Wall clock time and date at job start Tue Mar 31 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48492 * 109.47542 * 270.00388 * 3 2 1 5 5 H 1.48503 * 109.46783 * 30.00621 * 3 2 1 6 6 H 1.48507 * 109.47121 * 150.00175 * 3 2 1 7 7 C 1.38817 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99878 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47010 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.49994 * 304.93660 * 11 10 9 13 13 C 1.53041 * 109.52584 * 184.85864 * 11 10 9 14 14 C 1.53038 * 109.54137 * 178.67007 * 13 11 10 15 15 C 1.52761 * 109.38578 * 61.23538 * 14 13 11 16 16 N 1.46929 * 109.00782 * 305.59323 * 15 14 13 17 17 C 1.34776 * 120.63079 * 233.58282 * 16 15 14 18 18 O 1.21588 * 120.00123 * 183.84518 * 17 16 15 19 19 C 1.47529 * 119.99720 * 3.83718 * 17 16 15 20 20 C 1.36592 * 125.76728 * 173.30276 * 19 17 16 21 21 N 1.34815 * 106.83914 * 179.76225 * 20 19 17 22 22 C 1.46505 * 126.59415 * 180.20654 * 21 20 19 23 23 C 1.53779 * 113.61338 * 12.50229 * 22 21 20 24 24 C 1.53781 * 87.08025 * 220.01526 * 23 22 21 25 25 C 1.53779 * 113.61403 * 275.00095 * 22 21 20 26 26 N 1.40206 * 106.80839 * 0.24621 * 21 20 19 27 27 N 1.28757 * 108.37129 * 359.97438 * 26 21 20 28 28 C 1.46924 * 118.73872 * 53.30858 * 16 15 14 29 29 H 0.96996 * 119.99662 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99923 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47225 * 60.00034 * 10 9 7 32 32 H 1.08991 * 109.47518 * 299.99835 * 10 9 7 33 33 H 1.09006 * 109.45793 * 298.68716 * 13 11 10 34 34 H 1.08998 * 109.46555 * 58.65742 * 13 11 10 35 35 H 1.08995 * 109.49926 * 181.31769 * 14 13 11 36 36 H 1.09005 * 109.49721 * 301.41079 * 14 13 11 37 37 H 1.09002 * 109.51358 * 185.70810 * 15 14 13 38 38 H 1.09000 * 109.42953 * 65.42321 * 15 14 13 39 39 H 1.08004 * 126.58103 * 0.03608 * 20 19 17 40 40 H 1.09003 * 112.84216 * 143.80502 * 22 21 20 41 41 H 1.08995 * 113.61649 * 334.56982 * 23 22 21 42 42 H 1.09001 * 113.61176 * 105.47164 * 23 22 21 43 43 H 1.08997 * 113.61353 * 270.88506 * 24 23 22 44 44 H 1.08997 * 113.69203 * 139.99437 * 24 23 22 45 45 H 1.08997 * 113.61697 * 254.52812 * 25 22 21 46 46 H 1.09000 * 113.61580 * 25.35601 * 25 22 21 47 47 H 1.09001 * 109.59143 * 66.43223 * 28 16 15 48 48 H 1.09004 * 109.58602 * 186.71598 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.3810 -4.7141 0.8424 13 6 1.8238 -6.1425 0.1202 14 6 0.8278 -7.3039 0.1545 15 6 0.0266 -7.3234 -1.1460 16 7 -0.5898 -6.0051 -1.3481 17 6 -1.9160 -5.8923 -1.5601 18 8 -2.4037 -4.8037 -1.7955 19 6 -2.7759 -7.0899 -1.5068 20 6 -4.1401 -7.0969 -1.5744 21 7 -4.5285 -8.3855 -1.4956 22 6 -5.9047 -8.8866 -1.5304 23 6 -6.9331 -7.8324 -1.9730 24 6 -7.8664 -8.4034 -0.8924 25 6 -6.5996 -8.8744 -0.1586 26 7 -3.3620 -9.1537 -1.3731 27 7 -2.3496 -8.3583 -1.3805 28 6 0.2661 -4.8115 -1.3087 29 1 -0.4849 0.8400 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6853 -3.7150 0.8878 32 1 2.6839 -3.7142 -0.8921 33 1 2.4882 -6.2591 -0.7360 34 1 2.4114 -6.1411 1.0382 35 1 1.3686 -8.2439 0.2642 36 1 0.1473 -7.1749 0.9962 37 1 -0.7510 -8.0846 -1.0832 38 1 0.6931 -7.5467 -1.9791 39 1 -4.7839 -6.2357 -1.6763 40 1 -5.9961 -9.8362 -2.0577 41 1 -6.6178 -6.8070 -1.7804 42 1 -7.2998 -7.9799 -2.9889 43 1 -8.4954 -9.2204 -1.2459 44 1 -8.4270 -7.6415 -0.3507 45 1 -6.6971 -9.8628 0.2904 46 1 -6.1922 -8.1347 0.5307 47 1 0.9524 -4.8258 -2.1553 48 1 -0.3535 -3.9159 -1.3556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713230349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:15 Heat of formation + Delta-G solvation = 106.658058 kcal Electronic energy + Delta-G solvation = -28743.853105 eV Core-core repulsion = 24837.461735 eV Total energy + Delta-G solvation = -3906.391369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55526 -39.88514 -39.20772 -37.41179 -34.86983 -33.55708 -32.65073 -31.58143 -31.09373 -29.59126 -26.81969 -26.48428 -25.55807 -25.33552 -23.10381 -22.96374 -22.61045 -21.22242 -20.32004 -20.12518 -19.30781 -17.89934 -17.00218 -16.56209 -16.45312 -15.95434 -15.87767 -15.05154 -14.82271 -14.66711 -14.43790 -14.10487 -13.75412 -13.48856 -13.41418 -13.24862 -13.23083 -12.89652 -12.81412 -12.52792 -12.42640 -12.24546 -12.12274 -11.71171 -11.49704 -11.21665 -11.09321 -10.92780 -10.75843 -10.69727 -10.52807 -10.37051 -10.19125 -10.12835 -9.95429 -9.63802 -9.47833 -9.43317 -8.78950 -8.33595 -6.81838 -5.65658 -2.94834 0.92644 1.60068 1.72460 3.10713 3.38035 3.50189 3.50715 3.54696 3.56759 3.72416 4.01065 4.02278 4.06062 4.41438 4.64930 4.66824 4.76588 4.89076 4.96796 5.00515 5.06796 5.15534 5.18170 5.23548 5.24768 5.26644 5.32935 5.40746 5.58987 5.60989 5.68529 5.80936 5.98134 6.04405 6.11505 6.12478 6.19174 6.27074 6.32560 6.40203 6.53650 6.64600 6.82940 6.88894 6.99233 7.56986 7.78932 7.79477 8.33267 8.52419 9.63271 10.22026 10.56532 11.56827 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002580 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.702411 B =10850.297249 C =12292.821871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.130 4.130 15 C 0.067 3.933 16 N -0.592 5.592 17 C 0.596 3.404 18 O -0.531 6.531 19 C -0.088 4.088 20 C 0.092 3.908 21 N -0.348 5.348 22 C 0.121 3.879 23 C -0.148 4.148 24 C -0.136 4.136 25 C -0.145 4.145 26 N -0.070 5.070 27 N -0.207 5.207 28 C 0.121 3.879 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.203 0.797 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.455 -24.093 -2.857 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.126 4.126 12 H 0.091 0.909 13 C -0.151 4.151 14 C -0.168 4.168 15 C -0.056 4.056 16 N -0.324 5.324 17 C 0.381 3.619 18 O -0.407 6.407 19 C -0.227 4.227 20 C -0.064 4.064 21 N -0.133 5.133 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.174 4.174 25 C -0.184 4.184 26 N -0.049 5.049 27 N -0.079 5.079 28 C -0.001 4.001 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.080 0.920 39 H 0.220 0.780 40 H 0.152 0.848 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.085 0.915 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.050 -24.827 -2.853 28.669 hybrid contribution -0.170 1.829 -0.067 1.838 sum -14.219 -22.997 -2.920 27.195 Atomic orbital electron populations 1.69678 1.05036 1.25530 1.57636 1.24753 0.95503 0.97632 1.03155 0.86204 0.78594 0.84011 0.77460 1.21776 1.21853 1.20850 1.19217 0.90975 0.84207 1.42671 0.91241 1.42423 1.05957 0.99962 1.89439 1.20637 0.92995 0.85139 0.97980 1.21678 0.97934 0.95189 0.97766 0.90874 1.21548 0.97584 0.93935 1.02083 1.21793 0.98295 0.98740 0.97967 1.22729 1.00051 0.85753 0.97085 1.47944 1.06199 1.08792 1.69430 1.16837 0.81605 0.85913 0.77548 1.90868 1.73746 1.26567 1.49476 1.21566 0.92423 0.92708 1.15975 1.23250 0.96084 0.89059 0.98047 1.50514 1.08755 1.05308 1.48760 1.23465 0.73808 1.00380 1.00383 1.23485 0.94895 0.99045 1.01186 1.22714 0.95987 1.01641 0.97027 1.23451 0.95721 1.03748 0.95464 1.81968 0.85083 1.15938 1.21871 1.74098 1.21228 1.01006 1.11605 1.21774 0.93282 0.87742 0.97300 0.93557 0.78093 0.96066 0.96210 0.91847 0.91745 0.91052 0.91955 0.84396 0.91982 0.77992 0.84843 0.88353 0.89257 0.89015 0.89636 0.89621 0.88868 0.91480 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.40 5.38 -59.91 -0.32 -19.73 16 10 C 0.16 3.36 5.66 -4.04 -0.02 3.34 16 11 C -0.11 -1.86 2.37 -90.50 -0.21 -2.07 16 12 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.11 -1.56 5.17 -26.69 -0.14 -1.70 16 14 C -0.13 -1.60 6.06 -26.83 -0.16 -1.77 16 15 C 0.07 0.89 6.28 -3.93 -0.02 0.87 16 16 N -0.59 -9.57 2.98 -174.26 -0.52 -10.09 16 17 C 0.60 10.12 7.69 -12.47 -0.10 10.02 16 18 O -0.53 -10.76 16.30 5.29 0.09 -10.67 16 19 C -0.09 -1.21 6.77 -83.55 -0.57 -1.78 16 20 C 0.09 0.98 10.49 -16.84 -0.18 0.80 16 21 N -0.35 -3.23 3.83 -53.77 -0.21 -3.43 16 22 C 0.12 0.64 5.06 -67.12 -0.34 0.30 16 23 C -0.15 -0.54 7.44 -25.92 -0.19 -0.74 16 24 C -0.14 -0.38 8.08 -25.91 -0.21 -0.59 16 25 C -0.15 -0.64 7.88 -25.92 -0.20 -0.84 16 26 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 27 N -0.21 -2.75 8.64 32.85 0.28 -2.47 16 28 C 0.12 2.18 5.51 -3.71 -0.02 2.16 16 29 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.38 10.85 6.89 -40.82 -0.28 10.57 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.14 1.82 3.62 -130.05 -0.47 1.35 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.20 1.68 6.78 -52.48 -0.36 1.33 16 40 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.40 6.39 -51.93 -0.33 0.07 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.10 2.26 6.23 -51.93 -0.32 1.93 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -35.42 382.97 -8.64 -44.06 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.65 Total: 6.63 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.61 Total: 0.40 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.79 Total: -64.28 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.42 -8.64 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713230349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.719 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds