Wall clock time and date at job start Tue Mar 31 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48495 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47019 * 300.00120 * 3 2 1 6 6 H 1.48494 * 109.47035 * 59.99786 * 3 2 1 7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99741 * 168.03418 * 7 2 1 9 9 N 1.36942 * 120.00016 * 348.03196 * 7 2 1 10 10 C 1.46960 * 120.65164 * 328.46982 * 9 7 2 11 11 C 1.53197 * 108.88525 * 233.52975 * 10 9 7 12 12 C 1.53042 * 109.31180 * 305.44423 * 11 10 9 13 13 C 1.53041 * 109.54038 * 61.36441 * 12 11 10 14 14 C 1.46928 * 120.62949 * 148.64252 * 9 7 2 15 15 H 1.08996 * 109.58599 * 246.32536 * 14 9 7 16 16 C 1.53001 * 109.58752 * 6.61351 * 14 9 7 17 17 N 1.46504 * 109.46631 * 299.44376 * 16 14 9 18 18 C 1.34779 * 119.99484 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00208 * 359.72255 * 18 17 16 20 20 C 1.50708 * 119.99487 * 179.97438 * 18 17 16 21 21 N 1.46502 * 109.46631 * 179.72345 * 20 18 17 22 22 C 1.35309 * 125.86817 * 124.71958 * 21 20 18 23 23 C 1.35343 * 106.17599 * 179.90096 * 22 21 20 24 24 C 1.50705 * 126.74988 * 180.12157 * 23 22 21 25 25 C 1.52995 * 117.50179 * 343.92284 * 24 23 22 26 26 C 1.52997 * 60.00104 * 252.50636 * 25 24 23 27 27 N 1.33769 * 106.49896 * 0.35080 * 23 22 21 28 28 N 1.28634 * 108.88274 * 359.77307 * 27 23 22 29 29 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47028 * 113.74882 * 10 9 7 31 31 H 1.08995 * 109.71310 * 353.45635 * 10 9 7 32 32 H 1.08994 * 109.49726 * 185.49522 * 11 10 9 33 33 H 1.09000 * 109.49561 * 65.39359 * 11 10 9 34 34 H 1.09005 * 109.46043 * 301.34596 * 12 11 10 35 35 H 1.09001 * 109.45138 * 181.37965 * 12 11 10 36 36 H 1.08999 * 109.49935 * 178.67922 * 13 12 11 37 37 H 1.09003 * 109.49555 * 58.58766 * 13 12 11 38 38 H 1.09000 * 109.47134 * 179.44556 * 16 14 9 39 39 H 1.08997 * 109.47510 * 59.43841 * 16 14 9 40 40 H 0.97000 * 120.00130 * 359.97438 * 17 16 14 41 41 H 1.08991 * 109.47549 * 299.72485 * 20 18 17 42 42 H 1.09006 * 109.46706 * 59.72844 * 20 18 17 43 43 H 1.08006 * 126.91078 * 0.02562 * 22 21 20 44 44 H 1.09007 * 115.54737 * 129.62773 * 24 23 22 45 45 H 1.09000 * 117.49932 * 359.97438 * 25 24 23 46 46 H 1.09000 * 117.50115 * 145.02041 * 25 24 23 47 47 H 1.09004 * 117.50055 * 252.51112 * 26 25 24 48 48 H 1.08998 * 117.52116 * 107.47572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0727 -1.2121 -0.1945 9 7 1.3479 -2.3753 0.2449 10 6 0.1812 -2.4043 1.1379 11 6 0.4090 -3.4675 2.2171 12 6 0.7226 -4.8080 1.5487 13 6 2.0024 -4.6796 0.7193 14 6 1.7925 -3.6301 -0.3768 15 1 1.0340 -3.9798 -1.0771 16 6 3.1086 -3.3957 -1.1210 17 7 2.9052 -2.3916 -2.1683 18 6 3.9337 -2.0232 -2.9575 19 8 5.0288 -2.5193 -2.7975 20 6 3.7243 -0.9907 -4.0352 21 7 4.9859 -0.7618 -4.7438 22 6 5.1766 -0.8715 -6.0789 23 6 6.4781 -0.5730 -6.2997 24 6 7.1849 -0.5509 -7.6306 25 6 6.4981 -1.2475 -8.8069 26 6 7.7341 -1.8767 -8.1610 27 7 7.0149 -0.3065 -5.1038 28 7 6.1048 -0.4270 -4.2028 29 1 -0.4851 0.8400 0.0004 30 1 -0.7106 -2.6530 0.5626 31 1 0.0531 -1.4289 1.6072 32 1 -0.4895 -3.5660 2.8261 33 1 1.2466 -3.1711 2.8486 34 1 -0.1047 -5.0917 0.8981 35 1 0.8610 -5.5717 2.3140 36 1 2.2379 -5.6408 0.2625 37 1 2.8249 -4.3718 1.3650 38 1 3.4418 -4.3299 -1.5732 39 1 3.8644 -3.0415 -0.4200 40 1 2.0301 -1.9925 -2.2941 41 1 2.9719 -1.3472 -4.7387 42 1 3.3866 -0.0578 -3.5838 43 1 4.4381 -1.1409 -6.8196 44 1 7.7567 0.3522 -7.8442 45 1 5.5352 -1.7223 -8.6183 46 1 6.6179 -0.8028 -9.7948 47 1 8.6671 -1.8459 -8.7239 48 1 7.5846 -2.7650 -7.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713252795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:33 Heat of formation + Delta-G solvation = 92.988974 kcal Electronic energy + Delta-G solvation = -29170.089765 eV Core-core repulsion = 25263.105659 eV Total energy + Delta-G solvation = -3906.984105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.30225 -40.86352 -39.34691 -38.15470 -35.83797 -35.41927 -34.90966 -32.53078 -31.71318 -31.69067 -29.86659 -27.56790 -26.32128 -25.03379 -23.88217 -23.66819 -22.90529 -22.23584 -21.76666 -21.13684 -20.66489 -18.88416 -18.53062 -18.04972 -17.37430 -17.12869 -16.56878 -16.33296 -16.23399 -15.79961 -15.57954 -15.54673 -15.28004 -14.88629 -14.69243 -14.53910 -14.09755 -13.90058 -13.62687 -13.41809 -13.25613 -12.87553 -12.81311 -12.58837 -12.53919 -12.32790 -12.28587 -12.18743 -12.04300 -11.80347 -11.73641 -11.53549 -11.41905 -11.19817 -11.12985 -11.08072 -10.74032 -10.53383 -9.99551 -9.93601 -8.55467 -7.83848 -5.31414 0.58150 1.22857 1.35855 1.46256 1.48769 1.50595 1.53449 2.28127 2.46848 2.88656 3.27812 3.31881 3.54916 3.65526 3.72220 3.89401 3.98527 3.99951 4.01889 4.06166 4.21884 4.27124 4.28045 4.40342 4.43414 4.54216 4.63665 4.73616 4.79535 4.85878 4.87420 4.98583 4.99907 5.14672 5.20281 5.21878 5.23652 5.28018 5.31487 5.36058 5.46511 5.49945 5.56953 5.65306 5.75187 5.85603 6.44384 6.57884 7.18239 7.21347 7.51660 7.88195 8.41662 9.20130 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.003078 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.678325 B = 9094.986486 C =10301.036160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 0.929 3.071 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.298 1.298 7 C -0.235 4.235 8 H 0.058 0.942 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.125 4.125 14 C 0.162 3.838 15 H 0.042 0.958 16 C 0.142 3.858 17 N -0.683 5.683 18 C 0.495 3.505 19 O -0.578 6.578 20 C 0.094 3.906 21 N -0.277 5.277 22 C -0.033 4.033 23 C -0.009 4.009 24 C -0.092 4.092 25 C -0.141 4.141 26 C -0.173 4.173 27 N -0.309 5.309 28 N -0.109 5.109 29 H 0.249 0.751 30 H 0.006 0.994 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.418 0.582 41 H 0.189 0.811 42 H 0.136 0.864 43 H 0.238 0.762 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -6.979 -14.890 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.220 4.220 3 Si 0.760 3.240 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.076 0.924 9 N -0.326 5.326 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.164 4.164 14 C 0.057 3.943 15 H 0.060 0.940 16 C 0.018 3.982 17 N -0.333 5.333 18 C 0.279 3.721 19 O -0.458 6.458 20 C -0.030 4.030 21 N -0.070 5.070 22 C -0.183 4.183 23 C -0.147 4.147 24 C -0.112 4.112 25 C -0.178 4.178 26 C -0.210 4.210 27 N -0.175 5.175 28 N -0.087 5.087 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.256 0.744 41 H 0.206 0.794 42 H 0.154 0.846 43 H 0.255 0.745 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.143 0.857 47 H 0.133 0.867 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.856 -6.863 -13.392 15.317 hybrid contribution -0.497 1.346 -0.060 1.436 sum 2.359 -5.518 -13.452 14.729 Atomic orbital electron populations 1.70078 1.05716 1.25273 1.55504 1.25372 0.95488 0.99393 1.01779 0.85818 0.78174 0.82779 0.77276 1.21432 1.20855 1.22528 1.19205 0.90983 0.84657 1.41718 0.92396 1.44242 1.33608 1.03184 1.51522 1.20596 0.87757 0.96730 0.89724 1.22071 1.00300 0.96814 0.98464 1.21341 0.97238 0.96459 0.98922 1.21916 0.98084 0.98678 0.97728 1.20875 0.92824 0.87529 0.93118 0.94015 1.21245 0.97591 0.90604 0.88790 1.45845 1.13134 1.41945 1.32426 1.20605 0.84565 0.83320 0.83570 1.90760 1.25798 1.57148 1.72121 1.22221 0.82287 1.01769 0.96753 1.46976 1.09705 1.43402 1.06906 1.24019 1.00185 1.08452 0.85683 1.21653 0.92415 1.05972 0.94685 1.20082 1.04677 0.98735 0.87727 1.23171 0.97087 1.01283 0.96252 1.23047 0.99791 0.94834 1.03344 1.74992 1.24089 1.19226 0.99213 1.78451 0.89306 1.18502 1.22453 0.94117 0.97591 0.93202 0.91785 0.94002 0.92046 0.91031 0.89955 0.93294 0.90764 0.94287 0.74379 0.79360 0.84644 0.74528 0.86032 0.87312 0.85681 0.86746 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.94 11.14 21.65 0.24 -47.70 16 2 C -0.02 -1.16 5.02 84.86 0.43 -0.74 16 3 Si 0.93 42.55 29.57 68.60 2.03 44.58 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.24 -11.19 6.99 84.03 0.59 -10.61 16 8 H 0.06 2.91 5.86 -2.91 -0.02 2.90 16 9 N -0.60 -25.73 2.98 -675.13 -2.01 -27.75 16 10 C 0.18 7.62 5.25 86.36 0.45 8.08 16 11 C -0.14 -4.71 6.08 30.67 0.19 -4.52 16 12 C -0.10 -2.88 5.88 30.62 0.18 -2.70 16 13 C -0.12 -3.68 5.37 30.67 0.16 -3.51 16 14 C 0.16 5.61 3.00 44.98 0.14 5.74 16 15 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 16 C 0.14 4.91 4.43 86.38 0.38 5.29 16 17 N -0.68 -22.66 3.86 -463.04 -1.79 -24.45 16 18 C 0.49 16.75 7.84 87.66 0.69 17.44 16 19 O -0.58 -24.93 15.68 -3.03 -0.05 -24.97 16 20 C 0.09 2.32 6.94 85.64 0.59 2.91 16 21 N -0.28 -8.29 3.20 -351.46 -1.12 -9.42 16 22 C -0.03 -0.75 10.89 83.49 0.91 0.16 16 23 C -0.01 -0.24 6.88 41.60 0.29 0.05 16 24 C -0.09 -1.78 6.33 -11.54 -0.07 -1.85 16 25 C -0.14 -1.59 10.02 30.59 0.31 -1.29 16 26 C -0.17 -2.78 10.23 30.59 0.31 -2.47 16 27 N -0.31 -11.63 12.41 -48.60 -0.60 -12.23 16 28 N -0.11 -4.30 12.13 37.02 0.45 -3.86 16 29 H 0.25 12.85 8.31 -92.71 -0.77 12.08 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 2.50 6.17 -2.39 -0.01 2.49 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.59 7.40 -2.39 -0.02 1.57 16 40 H 0.42 13.71 7.42 -92.71 -0.69 13.03 16 41 H 0.19 2.40 8.07 -2.39 -0.02 2.39 16 42 H 0.14 3.30 8.14 -2.38 -0.02 3.28 16 43 H 0.24 2.58 7.45 -2.91 -0.02 2.55 16 44 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.11 0.96 7.23 -2.39 -0.02 0.94 16 46 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.56 385.35 2.97 -70.59 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.28 Total: 23.21 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.54 Total: 11.99 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -4.84 Total: -125.40 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.56 2.97 -70.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713252795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.580 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds