Wall clock time and date at job start Tue Mar 31 2020 18:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48501 * 109.46998 * 267.50218 * 3 2 1 5 5 H 1.48497 * 109.46882 * 27.50072 * 3 2 1 6 6 H 1.48501 * 109.47304 * 147.50350 * 3 2 1 7 7 C 1.38814 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99623 * 4.01802 * 7 2 1 9 9 N 1.36935 * 120.00513 * 184.01747 * 7 2 1 10 10 C 1.46502 * 120.00421 * 186.15465 * 9 7 2 11 11 C 1.53001 * 109.47046 * 182.74659 * 10 9 7 12 12 N 1.46499 * 110.53700 * 65.42902 * 11 10 9 13 13 C 1.34774 * 120.00326 * 57.17377 * 12 11 10 14 14 O 1.21280 * 119.99775 * 4.51979 * 13 12 11 15 15 C 1.50705 * 119.99967 * 184.51287 * 13 12 11 16 16 H 1.08998 * 109.68902 * 328.86136 * 15 13 12 17 17 C 1.53432 * 109.69406 * 208.31077 * 15 13 12 18 18 C 1.53107 * 109.55628 * 190.57068 * 17 15 13 19 19 C 1.53417 * 109.58187 * 70.05105 * 18 17 15 20 20 C 1.50601 * 108.33763 * 310.17726 * 19 18 17 21 21 N 1.32911 * 129.16553 * 196.57022 * 20 19 18 22 22 N 1.29015 * 108.63652 * 179.85575 * 21 20 19 23 23 N 1.29109 * 110.25743 * 0.02964 * 22 21 20 24 24 H 0.96998 * 126.00698 * 180.02562 * 23 22 21 25 25 C 1.34393 * 107.98723 * 0.06354 * 23 22 21 26 26 C 1.54888 * 110.48134 * 188.03433 * 11 10 9 27 27 C 1.54891 * 102.74654 * 156.62135 * 26 11 10 28 28 C 1.54265 * 104.19771 * 322.06082 * 27 26 11 29 29 C 1.53881 * 106.59723 * 23.60548 * 28 27 26 30 30 H 0.97000 * 120.00247 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99697 * 6.15742 * 9 7 2 32 32 H 1.09007 * 109.46683 * 62.74813 * 10 9 7 33 33 H 1.08998 * 109.46821 * 302.74870 * 10 9 7 34 34 H 0.97003 * 119.99541 * 237.17633 * 12 11 10 35 35 H 1.09008 * 109.45404 * 310.59374 * 17 15 13 36 36 H 1.08996 * 109.45943 * 70.54023 * 17 15 13 37 37 H 1.08997 * 109.45200 * 190.09411 * 18 17 15 38 38 H 1.09007 * 109.44786 * 310.01792 * 18 17 15 39 39 H 1.08999 * 109.69169 * 69.89055 * 19 18 17 40 40 H 1.08996 * 109.68931 * 190.42947 * 19 18 17 41 41 H 1.08994 * 110.76200 * 274.93653 * 26 11 10 42 42 H 1.09007 * 110.75585 * 38.31258 * 26 11 10 43 43 H 1.09003 * 110.49129 * 203.38287 * 27 26 11 44 44 H 1.08996 * 110.48590 * 80.73492 * 27 26 11 45 45 H 1.09004 * 110.03319 * 264.32872 * 28 27 26 46 46 H 1.08997 * 110.07943 * 142.91082 * 28 27 26 47 47 H 1.08996 * 110.03057 * 240.71914 * 29 28 27 48 48 H 1.09007 * 110.07139 * 119.30678 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5505 2.0158 -1.3988 5 1 1.4222 2.6673 0.6465 6 1 3.5203 1.4560 0.7522 7 6 2.0102 -1.2022 0.0005 8 1 1.4721 -2.1364 -0.0646 9 7 3.3770 -1.2037 0.0836 10 6 4.1178 -2.4604 -0.0513 11 6 5.6116 -2.1958 0.1476 12 7 5.8778 -1.7589 1.5204 13 6 5.5128 -2.5375 2.5582 14 8 5.0389 -3.6353 2.3554 15 6 5.6939 -2.0440 3.9706 16 1 6.5598 -1.3840 4.0209 17 6 5.8979 -3.2374 4.9131 18 6 5.8180 -2.7623 6.3664 19 6 4.3730 -2.3695 6.7002 20 6 3.8723 -1.4447 5.6222 21 7 2.8201 -0.6327 5.6348 22 7 2.7595 -0.0188 4.5017 23 7 3.7309 -0.3930 3.7380 24 1 3.9030 -0.0761 2.8376 25 6 4.4613 -1.2995 4.4096 26 6 6.4359 -3.4636 -0.1872 27 6 7.8315 -2.8840 -0.5270 28 6 7.5237 -1.5792 -1.2901 29 6 6.1121 -1.1416 -0.8612 30 1 -0.4850 0.8400 0.0004 31 1 3.8548 -0.3725 0.2318 32 1 3.9515 -2.8752 -1.0455 33 1 3.7710 -3.1690 0.7008 34 1 6.3167 -0.9091 1.6824 35 1 5.1216 -3.9808 4.7309 36 1 6.8760 -3.6819 4.7296 37 1 6.1381 -3.5661 7.0292 38 1 6.4695 -1.8990 6.5023 39 1 3.7489 -3.2623 6.7373 40 1 4.3440 -1.8609 7.6638 41 1 6.4927 -4.1266 0.6760 42 1 6.0134 -3.9830 -1.0474 43 1 8.3874 -3.5747 -1.1610 44 1 8.3881 -2.6700 0.3854 45 1 7.5479 -1.7605 -2.3647 46 1 8.2495 -0.8105 -1.0250 47 1 5.4515 -1.1106 -1.7276 48 1 6.1524 -0.1608 -0.3873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715099037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:01 Heat of formation + Delta-G solvation = 29.169339 kcal Electronic energy + Delta-G solvation = -31047.581187 eV Core-core repulsion = 27137.829655 eV Total energy + Delta-G solvation = -3909.751532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.58497 -41.58621 -39.31057 -37.52613 -36.39521 -35.10362 -34.42134 -33.46368 -31.57381 -31.18052 -29.93468 -29.68660 -26.47718 -25.64839 -24.33973 -23.96125 -23.63830 -22.35937 -21.10840 -20.71677 -20.48069 -19.75368 -19.36277 -18.17839 -17.29311 -17.14998 -16.68809 -16.56737 -16.16717 -15.92523 -15.41404 -15.33871 -14.96352 -14.84161 -14.79762 -14.61315 -14.41138 -13.99144 -13.83537 -13.75349 -13.16886 -12.92590 -12.69297 -12.55017 -12.42859 -12.36979 -12.27053 -12.25101 -12.07339 -11.99999 -11.93337 -11.88881 -11.71110 -11.62043 -11.36231 -11.27858 -11.11936 -10.72985 -10.06008 -9.94048 -9.34241 -8.09126 -5.43460 0.42537 1.15294 1.31479 1.35142 1.40063 1.53761 1.69147 2.08785 2.38622 3.16573 3.22572 3.34563 3.46891 3.56455 3.65129 3.72856 3.82632 3.95271 3.97376 4.16007 4.29751 4.32995 4.37517 4.46256 4.50510 4.54115 4.63068 4.63850 4.78876 4.81966 4.89676 4.99201 5.00851 5.05421 5.13170 5.13567 5.15097 5.19258 5.28224 5.31901 5.33650 5.48139 5.50673 5.63438 5.69737 5.70839 6.12910 6.50381 7.00866 7.20671 7.33778 7.72226 7.97225 9.13250 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.006690 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.155716 B = 4184.361869 C = 6585.312699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.302 1.302 6 H -0.243 1.243 7 C -0.234 4.234 8 H 0.038 0.962 9 N -0.740 5.740 10 C 0.147 3.853 11 C 0.170 3.830 12 N -0.705 5.705 13 C 0.514 3.486 14 O -0.551 6.551 15 C -0.024 4.024 16 H 0.154 0.846 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.037 4.037 20 C -0.019 4.019 21 N -0.292 5.292 22 N -0.123 5.123 23 N -0.368 5.368 24 H 0.447 0.553 25 C -0.005 4.005 26 C -0.122 4.122 27 C -0.110 4.110 28 C -0.115 4.115 29 C -0.126 4.126 30 H 0.257 0.743 31 H 0.365 0.635 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.412 0.588 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.952 -3.514 7.963 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.250 4.250 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.168 1.168 7 C -0.365 4.365 8 H 0.056 0.944 9 N -0.387 5.387 10 C 0.020 3.980 11 C 0.084 3.916 12 N -0.358 5.358 13 C 0.299 3.701 14 O -0.428 6.428 15 C -0.048 4.048 16 H 0.171 0.829 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.076 4.076 20 C -0.160 4.160 21 N -0.157 5.157 22 N -0.101 5.101 23 N -0.087 5.087 24 H 0.293 0.707 25 C -0.142 4.142 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.152 4.152 29 C -0.164 4.164 30 H 0.066 0.934 31 H 0.199 0.801 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 25.070 -3.489 8.013 26.549 hybrid contribution -0.171 1.002 -1.140 1.528 sum 24.899 -2.487 6.873 25.949 Atomic orbital electron populations 1.69896 1.07498 1.26671 1.59099 1.25538 0.96019 1.01205 1.02234 0.85497 0.78523 0.79440 0.78590 1.19680 1.22943 1.16778 1.18847 0.83104 0.92764 1.41801 0.94377 1.42388 1.02178 1.05290 1.88814 1.21115 0.90869 0.88128 0.97859 1.21313 0.92379 0.96481 0.81442 1.45994 1.61236 1.23482 1.05051 1.20722 0.77141 0.84987 0.87206 1.90693 1.43874 1.22289 1.85973 1.20236 0.93590 0.99032 0.91896 0.82869 1.21579 1.04335 0.94267 0.93628 1.21650 0.94086 1.03442 0.95117 1.20248 0.97489 0.95615 0.94231 1.22493 0.94133 1.01742 0.97649 1.74782 1.18844 1.09245 1.12784 1.78652 1.09828 1.23060 0.98545 1.44824 1.18654 1.28829 1.16362 0.70680 1.21905 1.00254 0.97819 0.94258 1.22747 0.96073 0.95842 1.01438 1.22301 0.95208 0.96608 1.00638 1.22123 0.94680 0.97801 1.00629 1.22449 0.98111 0.97723 0.98129 0.93409 0.80075 0.95890 0.96134 0.75144 0.92395 0.87380 0.87250 0.89353 0.90007 0.88235 0.91405 0.91355 0.90408 0.90513 0.91194 0.89650 0.91347 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.15 13.97 21.65 0.30 -64.85 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.95 44.67 27.82 68.60 1.91 46.58 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.24 -9.31 6.42 99.48 0.64 -8.67 16 7 C -0.23 -13.64 10.47 84.03 0.88 -12.77 16 8 H 0.04 2.56 8.06 -2.90 -0.02 2.54 16 9 N -0.74 -33.18 5.10 -343.43 -1.75 -34.93 16 10 C 0.15 5.77 4.96 86.38 0.43 6.20 16 11 C 0.17 4.45 0.42 4.68 0.00 4.45 16 12 N -0.70 -15.44 5.06 -418.08 -2.12 -17.56 16 13 C 0.51 13.23 6.22 87.66 0.55 13.78 16 14 O -0.55 -19.13 12.60 -3.03 -0.04 -19.17 16 15 C -0.02 -0.47 2.90 -12.19 -0.04 -0.50 16 16 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 17 C -0.10 -1.59 4.99 30.77 0.15 -1.43 16 18 C -0.11 -1.22 5.90 30.77 0.18 -1.04 16 19 C -0.04 -0.71 6.30 29.96 0.19 -0.52 16 20 C -0.02 -0.56 7.11 41.75 0.30 -0.26 16 21 N -0.29 -11.32 12.40 -48.99 -0.61 -11.93 16 22 N -0.12 -5.15 13.40 37.02 0.50 -4.65 16 23 N -0.37 -12.91 6.92 -48.27 -0.33 -13.24 16 24 H 0.45 15.25 8.96 -219.68 -1.97 13.28 16 25 C -0.01 -0.15 6.43 41.50 0.27 0.12 16 26 C -0.12 -2.80 5.72 31.89 0.18 -2.62 16 27 C -0.11 -1.66 6.79 31.67 0.22 -1.45 16 28 C -0.11 -1.70 6.80 31.32 0.21 -1.49 16 29 C -0.13 -2.71 5.17 31.32 0.16 -2.55 16 30 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 31 H 0.37 14.70 4.99 -92.70 -0.46 14.24 16 32 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 33 H 0.02 0.96 6.08 -2.39 -0.01 0.94 16 34 H 0.41 6.11 8.29 -92.71 -0.77 5.34 16 35 H 0.06 1.31 7.46 -2.38 -0.02 1.30 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.74 8.12 -2.38 -0.02 0.72 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.76 6.50 -2.39 -0.02 1.74 16 42 H 0.07 1.67 8.00 -2.38 -0.02 1.65 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 1.78 7.84 -2.39 -0.02 1.77 16 48 H 0.08 1.49 7.77 -2.38 -0.02 1.47 16 Total: -1.00 -85.11 375.29 -0.25 -85.36 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -2.26 Total: 37.47 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 4.15 Total: -3.08 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -4.01 Total: -147.16 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.04 Total: -19.17 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.91 Total: 46.58 kcal Total: -85.11 -0.25 -85.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715099037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.533 kcal (2) G-P(sol) polarization free energy of solvation -85.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds