Wall clock time and date at job start Tue Mar 31 2020 18:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48492 * 109.47542 * 270.00388 * 3 2 1 5 5 H 1.48503 * 109.46783 * 30.00621 * 3 2 1 6 6 H 1.48507 * 109.47121 * 150.00175 * 3 2 1 7 7 C 1.38817 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99878 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47010 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.49994 * 304.93660 * 11 10 9 13 13 C 1.53041 * 109.52584 * 184.85864 * 11 10 9 14 14 C 1.53038 * 109.54137 * 178.67007 * 13 11 10 15 15 C 1.52761 * 109.38578 * 61.23538 * 14 13 11 16 16 N 1.46929 * 109.00782 * 305.59323 * 15 14 13 17 17 C 1.34776 * 120.63079 * 233.58282 * 16 15 14 18 18 O 1.21588 * 120.00123 * 183.84518 * 17 16 15 19 19 C 1.47529 * 119.99720 * 3.83718 * 17 16 15 20 20 C 1.36592 * 125.76728 * 173.30276 * 19 17 16 21 21 N 1.34815 * 106.83914 * 179.76225 * 20 19 17 22 22 C 1.46505 * 126.59415 * 180.20654 * 21 20 19 23 23 C 1.53779 * 113.61338 * 12.50229 * 22 21 20 24 24 C 1.53781 * 87.08025 * 220.01526 * 23 22 21 25 25 C 1.53779 * 113.61403 * 275.00095 * 22 21 20 26 26 N 1.40206 * 106.80839 * 0.24621 * 21 20 19 27 27 N 1.28757 * 108.37129 * 359.97438 * 26 21 20 28 28 C 1.46924 * 118.73872 * 53.30858 * 16 15 14 29 29 H 0.96996 * 119.99662 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99923 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47225 * 60.00034 * 10 9 7 32 32 H 1.08991 * 109.47518 * 299.99835 * 10 9 7 33 33 H 1.09006 * 109.45793 * 298.68716 * 13 11 10 34 34 H 1.08998 * 109.46555 * 58.65742 * 13 11 10 35 35 H 1.08995 * 109.49926 * 181.31769 * 14 13 11 36 36 H 1.09005 * 109.49721 * 301.41079 * 14 13 11 37 37 H 1.09002 * 109.51358 * 185.70810 * 15 14 13 38 38 H 1.09000 * 109.42953 * 65.42321 * 15 14 13 39 39 H 1.08004 * 126.58103 * 0.03608 * 20 19 17 40 40 H 1.09003 * 112.84216 * 143.80502 * 22 21 20 41 41 H 1.08995 * 113.61649 * 334.56982 * 23 22 21 42 42 H 1.09001 * 113.61176 * 105.47164 * 23 22 21 43 43 H 1.08997 * 113.61353 * 270.88506 * 24 23 22 44 44 H 1.08997 * 113.69203 * 139.99437 * 24 23 22 45 45 H 1.08997 * 113.61697 * 254.52812 * 25 22 21 46 46 H 1.09000 * 113.61580 * 25.35601 * 25 22 21 47 47 H 1.09001 * 109.59143 * 66.43223 * 28 16 15 48 48 H 1.09004 * 109.58602 * 186.71598 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.3810 -4.7141 0.8424 13 6 1.8238 -6.1425 0.1202 14 6 0.8278 -7.3039 0.1545 15 6 0.0266 -7.3234 -1.1460 16 7 -0.5898 -6.0051 -1.3481 17 6 -1.9160 -5.8923 -1.5601 18 8 -2.4037 -4.8037 -1.7955 19 6 -2.7759 -7.0899 -1.5068 20 6 -4.1401 -7.0969 -1.5744 21 7 -4.5285 -8.3855 -1.4956 22 6 -5.9047 -8.8866 -1.5304 23 6 -6.9331 -7.8324 -1.9730 24 6 -7.8664 -8.4034 -0.8924 25 6 -6.5996 -8.8744 -0.1586 26 7 -3.3620 -9.1537 -1.3731 27 7 -2.3496 -8.3583 -1.3805 28 6 0.2661 -4.8115 -1.3087 29 1 -0.4849 0.8400 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6853 -3.7150 0.8878 32 1 2.6839 -3.7142 -0.8921 33 1 2.4882 -6.2591 -0.7360 34 1 2.4114 -6.1411 1.0382 35 1 1.3686 -8.2439 0.2642 36 1 0.1473 -7.1749 0.9962 37 1 -0.7510 -8.0846 -1.0832 38 1 0.6931 -7.5467 -1.9791 39 1 -4.7839 -6.2357 -1.6763 40 1 -5.9961 -9.8362 -2.0577 41 1 -6.6178 -6.8070 -1.7804 42 1 -7.2998 -7.9799 -2.9889 43 1 -8.4954 -9.2204 -1.2459 44 1 -8.4270 -7.6415 -0.3507 45 1 -6.6971 -9.8628 0.2904 46 1 -6.1922 -8.1347 0.5307 47 1 0.9524 -4.8258 -2.1553 48 1 -0.3535 -3.9159 -1.3556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713230349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:14 Heat of formation + Delta-G solvation = 82.978019 kcal Electronic energy + Delta-G solvation = -28744.879948 eV Core-core repulsion = 24837.461735 eV Total energy + Delta-G solvation = -3907.418213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.45430 -41.07594 -39.74633 -38.80586 -36.62522 -34.71962 -33.98406 -33.08643 -32.20424 -31.28443 -27.76652 -26.95659 -26.81904 -26.60563 -24.85055 -24.03507 -23.41189 -22.61426 -21.61077 -20.68552 -20.37709 -19.18624 -18.72476 -17.63567 -17.22604 -17.14301 -16.69266 -16.54890 -16.10266 -15.91609 -15.72627 -15.32209 -15.28686 -15.05991 -14.40395 -14.21646 -14.18294 -13.96988 -13.82042 -13.68824 -13.50894 -13.28559 -13.16268 -13.01814 -12.79058 -12.54463 -12.24651 -12.14686 -11.96169 -11.91862 -11.88165 -11.71891 -11.55373 -11.39730 -11.31964 -11.16232 -10.94322 -10.73393 -10.42145 -9.63799 -8.99364 -7.92658 -5.23025 0.05739 0.51451 0.99524 1.46458 1.49666 1.57927 1.88584 2.15292 2.56954 2.97350 3.08197 3.37413 3.39990 3.49479 3.70102 3.73826 3.75188 3.85184 3.90306 3.98314 4.09755 4.11915 4.17551 4.29233 4.37758 4.50444 4.57500 4.62318 4.71275 4.76871 4.79346 4.82725 4.88836 4.92811 4.93557 5.04757 5.05274 5.11804 5.18343 5.25956 5.26542 5.36639 5.47988 5.48333 5.51938 5.67105 6.28016 6.32225 6.79185 7.06157 7.33491 8.09606 8.32476 9.30940 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002580 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.702411 B =10850.297249 C =12292.821871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.748 5.748 10 C 0.159 3.841 11 C -0.093 4.093 12 H 0.052 0.948 13 C -0.106 4.106 14 C -0.122 4.122 15 C 0.064 3.936 16 N -0.592 5.592 17 C 0.590 3.410 18 O -0.577 6.577 19 C -0.113 4.113 20 C 0.105 3.895 21 N -0.332 5.332 22 C 0.106 3.894 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.146 4.146 26 N -0.080 5.080 27 N -0.215 5.215 28 C 0.128 3.872 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.145 0.855 38 H 0.076 0.924 39 H 0.223 0.777 40 H 0.152 0.848 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.326 -26.238 -2.925 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.033 3.967 11 C -0.113 4.113 12 H 0.071 0.929 13 C -0.144 4.144 14 C -0.161 4.161 15 C -0.058 4.058 16 N -0.323 5.323 17 C 0.377 3.623 18 O -0.457 6.457 19 C -0.252 4.252 20 C -0.053 4.053 21 N -0.116 5.116 22 C 0.007 3.993 23 C -0.185 4.185 24 C -0.162 4.162 25 C -0.185 4.185 26 N -0.058 5.058 27 N -0.087 5.087 28 C 0.005 3.995 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.239 0.761 40 H 0.170 0.830 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.881 -27.059 -2.911 30.550 hybrid contribution -0.286 2.377 -0.051 2.395 sum -14.167 -24.682 -2.962 28.612 Atomic orbital electron populations 1.69868 1.06820 1.26021 1.59496 1.25664 0.96397 1.01401 1.03745 0.85079 0.77681 0.79182 0.77439 1.21382 1.22236 1.19128 1.19679 0.91588 0.85296 1.41172 0.90293 1.42670 1.05573 1.01414 1.89413 1.20823 0.93519 0.84146 0.98252 1.21530 0.97064 0.96241 0.96452 0.92942 1.21523 0.97678 0.91791 1.03393 1.21776 0.97811 0.99590 0.96880 1.22967 1.00528 0.84090 0.98226 1.48033 1.06054 1.09238 1.68958 1.17279 0.81996 0.86371 0.76631 1.90831 1.74596 1.28525 1.51700 1.21224 0.93141 0.92000 1.18845 1.23504 0.95292 0.90174 0.96297 1.50816 1.09519 1.04513 1.46796 1.24084 0.71750 1.01801 1.01679 1.23536 0.94292 0.98280 1.02346 1.22715 0.95304 1.02092 0.96050 1.23460 0.96367 1.03900 0.94744 1.81875 0.85746 1.16170 1.22056 1.74009 1.22011 1.00620 1.12054 1.21479 0.92868 0.87185 0.97923 0.94095 0.79707 0.95381 0.95427 0.90385 0.90455 0.87655 0.92948 0.83873 0.90553 0.76079 0.83023 0.88875 0.87900 0.87189 0.89377 0.88787 0.90374 0.90964 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.14 13.06 21.65 0.28 -62.86 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 3 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.75 -40.74 5.38 -343.47 -1.85 -42.59 16 10 C 0.16 6.70 5.66 86.38 0.49 7.19 16 11 C -0.09 -3.29 2.37 -10.71 -0.03 -3.32 16 12 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.11 -2.71 5.17 30.62 0.16 -2.55 16 14 C -0.12 -2.76 6.06 30.53 0.19 -2.58 16 15 C 0.06 1.63 6.28 86.22 0.54 2.17 16 16 N -0.59 -19.62 2.98 -823.49 -2.45 -22.07 16 17 C 0.59 20.96 7.69 86.69 0.67 21.63 16 18 O -0.58 -25.00 16.30 -3.99 -0.07 -25.07 16 19 C -0.11 -3.16 6.77 40.82 0.28 -2.88 16 20 C 0.10 2.21 10.49 83.85 0.88 3.09 16 21 N -0.33 -5.75 3.83 -324.03 -1.24 -6.99 16 22 C 0.11 0.92 5.06 45.52 0.23 1.15 16 23 C -0.15 -0.77 7.44 31.12 0.23 -0.54 16 24 C -0.12 -0.39 8.08 31.12 0.25 -0.14 16 25 C -0.15 -1.02 7.88 31.12 0.25 -0.78 16 26 N -0.08 -1.83 13.78 37.02 0.51 -1.32 16 27 N -0.21 -5.59 8.64 -49.99 -0.43 -6.02 16 28 C 0.13 4.83 5.51 86.36 0.48 5.31 16 29 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.37 22.05 6.89 -92.71 -0.64 21.42 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.14 3.63 3.62 -103.47 -0.37 3.25 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.22 3.64 6.78 -2.91 -0.02 3.62 16 40 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.62 6.39 -2.39 -0.02 0.60 16 42 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.06 2.74 6.23 -2.38 -0.01 2.73 16 Total: -1.00 -79.55 382.97 2.67 -76.88 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.03 Total: 30.12 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.91 Total: 9.79 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -5.18 Total: -141.85 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -79.55 2.67 -76.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713230349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.859 kcal (2) G-P(sol) polarization free energy of solvation -79.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds