Wall clock time and date at job start Tue Mar 31 2020 18:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48502 * 109.46841 * 274.94826 * 3 2 1 5 5 H 1.48498 * 109.47084 * 34.94680 * 3 2 1 6 6 H 1.48497 * 109.47345 * 154.94875 * 3 2 1 7 7 C 1.38812 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00105 * 185.52492 * 7 2 1 9 9 N 1.36936 * 119.99728 * 5.52217 * 7 2 1 10 10 C 1.46508 * 119.99833 * 175.39173 * 9 7 2 11 11 C 1.53003 * 110.01339 * 297.42645 * 10 9 7 12 12 N 1.46495 * 109.46794 * 60.58752 * 11 10 9 13 13 C 1.34773 * 120.00481 * 87.89637 * 12 11 10 14 14 O 1.21285 * 119.99537 * 4.97940 * 13 12 11 15 15 C 1.50701 * 120.00354 * 184.98191 * 13 12 11 16 16 H 1.08992 * 109.69119 * 30.94163 * 15 13 12 17 17 C 1.53435 * 109.69184 * 151.48739 * 15 13 12 18 18 C 1.53108 * 109.55856 * 169.43761 * 17 15 13 19 19 C 1.53418 * 109.58294 * 289.95185 * 18 17 15 20 20 C 1.50597 * 108.33582 * 49.81477 * 19 18 17 21 21 N 1.32912 * 129.15895 * 163.42906 * 20 19 18 22 22 N 1.29027 * 108.63273 * 180.09418 * 21 20 19 23 23 N 1.29111 * 110.25781 * 0.02562 * 22 21 20 24 24 H 0.97001 * 126.00375 * 179.97438 * 23 22 21 25 25 C 1.34400 * 107.98624 * 359.91796 * 23 22 21 26 26 C 1.54256 * 110.03257 * 58.81947 * 10 9 7 27 27 C 1.54965 * 104.16036 * 95.75933 * 26 10 9 28 28 C 1.54882 * 102.77978 * 37.88461 * 27 26 10 29 29 C 1.53879 * 110.03061 * 176.04046 * 10 9 7 30 30 H 0.97004 * 119.99691 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00166 * 355.38764 * 9 7 2 32 32 H 1.08998 * 109.47422 * 300.58599 * 11 10 9 33 33 H 1.08997 * 109.46903 * 180.58219 * 11 10 9 34 34 H 0.97005 * 120.00101 * 267.62040 * 12 11 10 35 35 H 1.09002 * 109.45850 * 289.46359 * 17 15 13 36 36 H 1.09003 * 109.46216 * 49.42722 * 17 15 13 37 37 H 1.09002 * 109.44948 * 49.98038 * 18 17 15 38 38 H 1.08992 * 109.45507 * 169.91156 * 18 17 15 39 39 H 1.09002 * 109.69295 * 169.52714 * 19 18 17 40 40 H 1.09000 * 109.69250 * 290.06494 * 19 18 17 41 41 H 1.09004 * 110.48619 * 214.39907 * 26 10 9 42 42 H 1.08999 * 110.49216 * 337.04863 * 26 10 9 43 43 H 1.09005 * 110.71745 * 279.56931 * 27 26 10 44 44 H 1.09000 * 110.92704 * 156.29806 * 27 26 10 45 45 H 1.08997 * 110.48723 * 203.41150 * 28 27 26 46 46 H 1.08994 * 110.60165 * 80.81705 * 28 27 26 47 47 H 1.08997 * 110.03372 * 359.94733 * 29 10 9 48 48 H 1.08999 * 110.03199 * 121.32854 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3931 2.1067 -1.3949 5 1 1.5039 2.6202 0.8020 6 1 3.5961 1.4122 0.5928 7 6 2.0102 -1.2021 -0.0005 8 1 3.0864 -1.2044 0.0895 9 7 1.3302 -2.3852 -0.1152 10 6 2.0677 -3.6470 -0.2174 11 6 2.9208 -3.6535 -1.4875 12 7 3.8825 -2.5496 -1.4353 13 6 5.0832 -2.7289 -0.8499 14 8 5.4033 -3.8271 -0.4469 15 6 6.0278 -1.5648 -0.6959 16 1 5.4584 -0.6430 -0.5779 17 6 6.9203 -1.7823 0.5331 18 6 8.0452 -0.7437 0.5398 19 6 9.0317 -1.0468 -0.5955 20 6 8.2471 -1.2358 -1.8669 21 7 8.6724 -1.2182 -3.1261 22 7 7.6639 -1.4219 -3.9047 23 7 6.5862 -1.5733 -3.2100 24 1 5.6981 -1.7379 -3.5639 25 6 6.9113 -1.4641 -1.9105 26 6 2.9650 -3.8366 1.0229 27 6 2.1188 -4.7233 1.9711 28 6 1.4204 -5.7008 0.9935 29 6 1.0856 -4.8315 -0.2361 30 1 -0.4850 0.8401 0.0004 31 1 0.3603 -2.3879 -0.1287 32 1 2.2767 -3.5333 -2.3586 33 1 3.4573 -4.5995 -1.5600 34 1 3.6568 -1.6908 -1.8257 35 1 6.3231 -1.6765 1.4388 36 1 7.3506 -2.7831 0.4969 37 1 7.6221 0.2506 0.3971 38 1 8.5685 -0.7816 1.4952 39 1 9.7248 -0.2137 -0.7120 40 1 9.5864 -1.9568 -0.3668 41 1 3.8901 -4.3446 0.7504 42 1 3.1798 -2.8750 1.4891 43 1 1.3841 -4.1226 2.5073 44 1 2.7563 -5.2652 2.6696 45 1 0.5087 -6.0991 1.4387 46 1 2.0938 -6.5115 0.7155 47 1 0.0604 -4.4676 -0.1682 48 1 1.2162 -5.4104 -1.1504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714502029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:11 Heat of formation + Delta-G solvation = 56.406596 kcal Electronic energy + Delta-G solvation = -30854.049689 eV Core-core repulsion = 26945.479252 eV Total energy + Delta-G solvation = -3908.570436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54464 -40.00268 -38.09342 -36.65119 -34.37417 -33.89383 -33.20769 -30.97892 -30.38991 -30.18406 -28.40518 -27.70167 -25.24417 -23.96813 -23.40885 -23.05814 -22.57681 -20.41301 -20.25869 -19.60100 -18.68012 -18.26128 -17.21061 -16.96204 -16.13316 -15.96953 -15.46131 -15.04067 -14.69866 -14.47440 -14.20235 -13.96986 -13.87663 -13.68067 -13.47507 -13.25768 -12.75692 -12.48710 -12.25511 -11.93375 -11.65684 -11.55160 -11.48258 -11.31356 -11.11413 -11.04698 -10.87730 -10.77015 -10.65300 -10.64203 -10.44625 -10.39633 -10.33376 -10.12347 -10.07052 -9.81594 -9.55262 -9.00132 -8.88705 -8.38771 -7.05921 -5.92705 -3.18534 1.45024 2.43208 2.57456 2.77707 3.24585 3.28069 3.35937 3.52250 4.14416 4.41019 4.47317 4.59972 4.77588 4.82779 5.09357 5.19395 5.21461 5.24698 5.26379 5.29500 5.34170 5.48020 5.49789 5.65784 5.78040 5.81205 5.85681 5.90975 5.92735 5.97113 6.03940 6.09646 6.16351 6.18725 6.24827 6.26522 6.30862 6.39992 6.53466 6.72001 6.75557 6.76936 6.88543 7.04648 7.12995 7.56463 7.84233 8.27982 8.36505 8.49240 9.36981 9.99596 10.35472 11.29946 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.005037 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.547653 B = 5557.234660 C = 6777.122290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.889 3.111 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.713 5.713 10 C 0.185 3.815 11 C 0.111 3.889 12 N -0.700 5.700 13 C 0.511 3.489 14 O -0.534 6.534 15 C -0.037 4.037 16 H 0.114 0.886 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.033 4.033 20 C -0.010 4.010 21 N -0.260 5.260 22 N -0.088 5.088 23 N -0.379 5.379 24 H 0.448 0.552 25 C 0.005 3.995 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.120 4.120 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.405 0.595 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -5.236 -0.438 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.720 3.280 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.092 3.908 11 C -0.015 4.015 12 N -0.349 5.349 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.061 4.061 16 H 0.132 0.868 17 C -0.138 4.138 18 C -0.158 4.158 19 C -0.072 4.072 20 C -0.150 4.150 21 N -0.126 5.126 22 N -0.067 5.067 23 N -0.098 5.098 24 H 0.294 0.706 25 C -0.131 4.131 26 C -0.180 4.180 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.159 4.159 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.090 -5.805 -1.569 12.615 hybrid contribution -1.409 1.460 0.538 2.099 sum 9.681 -4.345 -1.031 10.661 Atomic orbital electron populations 1.69657 1.05062 1.25572 1.57019 1.24755 0.95370 0.97395 1.03292 0.86454 0.79026 0.84941 0.77544 1.21816 1.21717 1.20550 1.19275 0.91645 0.83939 1.41857 0.90652 1.42598 1.05350 1.00164 1.87345 1.20622 0.90897 0.86913 0.92338 1.22222 0.90329 0.88986 0.99949 1.46040 1.14548 1.16607 1.57698 1.20095 0.82330 0.89349 0.78657 1.90612 1.75931 1.25528 1.49116 1.20066 0.94884 0.99669 0.91467 0.86837 1.21498 0.96082 1.00978 0.95249 1.21678 0.96198 0.99536 0.98430 1.20000 0.96577 1.02988 0.87643 1.21687 0.91560 1.06857 0.94932 1.74806 1.21101 1.16049 1.00602 1.78548 0.88111 1.20091 1.19947 1.44720 1.12075 1.47850 1.05138 0.70636 1.21463 0.96843 1.08558 0.86227 1.23134 0.98568 0.99772 0.96502 1.22396 0.98774 0.97140 0.97281 1.22279 0.99526 0.97629 0.96265 1.22307 0.99817 0.96213 0.97534 0.93492 0.78286 0.91094 0.91241 0.75913 0.89825 0.89563 0.91174 0.90018 0.89698 0.89706 0.90329 0.91525 0.91943 0.93071 0.92602 0.92348 0.91337 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.46 13.07 55.49 0.73 -24.74 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.89 19.82 29.56 -169.99 -5.02 14.80 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.24 -5.43 7.33 -15.06 -0.11 -5.54 16 8 H 0.08 1.64 5.42 -52.49 -0.28 1.35 16 9 N -0.71 -15.27 5.17 -46.19 -0.24 -15.51 16 10 C 0.18 3.23 0.95 -130.70 -0.12 3.11 16 11 C 0.11 1.75 5.06 -4.04 -0.02 1.73 16 12 N -0.70 -10.51 3.14 -60.30 -0.19 -10.70 16 13 C 0.51 7.76 5.66 -10.99 -0.06 7.70 16 14 O -0.53 -9.39 12.98 5.55 0.07 -9.32 16 15 C -0.04 -0.49 2.89 -92.78 -0.27 -0.76 16 16 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 17 C -0.10 -1.18 4.99 -26.45 -0.13 -1.31 16 18 C -0.12 -1.15 5.90 -26.46 -0.16 -1.31 16 19 C -0.03 -0.34 6.30 -27.72 -0.17 -0.51 16 20 C -0.01 -0.14 7.11 -83.12 -0.59 -0.73 16 21 N -0.26 -4.04 12.40 33.16 0.41 -3.63 16 22 N -0.09 -1.33 13.40 60.35 0.81 -0.52 16 23 N -0.38 -4.92 6.92 33.39 0.23 -4.69 16 24 H 0.45 4.69 8.96 -190.07 -1.70 2.98 16 25 C 0.01 0.07 6.43 -82.50 -0.53 -0.46 16 26 C -0.14 -2.52 4.83 -25.04 -0.12 -2.64 16 27 C -0.12 -1.92 6.91 -24.70 -0.17 -2.09 16 28 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 29 C -0.12 -1.86 6.25 -25.61 -0.16 -2.02 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.38 9.10 7.28 -40.82 -0.30 8.80 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.09 7.42 -51.93 -0.39 0.70 16 34 H 0.41 5.98 7.78 -40.82 -0.32 5.66 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.10 7.46 -51.93 -0.39 0.71 16 37 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.44 5.11 -51.93 -0.27 1.18 16 42 H 0.07 1.37 6.83 -51.93 -0.35 1.01 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.12 7.45 -51.93 -0.39 0.73 16 48 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -29.49 370.12 -9.08 -38.58 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -8.56 Total: 17.26 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.89 Total: -7.11 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 1.75 Total: -59.79 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.49 -9.08 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714502029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.982 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds