Wall clock time and date at job start Tue Mar 31 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48495 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47019 * 300.00120 * 3 2 1 6 6 H 1.48494 * 109.47035 * 59.99786 * 3 2 1 7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99741 * 168.03418 * 7 2 1 9 9 N 1.36942 * 120.00016 * 348.03196 * 7 2 1 10 10 C 1.46960 * 120.65164 * 328.46982 * 9 7 2 11 11 C 1.53197 * 108.88525 * 233.52975 * 10 9 7 12 12 C 1.53042 * 109.31180 * 305.44423 * 11 10 9 13 13 C 1.53041 * 109.54038 * 61.36441 * 12 11 10 14 14 C 1.46928 * 120.62949 * 148.64252 * 9 7 2 15 15 H 1.08996 * 109.58599 * 246.32536 * 14 9 7 16 16 C 1.53001 * 109.58752 * 6.61351 * 14 9 7 17 17 N 1.46504 * 109.46631 * 299.44376 * 16 14 9 18 18 C 1.34779 * 119.99484 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00208 * 359.72255 * 18 17 16 20 20 C 1.50708 * 119.99487 * 179.97438 * 18 17 16 21 21 N 1.46502 * 109.46631 * 179.72345 * 20 18 17 22 22 C 1.35309 * 125.86817 * 124.71958 * 21 20 18 23 23 C 1.35343 * 106.17599 * 179.90096 * 22 21 20 24 24 C 1.50705 * 126.74988 * 180.12157 * 23 22 21 25 25 C 1.52995 * 117.50179 * 343.92284 * 24 23 22 26 26 C 1.52997 * 60.00104 * 252.50636 * 25 24 23 27 27 N 1.33769 * 106.49896 * 0.35080 * 23 22 21 28 28 N 1.28634 * 108.88274 * 359.77307 * 27 23 22 29 29 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47028 * 113.74882 * 10 9 7 31 31 H 1.08995 * 109.71310 * 353.45635 * 10 9 7 32 32 H 1.08994 * 109.49726 * 185.49522 * 11 10 9 33 33 H 1.09000 * 109.49561 * 65.39359 * 11 10 9 34 34 H 1.09005 * 109.46043 * 301.34596 * 12 11 10 35 35 H 1.09001 * 109.45138 * 181.37965 * 12 11 10 36 36 H 1.08999 * 109.49935 * 178.67922 * 13 12 11 37 37 H 1.09003 * 109.49555 * 58.58766 * 13 12 11 38 38 H 1.09000 * 109.47134 * 179.44556 * 16 14 9 39 39 H 1.08997 * 109.47510 * 59.43841 * 16 14 9 40 40 H 0.97000 * 120.00130 * 359.97438 * 17 16 14 41 41 H 1.08991 * 109.47549 * 299.72485 * 20 18 17 42 42 H 1.09006 * 109.46706 * 59.72844 * 20 18 17 43 43 H 1.08006 * 126.91078 * 0.02562 * 22 21 20 44 44 H 1.09007 * 115.54737 * 129.62773 * 24 23 22 45 45 H 1.09000 * 117.49932 * 359.97438 * 25 24 23 46 46 H 1.09000 * 117.50115 * 145.02041 * 25 24 23 47 47 H 1.09004 * 117.50055 * 252.51112 * 26 25 24 48 48 H 1.08998 * 117.52116 * 107.47572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0727 -1.2121 -0.1945 9 7 1.3479 -2.3753 0.2449 10 6 0.1812 -2.4043 1.1379 11 6 0.4090 -3.4675 2.2171 12 6 0.7226 -4.8080 1.5487 13 6 2.0024 -4.6796 0.7193 14 6 1.7925 -3.6301 -0.3768 15 1 1.0340 -3.9798 -1.0771 16 6 3.1086 -3.3957 -1.1210 17 7 2.9052 -2.3916 -2.1683 18 6 3.9337 -2.0232 -2.9575 19 8 5.0288 -2.5193 -2.7975 20 6 3.7243 -0.9907 -4.0352 21 7 4.9859 -0.7618 -4.7438 22 6 5.1766 -0.8715 -6.0789 23 6 6.4781 -0.5730 -6.2997 24 6 7.1849 -0.5509 -7.6306 25 6 6.4981 -1.2475 -8.8069 26 6 7.7341 -1.8767 -8.1610 27 7 7.0149 -0.3065 -5.1038 28 7 6.1048 -0.4270 -4.2028 29 1 -0.4851 0.8400 0.0004 30 1 -0.7106 -2.6530 0.5626 31 1 0.0531 -1.4289 1.6072 32 1 -0.4895 -3.5660 2.8261 33 1 1.2466 -3.1711 2.8486 34 1 -0.1047 -5.0917 0.8981 35 1 0.8610 -5.5717 2.3140 36 1 2.2379 -5.6408 0.2625 37 1 2.8249 -4.3718 1.3650 38 1 3.4418 -4.3299 -1.5732 39 1 3.8644 -3.0415 -0.4200 40 1 2.0301 -1.9925 -2.2941 41 1 2.9719 -1.3472 -4.7387 42 1 3.3866 -0.0578 -3.5838 43 1 4.4381 -1.1409 -6.8196 44 1 7.7567 0.3522 -7.8442 45 1 5.5352 -1.7223 -8.6183 46 1 6.6179 -0.8028 -9.7948 47 1 8.6671 -1.8459 -8.7239 48 1 7.5846 -2.7650 -7.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713252795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:34 Heat of formation + Delta-G solvation = 113.013868 kcal Electronic energy + Delta-G solvation = -29169.221420 eV Core-core repulsion = 25263.105659 eV Total energy + Delta-G solvation = -3906.115761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.17699 -39.45082 -37.85722 -37.39925 -34.48236 -34.16806 -33.16887 -31.06225 -30.65708 -30.01074 -28.66333 -25.97869 -24.75273 -24.10862 -22.84309 -22.25522 -21.89496 -20.87359 -20.62346 -19.91243 -19.17613 -17.59759 -17.36224 -16.47612 -16.05518 -15.75477 -15.35566 -15.24589 -14.90627 -14.51283 -14.43505 -14.10308 -13.97870 -13.51229 -13.28653 -12.99439 -12.76104 -12.47874 -12.41015 -12.13045 -11.78169 -11.76317 -11.48285 -11.29501 -11.18739 -11.03224 -10.86082 -10.84980 -10.63960 -10.38455 -10.36271 -10.22390 -10.19934 -10.06776 -9.65597 -9.53649 -9.35268 -8.98055 -8.72541 -8.41431 -6.75940 -5.94428 -3.42611 1.66688 2.27137 2.59563 2.82697 3.23025 3.35277 3.41345 3.54505 3.61119 4.16632 4.33289 4.54723 4.68394 4.71764 4.77425 4.92645 5.02911 5.09425 5.14716 5.22084 5.29825 5.40386 5.40989 5.56541 5.61063 5.62216 5.79542 5.88005 5.88879 5.94288 5.99178 6.04782 6.18019 6.18676 6.29400 6.33466 6.52173 6.56915 6.63292 6.66615 6.77263 6.86098 6.97240 7.31213 7.58558 7.69114 7.94984 8.30610 8.55398 8.67887 9.06014 9.67095 10.25402 11.11782 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.003078 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.678325 B = 9094.986486 C =10301.036160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.161 3.839 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.685 5.685 18 C 0.496 3.504 19 O -0.533 6.533 20 C 0.093 3.907 21 N -0.274 5.274 22 C -0.052 4.052 23 C 0.004 3.996 24 C -0.068 4.068 25 C -0.171 4.171 26 C -0.166 4.166 27 N -0.271 5.271 28 N -0.045 5.045 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.417 0.583 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.187 0.813 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -5.322 -12.576 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.337 5.337 18 C 0.279 3.721 19 O -0.411 6.411 20 C -0.033 4.033 21 N -0.067 5.067 22 C -0.202 4.202 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.209 4.209 26 C -0.204 4.204 27 N -0.137 5.137 28 N -0.025 5.025 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.255 0.745 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.204 0.796 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.036 -5.201 -11.095 12.901 hybrid contribution -0.896 0.893 -0.754 1.473 sum 3.139 -4.308 -11.849 12.993 Atomic orbital electron populations 1.69995 1.05124 1.25472 1.53667 1.25082 0.95204 0.98031 1.00675 0.86450 0.79947 0.84297 0.77670 1.19884 1.21601 1.21335 1.19272 0.91566 0.83738 1.43666 0.91162 1.44082 1.33835 1.02513 1.50865 1.20781 0.88121 0.97280 0.89075 1.22201 0.99927 0.96662 0.99622 1.21361 0.97362 0.97437 0.98334 1.21943 0.98186 0.98133 0.98514 1.20725 0.92829 0.88644 0.92359 0.94989 1.21339 0.98586 0.89811 0.88996 1.45871 1.13049 1.42107 1.32700 1.19999 0.85551 0.83345 0.83228 1.90777 1.24182 1.55355 1.70748 1.21977 0.81886 1.02892 0.96496 1.46780 1.10070 1.44031 1.05777 1.23202 0.99766 1.11047 0.86155 1.20945 0.91407 1.06528 0.94521 1.19954 1.02828 0.97844 0.88144 1.23008 0.97447 1.03756 0.96662 1.22998 0.97881 0.96359 1.03152 1.75079 1.23078 1.18101 0.97482 1.78508 0.87691 1.15247 1.21044 0.93572 0.96357 0.89598 0.93490 0.92829 0.92865 0.93674 0.93005 0.92036 0.92497 0.91267 0.74542 0.84960 0.85026 0.79582 0.86193 0.88611 0.88065 0.88196 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.13 11.14 55.49 0.62 -22.51 16 2 C 0.01 0.23 5.02 -17.43 -0.09 0.15 16 3 Si 0.89 20.27 29.57 -169.99 -5.03 15.24 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -5.96 6.99 -15.06 -0.11 -6.06 16 8 H 0.07 1.73 5.86 -52.48 -0.31 1.42 16 9 N -0.59 -12.67 2.98 -164.74 -0.49 -13.16 16 10 C 0.17 3.72 5.25 -3.69 -0.02 3.70 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 13 C -0.13 -2.05 5.37 -26.61 -0.14 -2.19 16 14 C 0.16 2.90 3.00 -67.60 -0.20 2.70 16 15 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 16 C 0.14 2.40 4.43 -4.04 -0.02 2.38 16 17 N -0.69 -11.61 3.86 -60.29 -0.23 -11.84 16 18 C 0.50 8.51 7.84 -10.98 -0.09 8.43 16 19 O -0.53 -11.31 15.68 5.56 0.09 -11.22 16 20 C 0.09 1.23 6.94 -5.19 -0.04 1.20 16 21 N -0.27 -4.24 3.20 -62.44 -0.20 -4.44 16 22 C -0.05 -0.65 10.89 -17.05 -0.19 -0.84 16 23 C 0.00 0.05 6.88 -82.78 -0.57 -0.52 16 24 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 25 C -0.17 -1.28 10.02 -26.73 -0.27 -1.55 16 26 C -0.17 -1.49 10.23 -26.73 -0.27 -1.76 16 27 N -0.27 -4.94 12.41 33.29 0.41 -4.53 16 28 N -0.05 -0.87 12.13 60.35 0.73 -0.14 16 29 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 2.11 6.17 -51.93 -0.32 1.79 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.38 7.40 -51.93 -0.38 1.00 16 40 H 0.42 7.05 7.42 -40.82 -0.30 6.75 16 41 H 0.13 1.12 8.07 -51.93 -0.42 0.71 16 42 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 43 H 0.19 1.50 7.45 -52.48 -0.39 1.11 16 44 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.10 0.65 7.23 -51.93 -0.38 0.28 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -31.61 385.35 -8.74 -40.35 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.55 Total: 6.68 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.89 Total: -0.24 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.84 Total: -56.62 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.61 -8.74 -40.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713252795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.361 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds