Wall clock time and date at job start Tue Mar 31 2020 17:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.46505 * 109.47064 * 180.02562 * 16 14 13 18 18 N 1.29106 * 126.00502 * 269.69042 * 17 16 14 19 19 N 1.29024 * 110.25770 * 179.77472 * 18 17 16 20 20 C 1.32911 * 108.63411 * 0.41741 * 19 18 17 21 21 C 1.34395 * 126.00753 * 89.99814 * 17 16 14 22 22 C 1.50534 * 129.25443 * 0.21033 * 21 17 16 23 23 C 1.53435 * 108.32493 * 163.45946 * 22 21 17 24 24 C 1.53114 * 109.55194 * 49.71809 * 23 22 21 25 25 C 1.50594 * 129.16308 * 179.86241 * 20 19 18 26 26 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 27 27 C 1.52995 * 117.49555 * 128.74822 * 26 10 9 28 28 C 1.52995 * 117.49792 * 60.09061 * 26 10 9 29 29 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 32 32 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 34 34 H 1.09002 * 109.47152 * 300.00160 * 16 14 13 35 35 H 1.09001 * 109.46980 * 60.00059 * 16 14 13 36 36 H 1.08992 * 109.69405 * 283.17036 * 22 21 17 37 37 H 1.09005 * 109.69277 * 43.75251 * 22 21 17 38 38 H 1.08997 * 109.45584 * 169.74250 * 23 22 21 39 39 H 1.09006 * 109.45678 * 289.70969 * 23 22 21 40 40 H 1.08998 * 109.45155 * 49.97195 * 24 23 22 41 41 H 1.08998 * 109.45185 * 169.90439 * 24 23 22 42 42 H 1.08996 * 109.69190 * 43.75567 * 25 20 19 43 43 H 1.08999 * 109.72155 * 283.19491 * 25 20 19 44 44 H 1.08997 * 115.54853 * 274.41548 * 26 10 9 45 45 H 1.08998 * 117.49984 * 359.97438 * 27 26 10 46 46 H 1.09006 * 117.49830 * 145.02021 * 27 26 10 47 47 H 1.09000 * 117.49832 * 214.98051 * 28 26 10 48 48 H 1.09001 * 117.49910 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2234 2.2267 16 6 -0.5143 -4.7190 4.0412 17 7 -1.3532 -5.7684 4.6254 18 7 -2.6353 -5.8673 4.5101 19 7 -3.0616 -6.9086 5.1416 20 6 -2.0234 -7.5186 5.7044 21 6 -0.9240 -6.7941 5.3804 22 6 0.4752 -7.1330 5.8202 23 6 0.3871 -8.1313 6.9821 24 6 -0.5507 -9.2800 6.6008 25 6 -1.9956 -8.7673 6.5457 26 6 2.4221 -4.0355 -1.4376 27 6 3.8823 -4.3890 -1.7268 28 6 3.3029 -3.0621 -2.2233 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 0.3135 -4.9201 -0.0291 32 1 1.7560 -5.6746 0.6908 33 1 1.0066 -3.4751 2.2963 34 1 0.3531 -4.5502 4.6794 35 1 -1.0898 -3.7969 3.9590 36 1 1.0223 -7.5817 4.9912 37 1 0.9855 -6.2284 6.1510 38 1 1.3795 -8.5283 7.1956 39 1 0.0003 -7.6255 7.8669 40 1 -0.2668 -9.6713 5.6239 41 1 -0.4749 -10.0727 7.3451 42 1 -2.6377 -9.5259 6.0983 43 1 -2.3433 -8.5396 7.5534 44 1 1.6542 -4.5774 -1.9897 45 1 4.5838 -4.3513 -0.8934 46 1 4.0751 -5.1632 -2.4696 47 1 3.1147 -2.9637 -3.2924 48 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713118934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:33 Heat of formation + Delta-G solvation = 66.408355 kcal Electronic energy + Delta-G solvation = -28675.315348 eV Core-core repulsion = 24767.178620 eV Total energy + Delta-G solvation = -3908.136728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.44782 -40.91127 -39.06180 -37.94191 -36.23724 -35.82220 -35.21751 -32.84342 -31.58651 -31.10265 -30.34999 -28.84549 -25.63780 -25.08604 -24.17599 -23.59661 -23.03021 -22.64195 -21.64798 -20.96689 -20.51654 -19.38629 -18.66062 -18.39430 -17.09969 -16.96716 -16.76731 -16.49025 -16.04468 -15.89741 -15.50371 -15.22644 -14.95121 -14.83630 -14.79853 -14.74271 -14.48334 -14.39036 -13.91283 -13.41115 -13.04083 -12.99456 -12.90880 -12.71521 -12.54579 -12.39718 -12.26047 -12.23304 -11.97324 -11.94920 -11.80415 -11.73286 -11.52031 -11.32368 -11.02121 -11.00536 -10.81927 -10.71865 -10.17760 -9.82484 -9.00343 -7.88494 -5.16294 0.47331 1.18990 1.34769 1.49151 1.51365 1.52504 1.59393 2.14524 2.58140 3.07462 3.18983 3.44673 3.50653 3.56256 3.72280 3.77283 3.90460 3.92500 3.98496 4.04310 4.12133 4.16357 4.33894 4.38979 4.44934 4.53824 4.58253 4.59643 4.62497 4.65530 4.82679 4.90677 4.93220 5.03376 5.10592 5.11852 5.16407 5.21778 5.23739 5.34287 5.38420 5.40702 5.47570 5.48370 5.57172 5.63398 6.30860 6.38921 7.01717 7.39696 7.45970 8.10106 8.34964 9.34225 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002667 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.952700 B =10496.822008 C =11453.456225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.306 1.306 6 H -0.298 1.298 7 C -0.213 4.213 8 H 0.080 0.920 9 N -0.724 5.724 10 C 0.199 3.801 11 H 0.067 0.933 12 C 0.129 3.871 13 N -0.696 5.696 14 C 0.502 3.498 15 O -0.577 6.577 16 C 0.092 3.908 17 N -0.266 5.266 18 N -0.133 5.133 19 N -0.300 5.300 20 C -0.042 4.042 21 C -0.004 4.004 22 C -0.049 4.049 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.032 4.032 26 C -0.176 4.176 27 C -0.160 4.160 28 C -0.175 4.175 29 H 0.246 0.754 30 H 0.372 0.628 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.418 0.582 34 H 0.180 0.820 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -16.115 14.379 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.262 4.262 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.235 1.235 6 H -0.225 1.225 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.363 5.363 10 C 0.090 3.910 11 H 0.085 0.915 12 C 0.005 3.995 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.457 6.457 16 C -0.033 4.033 17 N -0.058 5.058 18 N -0.110 5.110 19 N -0.164 5.164 20 C -0.182 4.182 21 C -0.138 4.138 22 C -0.088 4.088 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.071 4.071 26 C -0.198 4.198 27 C -0.198 4.198 28 C -0.212 4.212 29 H 0.055 0.945 30 H 0.204 0.796 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.256 0.744 34 H 0.198 0.802 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.917 -16.058 13.425 22.044 hybrid contribution 0.269 1.572 -0.475 1.664 sum 7.186 -14.486 12.950 20.717 Atomic orbital electron populations 1.69807 1.06430 1.25491 1.60081 1.25346 0.95981 1.00374 1.04534 0.85306 0.78587 0.81172 0.76078 1.18889 1.23461 1.22529 1.19473 0.91182 0.84392 1.39478 0.90212 1.42608 1.05308 1.00429 1.87999 1.20153 0.94207 0.84473 0.92121 0.91547 1.21507 0.97868 0.97782 0.82371 1.45765 1.49786 1.21656 1.17534 1.20711 0.78596 0.84512 0.87484 1.90761 1.57561 1.24400 1.72956 1.22181 0.97702 0.89940 0.93436 1.46508 1.06321 1.20076 1.32855 1.78548 0.93070 1.17530 1.21851 1.74709 1.28195 1.03029 1.10447 1.22387 0.88546 1.02071 1.05240 1.22527 1.01020 0.91020 0.99263 1.20486 0.86506 1.01954 0.99862 1.21615 1.01643 0.95085 0.96366 1.21664 0.92230 0.98757 1.02831 1.20125 0.99469 0.89797 0.97731 1.22940 0.93951 1.03956 0.98903 1.23037 0.95055 0.98141 1.03533 1.22738 1.04820 0.94449 0.99211 0.94472 0.79601 0.93630 0.89762 0.74415 0.80242 0.83338 0.89650 0.87615 0.87911 0.90554 0.92433 0.87996 0.90372 0.88746 0.89335 0.88152 0.87805 0.89913 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -54.95 13.06 21.65 0.28 -54.67 16 2 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.96 42.78 29.55 68.60 2.03 44.81 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.21 -10.09 8.63 84.03 0.73 -9.36 16 8 H 0.08 3.62 6.91 -2.91 -0.02 3.60 16 9 N -0.72 -30.57 4.54 -322.94 -1.47 -32.04 16 10 C 0.20 6.46 2.70 44.99 0.12 6.58 16 11 H 0.07 2.06 7.84 -2.39 -0.02 2.04 16 12 C 0.13 3.86 5.22 86.38 0.45 4.31 16 13 N -0.70 -19.02 5.39 -463.05 -2.49 -21.51 16 14 C 0.50 14.38 7.90 87.66 0.69 15.07 16 15 O -0.58 -21.78 16.43 -3.02 -0.05 -21.83 16 16 C 0.09 1.98 6.72 85.63 0.58 2.55 16 17 N -0.27 -7.55 2.82 -338.76 -0.95 -8.50 16 18 N -0.13 -4.82 13.19 37.02 0.49 -4.33 16 19 N -0.30 -10.63 12.40 -48.99 -0.61 -11.24 16 20 C -0.04 -1.13 7.11 41.75 0.30 -0.84 16 21 C 0.00 -0.09 6.76 41.50 0.28 0.19 16 22 C -0.05 -0.69 5.97 29.94 0.18 -0.51 16 23 C -0.11 -1.02 5.90 30.78 0.18 -0.84 16 24 C -0.12 -1.35 5.90 30.77 0.18 -1.17 16 25 C -0.03 -0.57 6.30 29.96 0.19 -0.38 16 26 C -0.18 -5.47 5.36 -10.79 -0.06 -5.53 16 27 C -0.16 -4.01 10.18 30.61 0.31 -3.70 16 28 C -0.17 -5.60 9.78 30.61 0.30 -5.30 16 29 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.37 17.84 7.80 -92.71 -0.72 17.12 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.42 10.82 8.14 -92.71 -0.75 10.06 16 34 H 0.18 2.00 7.71 -2.39 -0.02 1.99 16 35 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 0.94 7.87 -2.38 -0.02 0.93 16 38 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.66 8.12 -2.38 -0.02 0.64 16 40 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 45 H 0.10 2.28 8.05 -2.39 -0.02 2.26 16 46 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 47 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.08 3.05 6.23 -2.39 -0.01 3.03 16 Total: -1.00 -74.64 393.24 1.63 -73.01 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.49 Total: 38.39 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.89 Total: -2.09 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -4.75 Total: -132.29 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.64 1.63 -73.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713118934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.419 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds