Wall clock time and date at job start Tue Mar 31 2020 18:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48501 * 109.46998 * 267.50218 * 3 2 1 5 5 H 1.48497 * 109.46882 * 27.50072 * 3 2 1 6 6 H 1.48501 * 109.47304 * 147.50350 * 3 2 1 7 7 C 1.38814 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99623 * 4.01802 * 7 2 1 9 9 N 1.36935 * 120.00513 * 184.01747 * 7 2 1 10 10 C 1.46502 * 120.00421 * 186.15465 * 9 7 2 11 11 C 1.53001 * 109.47046 * 182.74659 * 10 9 7 12 12 N 1.46499 * 110.53700 * 65.42902 * 11 10 9 13 13 C 1.34774 * 120.00326 * 57.17377 * 12 11 10 14 14 O 1.21280 * 119.99775 * 4.51979 * 13 12 11 15 15 C 1.50705 * 119.99967 * 184.51287 * 13 12 11 16 16 H 1.08998 * 109.68902 * 328.86136 * 15 13 12 17 17 C 1.53432 * 109.69406 * 208.31077 * 15 13 12 18 18 C 1.53107 * 109.55628 * 190.57068 * 17 15 13 19 19 C 1.53417 * 109.58187 * 70.05105 * 18 17 15 20 20 C 1.50601 * 108.33763 * 310.17726 * 19 18 17 21 21 N 1.32911 * 129.16553 * 196.57022 * 20 19 18 22 22 N 1.29015 * 108.63652 * 179.85575 * 21 20 19 23 23 N 1.29109 * 110.25743 * 0.02964 * 22 21 20 24 24 H 0.96998 * 126.00698 * 180.02562 * 23 22 21 25 25 C 1.34393 * 107.98723 * 0.06354 * 23 22 21 26 26 C 1.54888 * 110.48134 * 188.03433 * 11 10 9 27 27 C 1.54891 * 102.74654 * 156.62135 * 26 11 10 28 28 C 1.54265 * 104.19771 * 322.06082 * 27 26 11 29 29 C 1.53881 * 106.59723 * 23.60548 * 28 27 26 30 30 H 0.97000 * 120.00247 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99697 * 6.15742 * 9 7 2 32 32 H 1.09007 * 109.46683 * 62.74813 * 10 9 7 33 33 H 1.08998 * 109.46821 * 302.74870 * 10 9 7 34 34 H 0.97003 * 119.99541 * 237.17633 * 12 11 10 35 35 H 1.09008 * 109.45404 * 310.59374 * 17 15 13 36 36 H 1.08996 * 109.45943 * 70.54023 * 17 15 13 37 37 H 1.08997 * 109.45200 * 190.09411 * 18 17 15 38 38 H 1.09007 * 109.44786 * 310.01792 * 18 17 15 39 39 H 1.08999 * 109.69169 * 69.89055 * 19 18 17 40 40 H 1.08996 * 109.68931 * 190.42947 * 19 18 17 41 41 H 1.08994 * 110.76200 * 274.93653 * 26 11 10 42 42 H 1.09007 * 110.75585 * 38.31258 * 26 11 10 43 43 H 1.09003 * 110.49129 * 203.38287 * 27 26 11 44 44 H 1.08996 * 110.48590 * 80.73492 * 27 26 11 45 45 H 1.09004 * 110.03319 * 264.32872 * 28 27 26 46 46 H 1.08997 * 110.07943 * 142.91082 * 28 27 26 47 47 H 1.08996 * 110.03057 * 240.71914 * 29 28 27 48 48 H 1.09007 * 110.07139 * 119.30678 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5505 2.0158 -1.3988 5 1 1.4222 2.6673 0.6465 6 1 3.5203 1.4560 0.7522 7 6 2.0102 -1.2022 0.0005 8 1 1.4721 -2.1364 -0.0646 9 7 3.3770 -1.2037 0.0836 10 6 4.1178 -2.4604 -0.0513 11 6 5.6116 -2.1958 0.1476 12 7 5.8778 -1.7589 1.5204 13 6 5.5128 -2.5375 2.5582 14 8 5.0389 -3.6353 2.3554 15 6 5.6939 -2.0440 3.9706 16 1 6.5598 -1.3840 4.0209 17 6 5.8979 -3.2374 4.9131 18 6 5.8180 -2.7623 6.3664 19 6 4.3730 -2.3695 6.7002 20 6 3.8723 -1.4447 5.6222 21 7 2.8201 -0.6327 5.6348 22 7 2.7595 -0.0188 4.5017 23 7 3.7309 -0.3930 3.7380 24 1 3.9030 -0.0761 2.8376 25 6 4.4613 -1.2995 4.4096 26 6 6.4359 -3.4636 -0.1872 27 6 7.8315 -2.8840 -0.5270 28 6 7.5237 -1.5792 -1.2901 29 6 6.1121 -1.1416 -0.8612 30 1 -0.4850 0.8400 0.0004 31 1 3.8548 -0.3725 0.2318 32 1 3.9515 -2.8752 -1.0455 33 1 3.7710 -3.1690 0.7008 34 1 6.3167 -0.9091 1.6824 35 1 5.1216 -3.9808 4.7309 36 1 6.8760 -3.6819 4.7296 37 1 6.1381 -3.5661 7.0292 38 1 6.4695 -1.8990 6.5023 39 1 3.7489 -3.2623 6.7373 40 1 4.3440 -1.8609 7.6638 41 1 6.4927 -4.1266 0.6760 42 1 6.0134 -3.9830 -1.0474 43 1 8.3874 -3.5747 -1.1610 44 1 8.3881 -2.6700 0.3854 45 1 7.5479 -1.7605 -2.3647 46 1 8.2495 -0.8105 -1.0250 47 1 5.4515 -1.1106 -1.7276 48 1 6.1524 -0.1608 -0.3873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715099037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:02 Heat of formation + Delta-G solvation = 56.239838 kcal Electronic energy + Delta-G solvation = -31046.407322 eV Core-core repulsion = 27137.829655 eV Total energy + Delta-G solvation = -3908.577668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30834 -40.46754 -38.26113 -36.57444 -34.59704 -33.86363 -33.24167 -31.46002 -30.51655 -30.07586 -28.81146 -28.51235 -25.01384 -24.53057 -23.04258 -22.68205 -22.13515 -21.27063 -20.17314 -19.55058 -19.38897 -18.21477 -17.76539 -17.13031 -16.12692 -15.95112 -15.49046 -15.16320 -14.70162 -14.55949 -14.43921 -14.10775 -13.98019 -13.72390 -13.66440 -13.31472 -12.99056 -12.72498 -12.36189 -12.24740 -11.93021 -11.70648 -11.47665 -11.35469 -11.30978 -11.26341 -11.14380 -11.12262 -11.02364 -10.79674 -10.70133 -10.60257 -10.51796 -10.30220 -10.20189 -9.67439 -9.65029 -8.94122 -8.89969 -8.73144 -7.27497 -5.80949 -3.17309 1.68605 2.55831 2.72038 2.90970 3.11766 3.12603 3.29290 3.37661 4.22365 4.40942 4.42804 4.49010 4.58821 4.60682 4.62006 4.80177 4.84252 5.02452 5.09145 5.22144 5.25144 5.35667 5.36479 5.44020 5.49902 5.54550 5.58085 5.67859 5.70403 5.74609 5.77288 5.78648 5.88995 5.90310 6.00182 6.03745 6.10988 6.16316 6.25597 6.28188 6.30127 6.37813 6.67525 6.88037 7.00478 7.49862 7.96043 8.23582 8.37767 8.66677 9.15119 9.85777 10.05855 11.37837 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.006690 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.155716 B = 4184.361869 C = 6585.312699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.147 3.853 11 C 0.164 3.836 12 N -0.716 5.716 13 C 0.518 3.482 14 O -0.511 6.511 15 C -0.029 4.029 16 H 0.105 0.895 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.033 4.033 20 C -0.010 4.010 21 N -0.265 5.265 22 N -0.065 5.065 23 N -0.363 5.363 24 H 0.450 0.550 25 C -0.015 4.015 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.124 4.124 29 C -0.125 4.125 30 H 0.260 0.740 31 H 0.354 0.646 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.478 -4.464 7.135 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.187 4.187 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.019 3.981 11 C 0.078 3.922 12 N -0.368 5.368 13 C 0.303 3.697 14 O -0.385 6.385 15 C -0.053 4.053 16 H 0.123 0.877 17 C -0.139 4.139 18 C -0.155 4.155 19 C -0.072 4.072 20 C -0.151 4.151 21 N -0.130 5.130 22 N -0.044 5.044 23 N -0.082 5.082 24 H 0.296 0.704 25 C -0.151 4.151 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.071 0.929 31 H 0.186 0.814 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.530 -4.448 7.177 21.277 hybrid contribution 1.626 1.503 -0.878 2.382 sum 21.156 -2.945 6.299 22.269 Atomic orbital electron populations 1.69670 1.05001 1.25772 1.56905 1.24683 0.95159 0.96770 1.02066 0.86652 0.78218 0.85929 0.77629 1.20958 1.21464 1.21896 1.19016 0.80650 0.94650 1.43091 0.89340 1.42626 1.04263 1.03641 1.89236 1.21092 0.87092 0.90226 0.99660 1.21510 0.96302 0.94428 0.79919 1.46108 1.61725 1.22951 1.05992 1.20219 0.78036 0.85488 0.85997 1.90691 1.42250 1.20266 1.85273 1.19933 0.93838 0.97917 0.93596 0.87747 1.21516 1.03806 0.95696 0.92894 1.21638 0.96114 1.01676 0.96023 1.19966 0.95572 0.96723 0.94959 1.21636 0.95313 1.02086 0.96026 1.74856 1.17214 1.08139 1.12827 1.78699 1.07751 1.20597 0.97374 1.44818 1.18615 1.28248 1.16563 0.70369 1.21229 0.99868 0.99261 0.94774 1.22797 0.94293 0.96871 1.02314 1.22342 0.97290 0.96604 0.99664 1.22164 0.96328 0.97304 1.00358 1.22442 0.96673 0.97725 0.99506 0.92919 0.81389 0.94797 0.92793 0.77284 0.89322 0.90335 0.90184 0.91403 0.89702 0.89742 0.90096 0.90419 0.91809 0.92027 0.91638 0.92111 0.89299 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.62 27.82 -169.99 -4.73 16.89 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -6.26 6.42 56.52 0.36 -5.90 16 7 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 9 N -0.75 -16.66 5.10 -59.90 -0.31 -16.97 16 10 C 0.15 2.80 4.96 -4.04 -0.02 2.78 16 11 C 0.16 2.27 0.42 -130.16 -0.05 2.22 16 12 N -0.72 -8.82 5.06 -46.08 -0.23 -9.05 16 13 C 0.52 7.15 6.22 -10.98 -0.07 7.08 16 14 O -0.51 -8.84 12.60 5.56 0.07 -8.77 16 15 C -0.03 -0.33 2.90 -92.77 -0.27 -0.60 16 16 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.10 -0.97 4.99 -26.45 -0.13 -1.10 16 18 C -0.12 -0.92 5.90 -26.46 -0.16 -1.08 16 19 C -0.03 -0.35 6.30 -27.72 -0.17 -0.53 16 20 C -0.01 -0.15 7.11 -83.12 -0.59 -0.75 16 21 N -0.27 -5.04 12.40 33.16 0.41 -4.63 16 22 N -0.06 -1.33 13.40 60.35 0.81 -0.52 16 23 N -0.36 -6.43 6.92 33.39 0.23 -6.20 16 24 H 0.45 7.88 8.96 -190.08 -1.70 6.18 16 25 C -0.01 -0.22 6.43 -82.50 -0.53 -0.75 16 26 C -0.12 -1.52 5.72 -24.74 -0.14 -1.66 16 27 C -0.12 -1.16 6.79 -25.07 -0.17 -1.33 16 28 C -0.12 -1.19 6.80 -25.61 -0.17 -1.37 16 29 C -0.13 -1.54 5.17 -25.61 -0.13 -1.68 16 30 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 31 H 0.35 7.40 4.99 -40.82 -0.20 7.20 16 32 H 0.03 0.67 8.07 -51.92 -0.42 0.25 16 33 H 0.05 1.19 6.08 -51.93 -0.32 0.87 16 34 H 0.39 3.81 8.29 -40.82 -0.34 3.47 16 35 H 0.09 1.07 7.46 -51.92 -0.39 0.68 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.09 6.50 -51.93 -0.34 0.76 16 42 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 1.25 7.84 -51.93 -0.41 0.84 16 48 H 0.06 0.76 7.77 -51.93 -0.40 0.36 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -34.93 375.29 -8.94 -43.86 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -8.75 Total: 13.78 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.87 Total: -5.55 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 1.69 Total: -65.87 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.73 Total: 16.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.93 -8.94 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715099037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.104 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds