Wall clock time and date at job start Tue Mar 31 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99549 * 2 1 4 4 H 1.48498 * 109.47504 * 270.00378 * 3 2 1 5 5 H 1.48507 * 109.47054 * 30.00842 * 3 2 1 6 6 H 1.48502 * 109.46835 * 150.00233 * 3 2 1 7 7 C 1.38809 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99641 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99602 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46941 * 174.97696 * 10 9 7 12 12 N 1.46500 * 110.43139 * 307.06357 * 11 10 9 13 13 C 1.34778 * 119.99793 * 302.28838 * 12 11 10 14 14 O 1.21279 * 120.00353 * 354.86381 * 13 12 11 15 15 C 1.50703 * 119.99803 * 174.86585 * 13 12 11 16 16 H 1.09001 * 109.68907 * 59.46033 * 15 13 12 17 17 C 1.53437 * 109.69305 * 180.02562 * 15 13 12 18 18 C 1.53105 * 109.55253 * 169.42449 * 17 15 13 19 19 C 1.53417 * 109.57718 * 289.92698 * 18 17 15 20 20 C 1.50599 * 108.33541 * 49.80304 * 19 18 17 21 21 N 1.32913 * 129.15947 * 163.45931 * 20 19 18 22 22 N 1.29026 * 108.63272 * 180.18328 * 21 20 19 23 23 N 1.29110 * 110.25663 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.00362 * 179.90570 * 23 22 21 25 25 C 1.34388 * 107.98772 * 0.16884 * 23 22 21 26 26 C 1.54889 * 110.60349 * 69.67721 * 11 10 9 27 27 C 1.54889 * 102.75104 * 156.67932 * 26 11 10 28 28 C 1.54272 * 104.19296 * 322.05997 * 27 26 11 29 29 C 1.53872 * 106.60060 * 23.61099 * 28 27 26 30 30 H 0.96991 * 120.00387 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00194 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47551 * 54.97417 * 10 9 7 33 33 H 1.09001 * 109.46878 * 294.97078 * 10 9 7 34 34 H 0.97003 * 120.00512 * 122.29428 * 12 11 10 35 35 H 1.09000 * 109.45849 * 49.39921 * 17 15 13 36 36 H 1.09004 * 109.46166 * 289.45046 * 17 15 13 37 37 H 1.09002 * 109.45981 * 169.89605 * 18 17 15 38 38 H 1.08998 * 109.45441 * 49.95690 * 18 17 15 39 39 H 1.09000 * 109.69564 * 290.09860 * 19 18 17 40 40 H 1.09000 * 109.72718 * 169.53200 * 19 18 17 41 41 H 1.08997 * 110.75857 * 274.99875 * 26 11 10 42 42 H 1.09006 * 110.75234 * 38.36199 * 26 11 10 43 43 H 1.08999 * 110.48472 * 203.38440 * 27 26 11 44 44 H 1.08998 * 110.48541 * 80.73723 * 27 26 11 45 45 H 1.09001 * 110.02739 * 264.32514 * 28 27 26 46 46 H 1.09000 * 110.03146 * 142.89636 * 28 27 26 47 47 H 1.09002 * 110.02902 * 240.71796 * 29 28 27 48 48 H 1.08995 * 110.03678 * 119.28169 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0467 -1.4000 5 1 1.4475 2.6527 0.7003 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0690 -4.8169 0.1258 12 7 0.1933 -4.6186 1.2834 13 6 0.7247 -4.4775 2.5139 14 8 1.9194 -4.6073 2.6771 15 6 -0.1658 -4.1583 3.6871 16 1 -0.9122 -4.9438 3.8060 17 6 0.6793 -4.0501 4.9633 18 6 -0.1741 -3.4720 6.0954 19 6 -0.4684 -1.9930 5.8135 20 6 -0.9830 -1.8727 4.4033 21 7 -1.6320 -0.8645 3.8298 22 7 -1.8893 -1.1828 2.6062 23 7 -1.4352 -2.3631 2.3463 24 1 -1.5044 -2.8264 1.4969 25 6 -0.8549 -2.8392 3.4610 26 6 0.2313 -4.9622 -1.1689 27 6 -0.2200 -6.4431 -1.1196 28 6 1.0024 -7.1923 -0.5500 29 6 1.8219 -6.1584 0.2418 30 1 -0.4850 0.8399 0.0004 31 1 0.3558 -2.3881 -0.0005 32 1 2.7508 -3.6764 0.8410 33 1 2.6157 -3.7543 -0.9322 34 1 -0.7689 -4.5889 1.1644 35 1 1.5313 -3.3954 4.7801 36 1 1.0368 -5.0400 5.2471 37 1 0.3650 -3.5615 7.0385 38 1 -1.1124 -4.0229 6.1603 39 1 0.4459 -1.4094 5.9218 40 1 -1.2217 -1.6282 6.5117 41 1 -0.6304 -4.2950 -1.1485 42 1 0.8456 -4.7747 -2.0496 43 1 -0.4558 -6.8036 -2.1209 44 1 -1.0796 -6.5582 -0.4594 45 1 1.6023 -7.6006 -1.3634 46 1 0.6740 -7.9942 0.1112 47 1 2.8195 -6.0649 -0.1872 48 1 1.8912 -6.4583 1.2874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715099038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:05 Heat of formation + Delta-G solvation = 57.324215 kcal Electronic energy + Delta-G solvation = -31387.616567 eV Core-core repulsion = 27479.085921 eV Total energy + Delta-G solvation = -3908.530645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.99267 -40.27850 -38.08016 -36.35800 -34.37970 -33.79417 -32.87055 -31.12140 -30.22621 -29.74663 -28.74679 -28.12786 -24.74247 -24.35784 -22.77074 -22.42418 -22.23464 -21.00521 -20.36902 -19.31346 -19.22038 -17.94409 -17.10500 -16.88149 -16.00899 -15.84217 -15.19201 -14.98862 -14.66945 -14.31274 -14.23761 -13.82534 -13.72749 -13.46810 -13.40040 -13.13832 -12.93263 -12.64522 -12.19485 -12.06357 -11.54806 -11.44083 -11.24154 -11.18919 -11.11247 -11.02504 -10.95547 -10.91375 -10.80182 -10.72357 -10.52416 -10.41742 -10.30796 -10.02531 -9.88982 -9.67488 -9.48649 -8.79313 -8.75351 -8.41939 -6.84863 -5.70179 -2.97119 1.99569 2.80951 3.05807 3.17777 3.28827 3.48119 3.54615 3.56649 4.47985 4.53050 4.57265 4.67155 4.70748 4.79885 4.85851 4.91006 5.04273 5.24602 5.31207 5.41170 5.45154 5.50617 5.57069 5.61715 5.65150 5.66647 5.80057 5.82236 5.83488 5.92253 5.93977 5.99799 6.08292 6.13718 6.20049 6.22850 6.26043 6.32429 6.38163 6.44940 6.50652 6.58741 6.80973 6.99315 7.28384 7.63270 7.78307 8.41192 8.47426 9.01147 9.59610 10.12094 10.48337 11.51565 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.007830 B = 0.007229 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.157937 B = 3872.134202 C = 6193.745731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.900 3.100 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.723 5.723 10 C 0.145 3.855 11 C 0.168 3.832 12 N -0.715 5.715 13 C 0.528 3.472 14 O -0.515 6.515 15 C -0.027 4.027 16 H 0.107 0.893 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.033 4.033 20 C -0.010 4.010 21 N -0.273 5.273 22 N -0.035 5.035 23 N -0.355 5.355 24 H 0.440 0.560 25 C -0.025 4.025 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.123 4.123 30 H 0.256 0.744 31 H 0.375 0.625 32 H 0.044 0.956 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 -16.403 6.498 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.732 3.268 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.083 0.917 9 N -0.367 5.367 10 C 0.017 3.983 11 C 0.083 3.917 12 N -0.367 5.367 13 C 0.313 3.687 14 O -0.389 6.389 15 C -0.051 4.051 16 H 0.125 0.875 17 C -0.134 4.134 18 C -0.154 4.154 19 C -0.072 4.072 20 C -0.150 4.150 21 N -0.139 5.139 22 N -0.014 5.014 23 N -0.074 5.074 24 H 0.286 0.714 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.163 4.163 28 C -0.160 4.160 29 C -0.162 4.162 30 H 0.066 0.934 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.787 -15.016 6.157 16.665 hybrid contribution 0.264 -0.056 -0.555 0.617 sum -3.522 -15.072 5.602 16.460 Atomic orbital electron populations 1.69533 1.04509 1.25756 1.56809 1.24630 0.95576 0.97181 1.02809 0.86300 0.78732 0.84533 0.77228 1.21971 1.21781 1.21121 1.19085 0.90850 0.84031 1.43576 0.91688 1.42065 1.05080 0.99719 1.89795 1.21055 0.93437 0.84946 0.98851 1.21451 0.90753 0.95381 0.84160 1.45980 1.09094 1.74702 1.06938 1.20163 0.88923 0.76175 0.83478 1.90676 1.15086 1.48729 1.84406 1.19937 0.96901 0.92468 0.95799 0.87524 1.21434 0.98077 1.02779 0.91128 1.21637 1.00202 0.95139 0.98411 1.19937 1.01070 0.96917 0.89322 1.21507 1.04143 0.91164 0.98227 1.74843 1.15321 1.23610 1.00103 1.78692 1.17658 0.95409 1.09685 1.44584 1.37737 1.13167 1.11955 0.71405 1.21159 1.06647 0.99620 0.88672 1.22751 1.00032 0.95811 0.97203 1.22409 0.97698 0.95521 1.00681 1.22136 0.96680 0.97924 0.99259 1.22435 0.98984 0.93512 1.01252 0.93418 0.79166 0.93804 0.96109 0.78187 0.89821 0.90350 0.90480 0.91540 0.89995 0.90065 0.90946 0.89518 0.91638 0.92024 0.91970 0.92304 0.90936 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 13.06 55.49 0.72 -25.88 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 23.41 29.55 -169.99 -5.02 18.38 16 4 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.31 5.30 -59.91 -0.32 -17.63 16 10 C 0.15 2.94 4.75 -4.04 -0.02 2.92 16 11 C 0.17 2.51 0.39 -130.16 -0.05 2.46 16 12 N -0.72 -9.89 3.99 -46.07 -0.18 -10.08 16 13 C 0.53 8.14 6.38 -10.98 -0.07 8.07 16 14 O -0.51 -9.58 12.77 5.56 0.07 -9.51 16 15 C -0.03 -0.35 2.89 -92.77 -0.27 -0.62 16 16 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.10 -1.15 4.67 -26.45 -0.12 -1.27 16 18 C -0.12 -1.15 5.89 -26.46 -0.16 -1.31 16 19 C -0.03 -0.43 6.30 -27.72 -0.17 -0.60 16 20 C -0.01 -0.18 7.11 -83.12 -0.59 -0.77 16 21 N -0.27 -5.65 12.40 33.16 0.41 -5.24 16 22 N -0.03 -0.74 13.40 60.35 0.81 0.07 16 23 N -0.36 -6.25 6.78 33.39 0.23 -6.02 16 24 H 0.44 6.98 7.03 -190.07 -1.34 5.65 16 25 C -0.03 -0.41 6.41 -82.50 -0.53 -0.94 16 26 C -0.12 -1.56 5.63 -24.74 -0.14 -1.70 16 27 C -0.13 -1.27 6.79 -25.07 -0.17 -1.44 16 28 C -0.12 -1.27 6.80 -25.61 -0.17 -1.45 16 29 C -0.12 -1.63 5.68 -25.61 -0.15 -1.77 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 8.94 7.27 -40.82 -0.30 8.64 16 32 H 0.04 1.01 6.49 -51.93 -0.34 0.67 16 33 H 0.02 0.43 8.04 -51.93 -0.42 0.02 16 34 H 0.38 4.42 6.98 -40.82 -0.29 4.14 16 35 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 42 H 0.09 1.20 7.98 -51.93 -0.41 0.78 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 48 H 0.07 1.07 6.57 -51.93 -0.34 0.73 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -34.12 375.33 -8.91 -43.04 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -8.43 Total: 12.88 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.86 Total: -5.67 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 1.67 Total: -64.78 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.12 -8.91 -43.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715099038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.363 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds