70 -0.75 9.95 16 34 H 0.16 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.17 2.49 7.71 -2.39 -0.02 2.47 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.11 2.91 8.11 -2.39 -0.02 2.89 16 45 H 0.08 3.44 6.68 -2.39 -0.02 3.42 16 46 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.08 2.94 6.22 -2.39 -0.01 2.93 16 Total: -1.00 -68.85 390.33 2.06 -66.79 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -0.49 Total: 40.39 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 4.85 Total: -4.06 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -4.28 Total: -125.24 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -68.85 2.06 -66.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713118933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.067 kcal (2) G-P(sol) polarization free energy of solvation -68.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds