Wall clock time and date at job start Tue Mar 31 2020 17:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86790 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47618 * 269.99774 * 3 2 1 5 5 H 1.48500 * 109.47501 * 30.00378 * 3 2 1 6 6 H 1.48506 * 109.47363 * 150.00079 * 3 2 1 7 7 C 1.38822 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00015 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99538 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99544 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46899 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.50308 * 54.93103 * 11 10 9 13 13 C 1.53045 * 109.51998 * 294.85323 * 11 10 9 14 14 C 1.53039 * 109.53617 * 178.67158 * 13 11 10 15 15 C 1.52751 * 109.38709 * 61.23884 * 14 13 11 16 16 N 1.46924 * 109.00767 * 305.59039 * 15 14 13 17 17 C 1.34777 * 120.62933 * 233.58288 * 16 15 14 18 18 O 1.21282 * 119.99977 * 184.44165 * 17 16 15 19 19 C 1.50696 * 120.00272 * 4.44158 * 17 16 15 20 20 H 1.08998 * 109.72128 * 325.32577 * 19 17 16 21 21 C 1.53430 * 109.69447 * 85.88896 * 19 17 16 22 22 C 1.53105 * 109.56030 * 169.42922 * 21 19 17 23 23 C 1.53426 * 109.57973 * 289.94114 * 22 21 19 24 24 C 1.50599 * 108.33146 * 49.81371 * 23 22 21 25 25 N 1.32906 * 129.15966 * 163.47999 * 24 23 22 26 26 N 1.29028 * 108.63788 * 179.85664 * 25 24 23 27 27 N 1.29108 * 110.25306 * 0.41532 * 26 25 24 28 28 H 0.97002 * 126.00923 * 179.78057 * 27 26 25 29 29 C 1.34401 * 107.98625 * 359.51055 * 27 26 25 30 30 C 1.46924 * 118.74424 * 53.30820 * 16 15 14 31 31 H 0.96995 * 119.99899 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00745 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47209 * 60.00494 * 10 9 7 34 34 H 1.08997 * 109.47527 * 299.99768 * 10 9 7 35 35 H 1.09003 * 109.45802 * 298.69189 * 13 11 10 36 36 H 1.08996 * 109.46060 * 58.64823 * 13 11 10 37 37 H 1.09001 * 109.49487 * 181.31879 * 14 13 11 38 38 H 1.09001 * 109.49336 * 301.37765 * 14 13 11 39 39 H 1.08998 * 109.51310 * 185.70628 * 15 14 13 40 40 H 1.09000 * 109.43248 * 65.42016 * 15 14 13 41 41 H 1.09005 * 109.45998 * 289.45866 * 21 19 17 42 42 H 1.09009 * 109.45788 * 49.40059 * 21 19 17 43 43 H 1.09007 * 109.44998 * 49.96611 * 22 21 19 44 44 H 1.08992 * 109.46032 * 169.92622 * 22 21 19 45 45 H 1.08992 * 109.69511 * 169.52283 * 23 22 21 46 46 H 1.09001 * 109.69051 * 290.10782 * 23 22 21 47 47 H 1.09005 * 109.58470 * 66.42367 * 30 16 15 48 48 H 1.08990 * 109.59493 * 186.85808 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1915 -0.0011 12 1 5.8663 -1.5446 0.8399 13 6 6.0084 -1.5020 -1.3100 14 6 7.5071 -1.1924 -1.2964 15 6 8.2933 -2.4970 -1.1825 16 7 7.8197 -3.2401 -0.0068 17 6 8.6870 -3.6590 0.9359 18 8 8.2958 -4.3402 1.8600 19 6 10.1427 -3.2811 0.8420 20 1 10.4469 -3.2462 -0.2041 21 6 10.3634 -1.9082 1.4905 22 6 11.8647 -1.6433 1.6315 23 6 12.4521 -2.5708 2.7033 24 6 12.0036 -3.9780 2.4093 25 7 12.4875 -5.1268 2.8704 26 7 11.8036 -6.0958 2.3625 27 7 10.8903 -5.6339 1.5755 28 1 10.2502 -6.1618 1.0729 29 6 10.9783 -4.2928 1.5797 30 6 6.3819 -3.5125 0.1248 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3622 -0.0007 33 1 3.8484 -3.0428 -0.8908 34 1 3.8491 -3.0424 0.8891 35 1 5.7809 -2.1596 -2.1490 36 1 5.4467 -0.5737 -1.4138 37 1 7.7811 -0.6804 -2.2189 38 1 7.7390 -0.5544 -0.4436 39 1 9.3544 -2.2740 -1.0707 40 1 8.1360 -3.0948 -2.0802 41 1 9.9154 -1.1353 0.8659 42 1 9.8979 -1.8931 2.4761 43 1 12.3579 -1.8325 0.6779 44 1 12.0245 -0.6053 1.9230 45 1 13.5405 -2.5192 2.6772 46 1 12.0929 -2.2688 3.6871 47 1 6.0656 -4.1947 -0.6643 48 1 6.1821 -3.9591 1.0987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714079995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:29 Heat of formation + Delta-G solvation = 60.482385 kcal Electronic energy + Delta-G solvation = -29387.362554 eV Core-core repulsion = 25478.968857 eV Total energy + Delta-G solvation = -3908.393697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.77412 -40.72021 -38.20372 -37.15993 -35.29796 -34.12838 -32.98608 -31.98775 -31.14401 -30.57424 -30.20319 -26.23478 -25.94817 -24.58943 -23.42829 -23.06346 -22.69295 -21.93463 -20.48333 -20.05933 -19.38653 -18.23227 -17.98582 -17.52974 -16.39679 -16.08201 -15.64591 -15.24654 -14.91398 -14.69870 -14.46563 -14.37226 -14.24153 -14.15857 -13.90846 -13.82638 -13.22157 -12.97357 -12.84886 -12.66361 -12.36906 -12.14246 -12.00280 -11.80070 -11.75513 -11.50712 -11.32899 -11.24723 -10.96530 -10.96269 -10.88135 -10.64360 -10.59931 -10.45422 -10.17062 -10.00553 -9.63811 -9.20829 -8.97066 -8.90191 -7.28721 -5.81432 -3.17322 1.23527 2.12392 2.21561 2.42578 2.62122 3.31484 3.33045 3.40169 3.72960 3.98540 4.05446 4.24929 4.34391 4.49505 4.53744 4.60660 4.65184 4.71648 4.80354 4.85019 4.86993 4.97708 5.08736 5.17849 5.20178 5.33705 5.36062 5.39682 5.47947 5.54692 5.58233 5.58973 5.62090 5.70703 5.74278 5.76577 5.81899 5.89180 5.93227 6.20361 6.23519 6.33541 6.52362 6.58994 6.67148 7.03070 7.74321 7.94415 8.17286 8.37462 9.16018 9.88117 10.07693 11.37041 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002593 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.343043 B =10795.347290 C =11220.627095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.164 3.836 11 C -0.111 4.111 12 H 0.074 0.926 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.101 3.899 16 N -0.602 5.602 17 C 0.513 3.487 18 O -0.533 6.533 19 C -0.035 4.035 20 H 0.114 0.886 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.036 4.036 24 C -0.011 4.011 25 N -0.260 5.260 26 N -0.085 5.085 27 N -0.367 5.367 28 H 0.448 0.552 29 C 0.007 3.993 30 C 0.118 3.882 31 H 0.260 0.740 32 H 0.360 0.640 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.396 -3.921 -3.419 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.037 3.963 11 C -0.130 4.130 12 H 0.092 0.908 13 C -0.152 4.152 14 C -0.175 4.175 15 C -0.022 4.022 16 N -0.335 5.335 17 C 0.300 3.700 18 O -0.410 6.410 19 C -0.058 4.058 20 H 0.131 0.869 21 C -0.145 4.145 22 C -0.154 4.154 23 C -0.075 4.075 24 C -0.151 4.151 25 N -0.126 5.126 26 N -0.064 5.064 27 N -0.085 5.085 28 H 0.294 0.706 29 C -0.129 4.129 30 C -0.004 4.004 31 H 0.070 0.930 32 H 0.193 0.807 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 27.689 -5.633 -2.236 28.345 hybrid contribution -0.620 1.745 -0.873 2.048 sum 27.069 -3.888 -3.109 27.523 Atomic orbital electron populations 1.69700 1.05101 1.25848 1.57492 1.24682 0.95242 0.97200 1.02051 0.86551 0.79217 0.85049 0.77721 1.21047 1.21677 1.20410 1.19057 0.80583 0.94764 1.43044 0.89207 1.42679 1.04012 1.02066 1.91197 1.20555 0.87394 0.89542 0.98856 1.21734 0.96674 0.96147 0.98494 0.90780 1.21562 0.94270 1.01851 0.97493 1.21891 0.96494 0.96375 1.02739 1.21839 0.98786 0.93539 0.87997 1.48141 1.07960 1.55302 1.22061 1.20368 0.87470 0.80156 0.82018 1.90762 1.79095 1.38119 1.33022 1.20034 0.90605 0.94341 1.00816 0.86857 1.21608 0.97894 0.92644 1.02394 1.21644 0.94247 1.00065 0.99483 1.20010 1.01447 0.86174 0.99850 1.21659 0.97189 0.96632 0.99669 1.74825 1.21348 0.96448 1.19974 1.78572 1.00260 1.21371 1.06208 1.44624 1.25584 1.06031 1.32293 0.70630 1.21151 1.01645 0.84817 1.05312 1.21692 0.77673 0.97273 1.03750 0.93018 0.80652 0.95256 0.95364 0.91499 0.90780 0.90449 0.91401 0.89767 0.90797 0.89575 0.90143 0.90994 0.89736 0.89436 0.89593 0.90947 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 2 C 0.00 0.12 5.50 -17.42 -0.10 0.02 16 3 Si 0.88 21.57 27.73 -169.99 -4.71 16.86 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.20 5.12 -59.90 -0.31 -17.50 16 10 C 0.16 2.97 5.65 -4.04 -0.02 2.94 16 11 C -0.11 -1.50 2.37 -90.49 -0.21 -1.72 16 12 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.11 -1.34 5.06 -26.69 -0.14 -1.47 16 14 C -0.14 -1.09 6.06 -26.84 -0.16 -1.25 16 15 C 0.10 0.65 6.24 -3.94 -0.02 0.63 16 16 N -0.60 -5.64 2.98 -173.04 -0.52 -6.16 16 17 C 0.51 5.30 6.77 -10.99 -0.07 5.22 16 18 O -0.53 -7.70 15.49 5.56 0.09 -7.61 16 19 C -0.03 -0.25 2.05 -92.78 -0.19 -0.44 16 20 H 0.11 0.52 6.28 -51.93 -0.33 0.19 16 21 C -0.11 -0.66 5.15 -26.45 -0.14 -0.79 16 22 C -0.12 -0.54 5.90 -26.46 -0.16 -0.70 16 23 C -0.04 -0.25 6.30 -27.71 -0.17 -0.42 16 24 C -0.01 -0.12 7.11 -83.12 -0.59 -0.71 16 25 N -0.26 -3.44 12.40 33.16 0.41 -3.03 16 26 N -0.09 -1.09 13.40 60.35 0.81 -0.29 16 27 N -0.37 -3.79 6.66 33.39 0.22 -3.57 16 28 H 0.45 3.56 8.96 -190.07 -1.70 1.85 16 29 C 0.01 0.07 5.94 -82.50 -0.49 -0.42 16 30 C 0.12 1.38 5.71 -3.71 -0.02 1.36 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.36 7.97 4.72 -40.82 -0.19 7.78 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.03 7.16 -51.93 -0.37 0.66 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.33 5.19 -51.93 -0.27 0.06 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.40 7.89 -51.93 -0.41 -0.01 16 42 H 0.08 0.65 8.08 -51.92 -0.42 0.23 16 43 H 0.07 0.27 8.12 -51.92 -0.42 -0.15 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 1.27 7.03 -51.93 -0.37 0.91 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -35.89 374.15 -8.96 -44.85 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.72 Total: 3.83 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.65 Total: -4.72 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 1.39 Total: -58.84 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.89 -8.96 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714079995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.335 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds