Wall clock time and date at job start Tue Mar 31 2020 17:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.46505 * 109.47064 * 180.02562 * 16 14 13 18 18 N 1.29106 * 126.00502 * 269.69042 * 17 16 14 19 19 N 1.29024 * 110.25770 * 179.77472 * 18 17 16 20 20 C 1.32911 * 108.63411 * 0.41741 * 19 18 17 21 21 C 1.34395 * 126.00753 * 89.99814 * 17 16 14 22 22 C 1.50534 * 129.25443 * 0.21033 * 21 17 16 23 23 C 1.53435 * 108.32493 * 163.45946 * 22 21 17 24 24 C 1.53114 * 109.55194 * 49.71809 * 23 22 21 25 25 C 1.50594 * 129.16308 * 179.86241 * 20 19 18 26 26 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 27 27 C 1.52995 * 117.49555 * 128.74822 * 26 10 9 28 28 C 1.52995 * 117.49792 * 60.09061 * 26 10 9 29 29 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 32 32 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 34 34 H 1.09002 * 109.47152 * 300.00160 * 16 14 13 35 35 H 1.09001 * 109.46980 * 60.00059 * 16 14 13 36 36 H 1.08992 * 109.69405 * 283.17036 * 22 21 17 37 37 H 1.09005 * 109.69277 * 43.75251 * 22 21 17 38 38 H 1.08997 * 109.45584 * 169.74250 * 23 22 21 39 39 H 1.09006 * 109.45678 * 289.70969 * 23 22 21 40 40 H 1.08998 * 109.45155 * 49.97195 * 24 23 22 41 41 H 1.08998 * 109.45185 * 169.90439 * 24 23 22 42 42 H 1.08996 * 109.69190 * 43.75567 * 25 20 19 43 43 H 1.08999 * 109.72155 * 283.19491 * 25 20 19 44 44 H 1.08997 * 115.54853 * 274.41548 * 26 10 9 45 45 H 1.08998 * 117.49984 * 359.97438 * 27 26 10 46 46 H 1.09006 * 117.49830 * 145.02021 * 27 26 10 47 47 H 1.09000 * 117.49832 * 214.98051 * 28 26 10 48 48 H 1.09001 * 117.49910 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2234 2.2267 16 6 -0.5143 -4.7190 4.0412 17 7 -1.3532 -5.7684 4.6254 18 7 -2.6353 -5.8673 4.5101 19 7 -3.0616 -6.9086 5.1416 20 6 -2.0234 -7.5186 5.7044 21 6 -0.9240 -6.7941 5.3804 22 6 0.4752 -7.1330 5.8202 23 6 0.3871 -8.1313 6.9821 24 6 -0.5507 -9.2800 6.6008 25 6 -1.9956 -8.7673 6.5457 26 6 2.4221 -4.0355 -1.4376 27 6 3.8823 -4.3890 -1.7268 28 6 3.3029 -3.0621 -2.2233 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 0.3135 -4.9201 -0.0291 32 1 1.7560 -5.6746 0.6908 33 1 1.0066 -3.4751 2.2963 34 1 0.3531 -4.5502 4.6794 35 1 -1.0898 -3.7969 3.9590 36 1 1.0223 -7.5817 4.9912 37 1 0.9855 -6.2284 6.1510 38 1 1.3795 -8.5283 7.1956 39 1 0.0003 -7.6255 7.8669 40 1 -0.2668 -9.6713 5.6239 41 1 -0.4749 -10.0727 7.3451 42 1 -2.6377 -9.5259 6.0983 43 1 -2.3433 -8.5396 7.5534 44 1 1.6542 -4.5774 -1.9897 45 1 4.5838 -4.3513 -0.8934 46 1 4.0751 -5.1632 -2.4696 47 1 3.1147 -2.9637 -3.2924 48 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713118934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:34 Heat of formation + Delta-G solvation = 88.615830 kcal Electronic energy + Delta-G solvation = -28674.352360 eV Core-core repulsion = 24767.178620 eV Total energy + Delta-G solvation = -3907.173739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41072 -39.67098 -37.69178 -37.25132 -35.00849 -34.67276 -33.54424 -31.29114 -30.72545 -30.21867 -29.07906 -27.54621 -24.32389 -23.93357 -22.86137 -22.71784 -21.80225 -21.51213 -20.44376 -19.77948 -19.62410 -17.91364 -17.42417 -17.15078 -16.05179 -15.67127 -15.51891 -15.16346 -15.00618 -14.55522 -14.24491 -14.20033 -14.00083 -13.96298 -13.83703 -13.56156 -13.27098 -13.08761 -12.74658 -12.36613 -12.11103 -11.58444 -11.48239 -11.38587 -11.28117 -11.25618 -11.22443 -10.96812 -10.95426 -10.83145 -10.53641 -10.46187 -10.18065 -10.03461 -9.79493 -9.56753 -9.40080 -9.09275 -8.91458 -8.83581 -7.16407 -5.91733 -3.22324 1.51641 2.14126 2.50600 2.57501 3.26579 3.32215 3.38230 3.41150 4.01900 4.30610 4.31457 4.46925 4.50231 4.53793 4.62051 4.67880 4.78049 4.79390 5.09739 5.11871 5.22097 5.25471 5.34716 5.35776 5.40731 5.50705 5.53759 5.61453 5.62527 5.69943 5.77042 5.86190 5.87012 5.94327 5.95754 6.00655 6.07608 6.22316 6.24201 6.41886 6.48063 6.49874 6.64089 6.69468 6.87886 7.55559 7.56951 8.18421 8.24764 8.55506 9.37101 9.89895 10.25894 11.29793 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002667 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.952700 B =10496.822008 C =11453.456225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.194 3.806 11 H 0.056 0.944 12 C 0.120 3.880 13 N -0.702 5.702 14 C 0.499 3.501 15 O -0.533 6.533 16 C 0.092 3.908 17 N -0.264 5.264 18 N -0.081 5.081 19 N -0.263 5.263 20 C -0.025 4.025 21 C -0.009 4.009 22 C -0.047 4.047 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.030 4.030 26 C -0.161 4.161 27 C -0.196 4.196 28 C -0.155 4.155 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.413 0.587 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -14.793 12.774 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.083 3.917 11 H 0.074 0.926 12 C -0.004 4.004 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.409 6.409 16 C -0.033 4.033 17 N -0.055 5.055 18 N -0.059 5.059 19 N -0.128 5.128 20 C -0.164 4.164 21 C -0.143 4.143 22 C -0.087 4.087 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.069 4.069 26 C -0.182 4.182 27 C -0.234 4.234 28 C -0.192 4.192 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.634 -14.728 11.824 19.233 hybrid contribution 1.198 1.285 0.058 1.758 sum 4.832 -13.443 11.882 18.581 Atomic orbital electron populations 1.69664 1.05063 1.25755 1.56969 1.24738 0.95441 0.97639 1.02663 0.86195 0.78794 0.84324 0.77280 1.20566 1.21853 1.21874 1.19178 0.90842 0.83748 1.43343 0.91048 1.42481 1.05842 0.99408 1.88129 1.20048 0.94228 0.86018 0.91366 0.92581 1.21671 0.98831 0.97742 0.82186 1.45842 1.49986 1.21603 1.18051 1.20254 0.79601 0.85374 0.86600 1.90778 1.56018 1.22413 1.71717 1.21906 0.96289 0.90537 0.94595 1.46282 1.06848 1.19319 1.33018 1.78636 0.91232 1.16306 1.19742 1.74789 1.26264 1.02330 1.09394 1.21582 0.88918 1.00832 1.05104 1.21735 0.99274 0.92315 1.00928 1.20210 0.89160 1.00165 0.99129 1.21569 1.00400 0.95911 0.97221 1.21646 0.93925 0.97772 1.02523 1.19914 0.97524 0.91627 0.97882 1.23023 0.92241 1.03232 0.99748 1.22964 0.97160 0.99871 1.03376 1.22784 1.03246 0.94037 0.99161 0.93404 0.78025 0.91514 0.91396 0.74975 0.85089 0.84143 0.89531 0.90219 0.90540 0.91204 0.91288 0.90676 0.89935 0.90175 0.89130 0.89530 0.90053 0.90169 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.79 13.06 55.49 0.72 -25.07 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -5.77 8.63 -15.06 -0.13 -5.90 16 8 H 0.07 1.68 6.91 -52.48 -0.36 1.32 16 9 N -0.72 -15.31 4.54 -53.42 -0.24 -15.55 16 10 C 0.19 3.29 2.70 -67.92 -0.18 3.11 16 11 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 12 C 0.12 1.85 5.22 -4.04 -0.02 1.83 16 13 N -0.70 -9.99 5.39 -60.29 -0.32 -10.32 16 14 C 0.50 7.33 7.90 -10.98 -0.09 7.24 16 15 O -0.53 -10.01 16.43 5.56 0.09 -9.92 16 16 C 0.09 1.06 6.72 -5.19 -0.03 1.02 16 17 N -0.26 -3.78 2.82 -58.43 -0.16 -3.94 16 18 N -0.08 -1.42 13.19 60.35 0.80 -0.63 16 19 N -0.26 -4.49 12.40 33.16 0.41 -4.07 16 20 C -0.02 -0.34 7.11 -83.12 -0.59 -0.93 16 21 C -0.01 -0.11 6.76 -82.50 -0.56 -0.67 16 22 C -0.05 -0.40 5.97 -27.74 -0.17 -0.57 16 23 C -0.11 -0.73 5.90 -26.45 -0.16 -0.89 16 24 C -0.12 -0.85 5.90 -26.45 -0.16 -1.01 16 25 C -0.03 -0.28 6.30 -27.72 -0.17 -0.46 16 26 C -0.16 -2.63 5.36 -90.62 -0.49 -3.12 16 27 C -0.20 -2.78 10.18 -26.70 -0.27 -3.06 16 28 C -0.16 -2.61 9.78 -26.70 -0.26 -2.87 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.14 7.80 -40.82 -0.32 8.82 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.41 5.66 8.14 -40.82 -0.33 5.33 16 34 H 0.13 0.96 7.71 -51.93 -0.40 0.55 16 35 H 0.14 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 40 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 45 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.11 1.98 6.23 -51.93 -0.32 1.66 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -32.82 393.24 -8.78 -41.60 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.60 Total: 12.86 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.37 Total: -6.58 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 1.20 Total: -59.59 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.82 -8.78 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713118934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.212 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds