Wall clock time and date at job start Tue Mar 31 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48502 * 109.46841 * 274.94826 * 3 2 1 5 5 H 1.48498 * 109.47084 * 34.94680 * 3 2 1 6 6 H 1.48497 * 109.47345 * 154.94875 * 3 2 1 7 7 C 1.38812 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00105 * 185.52492 * 7 2 1 9 9 N 1.36936 * 119.99728 * 5.52217 * 7 2 1 10 10 C 1.46508 * 119.99833 * 175.39173 * 9 7 2 11 11 C 1.53003 * 110.01339 * 297.42645 * 10 9 7 12 12 N 1.46495 * 109.46794 * 60.58752 * 11 10 9 13 13 C 1.34773 * 120.00481 * 87.89637 * 12 11 10 14 14 O 1.21285 * 119.99537 * 4.97940 * 13 12 11 15 15 C 1.50701 * 120.00354 * 184.98191 * 13 12 11 16 16 H 1.08992 * 109.69119 * 30.94163 * 15 13 12 17 17 C 1.53435 * 109.69184 * 151.48739 * 15 13 12 18 18 C 1.53108 * 109.55856 * 169.43761 * 17 15 13 19 19 C 1.53418 * 109.58294 * 289.95185 * 18 17 15 20 20 C 1.50597 * 108.33582 * 49.81477 * 19 18 17 21 21 N 1.32912 * 129.15895 * 163.42906 * 20 19 18 22 22 N 1.29027 * 108.63273 * 180.09418 * 21 20 19 23 23 N 1.29111 * 110.25781 * 0.02562 * 22 21 20 24 24 H 0.97001 * 126.00375 * 179.97438 * 23 22 21 25 25 C 1.34400 * 107.98624 * 359.91796 * 23 22 21 26 26 C 1.54256 * 110.03257 * 58.81947 * 10 9 7 27 27 C 1.54965 * 104.16036 * 95.75933 * 26 10 9 28 28 C 1.54882 * 102.77978 * 37.88461 * 27 26 10 29 29 C 1.53879 * 110.03061 * 176.04046 * 10 9 7 30 30 H 0.97004 * 119.99691 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00166 * 355.38764 * 9 7 2 32 32 H 1.08998 * 109.47422 * 300.58599 * 11 10 9 33 33 H 1.08997 * 109.46903 * 180.58219 * 11 10 9 34 34 H 0.97005 * 120.00101 * 267.62040 * 12 11 10 35 35 H 1.09002 * 109.45850 * 289.46359 * 17 15 13 36 36 H 1.09003 * 109.46216 * 49.42722 * 17 15 13 37 37 H 1.09002 * 109.44948 * 49.98038 * 18 17 15 38 38 H 1.08992 * 109.45507 * 169.91156 * 18 17 15 39 39 H 1.09002 * 109.69295 * 169.52714 * 19 18 17 40 40 H 1.09000 * 109.69250 * 290.06494 * 19 18 17 41 41 H 1.09004 * 110.48619 * 214.39907 * 26 10 9 42 42 H 1.08999 * 110.49216 * 337.04863 * 26 10 9 43 43 H 1.09005 * 110.71745 * 279.56931 * 27 26 10 44 44 H 1.09000 * 110.92704 * 156.29806 * 27 26 10 45 45 H 1.08997 * 110.48723 * 203.41150 * 28 27 26 46 46 H 1.08994 * 110.60165 * 80.81705 * 28 27 26 47 47 H 1.08997 * 110.03372 * 359.94733 * 29 10 9 48 48 H 1.08999 * 110.03199 * 121.32854 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3931 2.1067 -1.3949 5 1 1.5039 2.6202 0.8020 6 1 3.5961 1.4122 0.5928 7 6 2.0102 -1.2021 -0.0005 8 1 3.0864 -1.2044 0.0895 9 7 1.3302 -2.3852 -0.1152 10 6 2.0677 -3.6470 -0.2174 11 6 2.9208 -3.6535 -1.4875 12 7 3.8825 -2.5496 -1.4353 13 6 5.0832 -2.7289 -0.8499 14 8 5.4033 -3.8271 -0.4469 15 6 6.0278 -1.5648 -0.6959 16 1 5.4584 -0.6430 -0.5779 17 6 6.9203 -1.7823 0.5331 18 6 8.0452 -0.7437 0.5398 19 6 9.0317 -1.0468 -0.5955 20 6 8.2471 -1.2358 -1.8669 21 7 8.6724 -1.2182 -3.1261 22 7 7.6639 -1.4219 -3.9047 23 7 6.5862 -1.5733 -3.2100 24 1 5.6981 -1.7379 -3.5639 25 6 6.9113 -1.4641 -1.9105 26 6 2.9650 -3.8366 1.0229 27 6 2.1188 -4.7233 1.9711 28 6 1.4204 -5.7008 0.9935 29 6 1.0856 -4.8315 -0.2361 30 1 -0.4850 0.8401 0.0004 31 1 0.3603 -2.3879 -0.1287 32 1 2.2767 -3.5333 -2.3586 33 1 3.4573 -4.5995 -1.5600 34 1 3.6568 -1.6908 -1.8257 35 1 6.3231 -1.6765 1.4388 36 1 7.3506 -2.7831 0.4969 37 1 7.6221 0.2506 0.3971 38 1 8.5685 -0.7816 1.4952 39 1 9.7248 -0.2137 -0.7120 40 1 9.5864 -1.9568 -0.3668 41 1 3.8901 -4.3446 0.7504 42 1 3.1798 -2.8750 1.4891 43 1 1.3841 -4.1226 2.5073 44 1 2.7563 -5.2652 2.6696 45 1 0.5087 -6.0991 1.4387 46 1 2.0938 -6.5115 0.7155 47 1 0.0604 -4.4676 -0.1682 48 1 1.2162 -5.4104 -1.1504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714502029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:10 Heat of formation + Delta-G solvation = 37.189334 kcal Electronic energy + Delta-G solvation = -30854.883012 eV Core-core repulsion = 26945.479252 eV Total energy + Delta-G solvation = -3909.403759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.60912 -41.28439 -39.40668 -37.65525 -35.74609 -35.04456 -34.79684 -32.42245 -31.59118 -31.19871 -29.81377 -29.09091 -26.47925 -25.36056 -24.85516 -24.12977 -23.59792 -21.61437 -21.57257 -20.57518 -20.05746 -19.47104 -18.80148 -18.22850 -17.38604 -17.16761 -16.72269 -16.39598 -15.91495 -15.88361 -15.46071 -15.19714 -14.88203 -14.86026 -14.76875 -14.52855 -14.08349 -13.86022 -13.33902 -13.24896 -13.16407 -12.82872 -12.67770 -12.48679 -12.37229 -12.28684 -12.23144 -12.02585 -11.95854 -11.89618 -11.73846 -11.69070 -11.61125 -11.51383 -11.38111 -11.32561 -10.79902 -10.79675 -9.96528 -9.76522 -8.85662 -7.84698 -5.08543 0.37877 1.35282 1.45361 1.48897 1.50525 1.56866 1.67080 2.32442 2.60164 3.16343 3.44784 3.46892 3.59722 3.76642 3.87149 3.89498 3.93715 4.01447 4.18260 4.25127 4.27122 4.32206 4.42882 4.49042 4.56963 4.61094 4.70714 4.80443 4.89582 4.93912 4.96760 4.97749 5.07115 5.08985 5.15519 5.15806 5.21138 5.29609 5.32607 5.41999 5.45774 5.56489 5.58515 5.67238 5.73916 5.75253 6.38280 6.60156 7.24125 7.28860 7.43820 8.22472 8.47678 9.39613 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.005037 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.547653 B = 5557.234660 C = 6777.122290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.940 3.060 4 H -0.291 1.291 5 H -0.313 1.313 6 H -0.257 1.257 7 C -0.205 4.205 8 H 0.090 0.910 9 N -0.721 5.721 10 C 0.178 3.822 11 C 0.115 3.885 12 N -0.700 5.700 13 C 0.514 3.486 14 O -0.556 6.556 15 C -0.033 4.033 16 H 0.117 0.883 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.033 4.033 20 C -0.014 4.014 21 N -0.284 5.284 22 N -0.106 5.106 23 N -0.370 5.370 24 H 0.457 0.543 25 C 0.000 4.000 26 C -0.132 4.132 27 C -0.119 4.119 28 C -0.112 4.112 29 C -0.120 4.120 30 H 0.243 0.757 31 H 0.369 0.631 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.761 -6.133 -0.146 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.771 3.229 4 H -0.218 1.218 5 H -0.241 1.241 6 H -0.181 1.181 7 C -0.337 4.337 8 H 0.108 0.892 9 N -0.361 5.361 10 C 0.087 3.913 11 C -0.012 4.012 12 N -0.348 5.348 13 C 0.299 3.701 14 O -0.435 6.435 15 C -0.056 4.056 16 H 0.135 0.865 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.072 4.072 20 C -0.154 4.154 21 N -0.150 5.150 22 N -0.085 5.085 23 N -0.090 5.090 24 H 0.304 0.696 25 C -0.137 4.137 26 C -0.171 4.171 27 C -0.157 4.157 28 C -0.149 4.149 29 C -0.158 4.158 30 H 0.052 0.948 31 H 0.201 0.799 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.858 -6.736 -1.298 14.573 hybrid contribution -1.907 1.606 0.470 2.537 sum 10.951 -5.130 -0.828 12.121 Atomic orbital electron populations 1.69815 1.06584 1.25183 1.60549 1.25363 0.95878 1.00188 1.05308 0.85600 0.78790 0.81407 0.77100 1.21827 1.24141 1.18089 1.19637 0.92186 0.84212 1.37699 0.89219 1.42805 1.04898 1.01247 1.87108 1.20889 0.91376 0.86065 0.92984 1.22091 0.90370 0.89585 0.99105 1.46022 1.14601 1.16567 1.57654 1.20413 0.82340 0.89577 0.77737 1.90599 1.76380 1.26588 1.49964 1.20085 0.94698 0.98709 0.92128 0.86517 1.21531 0.96576 1.01357 0.94327 1.21669 0.95327 0.98593 0.99435 1.20179 0.96723 1.04131 0.86201 1.22290 0.91973 1.05773 0.95400 1.74791 1.21601 1.17064 1.01521 1.78502 0.88632 1.20953 1.20415 1.44749 1.12209 1.46989 1.05071 0.69588 1.21548 0.96982 1.08885 0.86243 1.23005 0.98883 0.98518 0.96731 1.22389 0.98436 0.97256 0.97592 1.22260 1.00330 0.97304 0.95036 1.22318 0.98465 0.95726 0.99304 0.94765 0.79853 0.90177 0.90510 0.75694 0.89909 0.90472 0.91010 0.87384 0.88194 0.88678 0.90283 0.94512 0.93909 0.91557 0.91222 0.90613 0.92514 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -54.72 13.07 21.65 0.28 -54.44 16 2 C -0.08 -3.82 5.50 84.86 0.47 -3.36 16 3 Si 0.94 40.78 29.56 68.60 2.03 42.81 16 4 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 7 C -0.21 -9.34 7.33 84.03 0.62 -8.73 16 8 H 0.09 3.78 5.42 -2.91 -0.02 3.76 16 9 N -0.72 -30.68 5.17 -300.06 -1.55 -32.23 16 10 C 0.18 5.99 0.95 4.33 0.00 6.00 16 11 C 0.11 3.39 5.06 86.38 0.44 3.83 16 12 N -0.70 -19.94 3.14 -463.07 -1.45 -21.39 16 13 C 0.51 14.77 5.66 87.66 0.50 15.27 16 14 O -0.56 -18.65 12.98 -3.05 -0.04 -18.69 16 15 C -0.03 -0.80 2.89 -12.19 -0.04 -0.84 16 16 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.10 -2.14 4.99 30.78 0.15 -1.99 16 18 C -0.11 -1.81 5.90 30.77 0.18 -1.62 16 19 C -0.03 -0.60 6.30 29.96 0.19 -0.41 16 20 C -0.01 -0.35 7.11 41.75 0.30 -0.06 16 21 N -0.28 -8.53 12.40 -48.99 -0.61 -9.13 16 22 N -0.11 -3.11 13.40 37.02 0.50 -2.62 16 23 N -0.37 -9.15 6.92 -48.27 -0.33 -9.48 16 24 H 0.46 9.02 8.96 -219.68 -1.97 7.05 16 25 C 0.00 0.00 6.43 41.50 0.27 0.27 16 26 C -0.13 -4.57 4.83 31.69 0.15 -4.42 16 27 C -0.12 -3.69 6.91 31.91 0.22 -3.47 16 28 C -0.11 -2.93 6.83 31.67 0.22 -2.72 16 29 C -0.12 -3.47 6.25 31.32 0.20 -3.28 16 30 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.37 17.76 7.28 -92.71 -0.68 17.08 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 2.21 7.42 -2.39 -0.02 2.20 16 34 H 0.41 11.40 7.78 -92.70 -0.72 10.68 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.82 7.46 -2.39 -0.02 1.80 16 37 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 2.77 5.11 -2.38 -0.01 2.75 16 42 H 0.04 1.47 6.83 -2.39 -0.02 1.46 16 43 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.06 1.80 7.45 -2.39 -0.02 1.78 16 48 H 0.08 1.99 7.67 -2.39 -0.02 1.97 16 Total: -1.00 -63.77 370.12 0.33 -63.44 By element: Atomic # 1 Polarization: 49.59 SS G_CDS: -2.34 Total: 47.25 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 3.86 Total: -5.51 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -3.17 Total: -129.29 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.04 Total: -18.69 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -63.77 0.33 -63.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714502029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.629 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds