Wall clock time and date at job start Tue Mar 31 2020 17:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86790 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47618 * 269.99774 * 3 2 1 5 5 H 1.48500 * 109.47501 * 30.00378 * 3 2 1 6 6 H 1.48506 * 109.47363 * 150.00079 * 3 2 1 7 7 C 1.38822 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00015 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99538 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99544 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46899 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.50308 * 54.93103 * 11 10 9 13 13 C 1.53045 * 109.51998 * 294.85323 * 11 10 9 14 14 C 1.53039 * 109.53617 * 178.67158 * 13 11 10 15 15 C 1.52751 * 109.38709 * 61.23884 * 14 13 11 16 16 N 1.46924 * 109.00767 * 305.59039 * 15 14 13 17 17 C 1.34777 * 120.62933 * 233.58288 * 16 15 14 18 18 O 1.21282 * 119.99977 * 184.44165 * 17 16 15 19 19 C 1.50696 * 120.00272 * 4.44158 * 17 16 15 20 20 H 1.08998 * 109.72128 * 325.32577 * 19 17 16 21 21 C 1.53430 * 109.69447 * 85.88896 * 19 17 16 22 22 C 1.53105 * 109.56030 * 169.42922 * 21 19 17 23 23 C 1.53426 * 109.57973 * 289.94114 * 22 21 19 24 24 C 1.50599 * 108.33146 * 49.81371 * 23 22 21 25 25 N 1.32906 * 129.15966 * 163.47999 * 24 23 22 26 26 N 1.29028 * 108.63788 * 179.85664 * 25 24 23 27 27 N 1.29108 * 110.25306 * 0.41532 * 26 25 24 28 28 H 0.97002 * 126.00923 * 179.78057 * 27 26 25 29 29 C 1.34401 * 107.98625 * 359.51055 * 27 26 25 30 30 C 1.46924 * 118.74424 * 53.30820 * 16 15 14 31 31 H 0.96995 * 119.99899 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00745 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47209 * 60.00494 * 10 9 7 34 34 H 1.08997 * 109.47527 * 299.99768 * 10 9 7 35 35 H 1.09003 * 109.45802 * 298.69189 * 13 11 10 36 36 H 1.08996 * 109.46060 * 58.64823 * 13 11 10 37 37 H 1.09001 * 109.49487 * 181.31879 * 14 13 11 38 38 H 1.09001 * 109.49336 * 301.37765 * 14 13 11 39 39 H 1.08998 * 109.51310 * 185.70628 * 15 14 13 40 40 H 1.09000 * 109.43248 * 65.42016 * 15 14 13 41 41 H 1.09005 * 109.45998 * 289.45866 * 21 19 17 42 42 H 1.09009 * 109.45788 * 49.40059 * 21 19 17 43 43 H 1.09007 * 109.44998 * 49.96611 * 22 21 19 44 44 H 1.08992 * 109.46032 * 169.92622 * 22 21 19 45 45 H 1.08992 * 109.69511 * 169.52283 * 23 22 21 46 46 H 1.09001 * 109.69051 * 290.10782 * 23 22 21 47 47 H 1.09005 * 109.58470 * 66.42367 * 30 16 15 48 48 H 1.08990 * 109.59493 * 186.85808 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6164 -2.1915 -0.0011 12 1 5.8663 -1.5446 0.8399 13 6 6.0084 -1.5020 -1.3100 14 6 7.5071 -1.1924 -1.2964 15 6 8.2933 -2.4970 -1.1825 16 7 7.8197 -3.2401 -0.0068 17 6 8.6870 -3.6590 0.9359 18 8 8.2958 -4.3402 1.8600 19 6 10.1427 -3.2811 0.8420 20 1 10.4469 -3.2462 -0.2041 21 6 10.3634 -1.9082 1.4905 22 6 11.8647 -1.6433 1.6315 23 6 12.4521 -2.5708 2.7033 24 6 12.0036 -3.9780 2.4093 25 7 12.4875 -5.1268 2.8704 26 7 11.8036 -6.0958 2.3625 27 7 10.8903 -5.6339 1.5755 28 1 10.2502 -6.1618 1.0729 29 6 10.9783 -4.2928 1.5797 30 6 6.3819 -3.5125 0.1248 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3622 -0.0007 33 1 3.8484 -3.0428 -0.8908 34 1 3.8491 -3.0424 0.8891 35 1 5.7809 -2.1596 -2.1490 36 1 5.4467 -0.5737 -1.4138 37 1 7.7811 -0.6804 -2.2189 38 1 7.7390 -0.5544 -0.4436 39 1 9.3544 -2.2740 -1.0707 40 1 8.1360 -3.0948 -2.0802 41 1 9.9154 -1.1353 0.8659 42 1 9.8979 -1.8931 2.4761 43 1 12.3579 -1.8325 0.6779 44 1 12.0245 -0.6053 1.9230 45 1 13.5405 -2.5192 2.6772 46 1 12.0929 -2.2688 3.6871 47 1 6.0656 -4.1947 -0.6643 48 1 6.1821 -3.9591 1.0987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714079995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:28 Heat of formation + Delta-G solvation = 34.262117 kcal Electronic energy + Delta-G solvation = -29388.499550 eV Core-core repulsion = 25478.968857 eV Total energy + Delta-G solvation = -3909.530693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.55645 -41.51715 -39.13889 -37.78382 -36.78179 -34.95091 -34.43014 -33.10918 -32.33745 -31.35532 -31.13949 -27.55969 -26.79984 -25.40188 -24.44303 -23.90494 -23.65364 -23.13422 -21.58066 -20.73559 -20.15080 -19.70552 -18.92501 -18.57579 -17.22894 -16.98945 -16.50823 -16.40008 -15.91375 -15.89490 -15.58295 -15.31061 -15.07581 -14.91373 -14.83638 -14.64528 -14.54838 -13.99601 -13.87093 -13.74367 -13.57340 -13.22444 -12.84450 -12.73148 -12.69479 -12.45323 -12.35459 -12.21975 -12.06697 -11.96583 -11.89884 -11.78108 -11.64103 -11.52386 -11.38029 -11.34916 -10.98039 -10.82896 -9.95789 -9.72629 -9.31818 -8.04500 -5.38674 0.46167 1.35483 1.35900 1.40647 1.40809 1.48145 1.73923 1.87148 2.47183 3.08556 3.26545 3.36150 3.45485 3.55492 3.71814 3.74142 3.88505 3.92815 4.02588 4.04529 4.23784 4.24762 4.30275 4.32537 4.41738 4.45555 4.59884 4.63273 4.65759 4.76925 4.84607 4.87657 4.92224 4.95981 4.97177 5.09640 5.18482 5.18731 5.23464 5.31606 5.36126 5.41847 5.45133 5.51741 5.73205 5.81881 6.19224 6.30825 6.97976 7.05901 7.34953 7.81113 8.01466 9.17207 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002593 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.343043 B =10795.347290 C =11220.627095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.238 4.238 8 H 0.052 0.948 9 N -0.754 5.754 10 C 0.160 3.840 11 C -0.096 4.096 12 H 0.062 0.938 13 C -0.115 4.115 14 C -0.130 4.130 15 C 0.096 3.904 16 N -0.597 5.597 17 C 0.513 3.487 18 O -0.583 6.583 19 C -0.025 4.025 20 H 0.155 0.845 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.040 4.040 24 C -0.022 4.022 25 N -0.295 5.295 26 N -0.119 5.119 27 N -0.362 5.362 28 H 0.455 0.545 29 C 0.009 3.991 30 C 0.126 3.874 31 H 0.258 0.742 32 H 0.367 0.633 33 H 0.031 0.969 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.842 -1.611 -5.481 31.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.071 0.929 9 N -0.400 5.400 10 C 0.033 3.967 11 C -0.116 4.116 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.168 4.168 15 C -0.025 4.025 16 N -0.328 5.328 17 C 0.301 3.699 18 O -0.463 6.463 19 C -0.048 4.048 20 H 0.172 0.828 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.079 4.079 24 C -0.163 4.163 25 N -0.159 5.159 26 N -0.097 5.097 27 N -0.082 5.082 28 H 0.302 0.698 29 C -0.129 4.129 30 C 0.002 3.998 31 H 0.067 0.933 32 H 0.201 0.799 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.198 -3.354 -4.325 31.675 hybrid contribution -1.794 0.912 -0.220 2.025 sum 29.404 -2.442 -4.545 29.853 Atomic orbital electron populations 1.69899 1.07294 1.26815 1.59549 1.25584 0.96183 1.01552 1.02455 0.85352 0.78534 0.79127 0.78433 1.19643 1.22414 1.17614 1.19029 0.82829 0.93427 1.41609 0.92947 1.42638 1.02324 1.04077 1.90938 1.20712 0.90460 0.87508 0.98022 1.21537 0.93240 0.97239 0.99600 0.91926 1.21563 0.97251 1.00474 0.95991 1.21868 0.93282 0.97354 1.04252 1.22175 1.00527 0.92622 0.87142 1.48171 1.06573 1.55189 1.22827 1.20895 0.88687 0.79217 0.81129 1.90753 1.80112 1.40423 1.35057 1.20215 0.87644 0.94049 1.02906 0.82765 1.21695 0.99084 0.92251 1.01529 1.21651 0.92834 1.00468 0.99494 1.20226 1.02287 0.84619 1.00750 1.22334 0.97323 0.97396 0.99231 1.74774 1.22463 0.97637 1.21058 1.78511 1.01556 1.21972 1.07696 1.44683 1.25103 1.06671 1.31696 0.69769 1.21622 1.01466 0.84792 1.04995 1.21406 0.79424 0.96075 1.02872 0.93280 0.79886 0.95072 0.96901 0.91031 0.92999 0.87762 0.91261 0.86014 0.89071 0.86950 0.92630 0.89050 0.87533 0.88447 0.89984 0.89809 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.15 13.97 21.66 0.30 -62.84 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.96 44.31 27.73 68.60 1.90 46.21 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 7 C -0.24 -13.57 10.47 84.04 0.88 -12.69 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.75 -34.30 5.12 -343.44 -1.76 -36.06 16 10 C 0.16 5.81 5.65 86.38 0.49 6.29 16 11 C -0.10 -2.49 2.37 -10.71 -0.03 -2.51 16 12 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.12 -2.35 5.06 30.62 0.15 -2.20 16 14 C -0.13 -1.40 6.06 30.52 0.19 -1.21 16 15 C 0.10 0.71 6.24 86.22 0.54 1.25 16 16 N -0.60 -9.31 2.98 -819.77 -2.44 -11.75 16 17 C 0.51 9.39 6.77 87.66 0.59 9.98 16 18 O -0.58 -16.68 15.49 -3.03 -0.05 -16.73 16 19 C -0.03 -0.28 2.05 -12.20 -0.03 -0.30 16 20 H 0.16 0.45 6.28 -2.39 -0.01 0.43 16 21 C -0.11 -0.87 5.15 30.77 0.16 -0.71 16 22 C -0.11 -0.52 5.90 30.77 0.18 -0.34 16 23 C -0.04 -0.46 6.30 29.96 0.19 -0.27 16 24 C -0.02 -0.43 7.11 41.75 0.30 -0.13 16 25 N -0.29 -7.84 12.40 -48.99 -0.61 -8.44 16 26 N -0.12 -3.11 13.40 37.02 0.50 -2.62 16 27 N -0.36 -7.30 6.66 -48.27 -0.32 -7.62 16 28 H 0.46 7.08 8.96 -219.68 -1.97 5.12 16 29 C 0.01 0.16 5.94 41.50 0.25 0.40 16 30 C 0.13 2.76 5.71 86.36 0.49 3.26 16 31 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.37 15.67 4.72 -92.71 -0.44 15.23 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.31 7.16 -2.39 -0.02 1.29 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 0.04 5.19 -2.39 -0.01 0.03 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.11 0.38 7.89 -2.38 -0.02 0.36 16 42 H 0.05 0.76 8.08 -2.38 -0.02 0.75 16 43 H 0.09 0.16 8.12 -2.38 -0.02 0.14 16 44 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 48 H 0.07 1.89 7.03 -2.39 -0.02 1.88 16 Total: -1.00 -83.94 374.15 0.87 -83.06 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -1.47 Total: 19.41 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 4.82 Total: -2.61 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -4.33 Total: -129.34 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.73 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Total: -83.94 0.87 -83.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714079995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.323 kcal (2) G-P(sol) polarization free energy of solvation -83.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds