Wall clock time and date at job start Tue Mar 31 2020 18:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99549 * 2 1 4 4 H 1.48498 * 109.47504 * 270.00378 * 3 2 1 5 5 H 1.48507 * 109.47054 * 30.00842 * 3 2 1 6 6 H 1.48502 * 109.46835 * 150.00233 * 3 2 1 7 7 C 1.38809 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99641 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99602 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46941 * 174.97696 * 10 9 7 12 12 N 1.46500 * 110.43139 * 307.06357 * 11 10 9 13 13 C 1.34778 * 119.99793 * 302.28838 * 12 11 10 14 14 O 1.21279 * 120.00353 * 354.86381 * 13 12 11 15 15 C 1.50703 * 119.99803 * 174.86585 * 13 12 11 16 16 H 1.09001 * 109.68907 * 59.46033 * 15 13 12 17 17 C 1.53437 * 109.69305 * 180.02562 * 15 13 12 18 18 C 1.53105 * 109.55253 * 169.42449 * 17 15 13 19 19 C 1.53417 * 109.57718 * 289.92698 * 18 17 15 20 20 C 1.50599 * 108.33541 * 49.80304 * 19 18 17 21 21 N 1.32913 * 129.15947 * 163.45931 * 20 19 18 22 22 N 1.29026 * 108.63272 * 180.18328 * 21 20 19 23 23 N 1.29110 * 110.25663 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.00362 * 179.90570 * 23 22 21 25 25 C 1.34388 * 107.98772 * 0.16884 * 23 22 21 26 26 C 1.54889 * 110.60349 * 69.67721 * 11 10 9 27 27 C 1.54889 * 102.75104 * 156.67932 * 26 11 10 28 28 C 1.54272 * 104.19296 * 322.05997 * 27 26 11 29 29 C 1.53872 * 106.60060 * 23.61099 * 28 27 26 30 30 H 0.96991 * 120.00387 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00194 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47551 * 54.97417 * 10 9 7 33 33 H 1.09001 * 109.46878 * 294.97078 * 10 9 7 34 34 H 0.97003 * 120.00512 * 122.29428 * 12 11 10 35 35 H 1.09000 * 109.45849 * 49.39921 * 17 15 13 36 36 H 1.09004 * 109.46166 * 289.45046 * 17 15 13 37 37 H 1.09002 * 109.45981 * 169.89605 * 18 17 15 38 38 H 1.08998 * 109.45441 * 49.95690 * 18 17 15 39 39 H 1.09000 * 109.69564 * 290.09860 * 19 18 17 40 40 H 1.09000 * 109.72718 * 169.53200 * 19 18 17 41 41 H 1.08997 * 110.75857 * 274.99875 * 26 11 10 42 42 H 1.09006 * 110.75234 * 38.36199 * 26 11 10 43 43 H 1.08999 * 110.48472 * 203.38440 * 27 26 11 44 44 H 1.08998 * 110.48541 * 80.73723 * 27 26 11 45 45 H 1.09001 * 110.02739 * 264.32514 * 28 27 26 46 46 H 1.09000 * 110.03146 * 142.89636 * 28 27 26 47 47 H 1.09002 * 110.02902 * 240.71796 * 29 28 27 48 48 H 1.08995 * 110.03678 * 119.28169 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0467 -1.4000 5 1 1.4475 2.6527 0.7003 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0690 -4.8169 0.1258 12 7 0.1933 -4.6186 1.2834 13 6 0.7247 -4.4775 2.5139 14 8 1.9194 -4.6073 2.6771 15 6 -0.1658 -4.1583 3.6871 16 1 -0.9122 -4.9438 3.8060 17 6 0.6793 -4.0501 4.9633 18 6 -0.1741 -3.4720 6.0954 19 6 -0.4684 -1.9930 5.8135 20 6 -0.9830 -1.8727 4.4033 21 7 -1.6320 -0.8645 3.8298 22 7 -1.8893 -1.1828 2.6062 23 7 -1.4352 -2.3631 2.3463 24 1 -1.5044 -2.8264 1.4969 25 6 -0.8549 -2.8392 3.4610 26 6 0.2313 -4.9622 -1.1689 27 6 -0.2200 -6.4431 -1.1196 28 6 1.0024 -7.1923 -0.5500 29 6 1.8219 -6.1584 0.2418 30 1 -0.4850 0.8399 0.0004 31 1 0.3558 -2.3881 -0.0005 32 1 2.7508 -3.6764 0.8410 33 1 2.6157 -3.7543 -0.9322 34 1 -0.7689 -4.5889 1.1644 35 1 1.5313 -3.3954 4.7801 36 1 1.0368 -5.0400 5.2471 37 1 0.3650 -3.5615 7.0385 38 1 -1.1124 -4.0229 6.1603 39 1 0.4459 -1.4094 5.9218 40 1 -1.2217 -1.6282 6.5117 41 1 -0.6304 -4.2950 -1.1485 42 1 0.8456 -4.7747 -2.0496 43 1 -0.4558 -6.8036 -2.1209 44 1 -1.0796 -6.5582 -0.4594 45 1 1.6023 -7.6006 -1.3634 46 1 0.6740 -7.9942 0.1112 47 1 2.8195 -6.0649 -0.1872 48 1 1.8912 -6.4583 1.2874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715099038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:04 Heat of formation + Delta-G solvation = 32.912835 kcal Electronic energy + Delta-G solvation = -31388.675124 eV Core-core repulsion = 27479.085921 eV Total energy + Delta-G solvation = -3909.589202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.35969 -41.50720 -39.22830 -37.44778 -36.19923 -35.14361 -34.18450 -32.99952 -31.42843 -30.97690 -29.80534 -29.52346 -26.38172 -25.62461 -24.14958 -24.02293 -23.51698 -22.20989 -21.34051 -20.52088 -20.41252 -19.29230 -19.05220 -18.06808 -17.29917 -17.14514 -16.55230 -16.39540 -16.05862 -15.75797 -15.33067 -15.11963 -15.09509 -14.73982 -14.68102 -14.51826 -14.33207 -13.95662 -13.74897 -13.21807 -13.09520 -12.89014 -12.62113 -12.47247 -12.36922 -12.25172 -12.23114 -12.18355 -12.06542 -11.93959 -11.88472 -11.79092 -11.70413 -11.51296 -11.27776 -11.21610 -11.02035 -10.65728 -10.02251 -9.73865 -8.92518 -7.93205 -5.17412 0.66210 1.36635 1.39550 1.45644 1.51171 1.70118 1.90758 2.12581 2.51337 3.33630 3.38970 3.44604 3.49435 3.68760 3.69927 3.83712 3.91850 4.04264 4.16368 4.24680 4.36581 4.39764 4.42216 4.52962 4.55833 4.60728 4.66886 4.73704 4.81028 4.85282 4.90401 5.01454 5.05528 5.06914 5.13687 5.14408 5.19410 5.22715 5.29428 5.33085 5.40418 5.46892 5.48842 5.51353 5.67033 5.95895 6.25895 6.48394 7.22563 7.36557 7.58834 8.07954 8.38102 9.25157 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.007830 B = 0.007229 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.157937 B = 3872.134202 C = 6193.745731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.050 4.050 3 Si 0.949 3.051 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.285 1.285 7 C -0.252 4.252 8 H 0.053 0.947 9 N -0.722 5.722 10 C 0.146 3.854 11 C 0.172 3.828 12 N -0.706 5.706 13 C 0.521 3.479 14 O -0.550 6.550 15 C -0.022 4.022 16 H 0.155 0.845 17 C -0.095 4.095 18 C -0.103 4.103 19 C -0.037 4.037 20 C -0.026 4.026 21 N -0.307 5.307 22 N -0.083 5.083 23 N -0.350 5.350 24 H 0.444 0.556 25 C -0.016 4.016 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.114 4.114 29 C -0.118 4.118 30 H 0.247 0.753 31 H 0.376 0.624 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.399 0.601 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -19.216 7.257 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.246 4.246 3 Si 0.781 3.219 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.211 1.211 7 C -0.385 4.385 8 H 0.071 0.929 9 N -0.365 5.365 10 C 0.019 3.981 11 C 0.086 3.914 12 N -0.359 5.359 13 C 0.307 3.693 14 O -0.427 6.427 15 C -0.045 4.045 16 H 0.173 0.827 17 C -0.133 4.133 18 C -0.141 4.141 19 C -0.076 4.076 20 C -0.166 4.166 21 N -0.172 5.172 22 N -0.062 5.062 23 N -0.070 5.070 24 H 0.291 0.709 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.151 4.151 28 C -0.152 4.152 29 C -0.157 4.157 30 H 0.056 0.944 31 H 0.209 0.791 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.234 0.766 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.666 -17.842 6.888 19.686 hybrid contribution 0.645 0.810 -0.794 1.305 sum -4.021 -17.032 6.094 18.530 Atomic orbital electron populations 1.69647 1.04937 1.25341 1.57512 1.25177 0.96422 0.99369 1.03629 0.85519 0.77567 0.81603 0.77247 1.21170 1.22792 1.21093 1.19249 0.90619 0.85710 1.42877 0.92869 1.42057 1.05112 0.99972 1.89403 1.21099 0.94315 0.85574 0.97156 1.21321 0.90481 0.93944 0.85694 1.45900 1.09747 1.73925 1.06303 1.20666 0.88796 0.75480 0.84341 1.90670 1.16717 1.50325 1.85002 1.20186 0.97364 0.91945 0.95036 0.82726 1.21470 0.97033 1.03436 0.91361 1.21632 1.01247 0.92662 0.98558 1.20169 1.00802 0.99371 0.87224 1.22294 1.03597 0.90435 1.00315 1.74772 1.16682 1.25275 1.00450 1.78627 1.20063 0.97130 1.10352 1.44578 1.37346 1.12531 1.12541 0.70908 1.21686 1.05261 1.00564 0.87698 1.22727 0.99255 0.98353 0.95397 1.22376 0.97971 0.92596 1.02196 1.22101 0.96365 0.97280 0.99430 1.22367 0.98854 0.93210 1.01247 0.94417 0.79097 0.96759 0.96578 0.76579 0.93535 0.87956 0.87699 0.89142 0.91049 0.88442 0.91425 0.90584 0.89895 0.90305 0.90944 0.90562 0.92021 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.06 21.65 0.28 -54.37 16 2 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 3 Si 0.95 49.05 29.55 68.60 2.03 51.08 16 4 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 5 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 6 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 8 H 0.05 3.13 7.83 -2.91 -0.02 3.10 16 9 N -0.72 -35.34 5.30 -343.46 -1.82 -37.17 16 10 C 0.15 6.05 4.75 86.38 0.41 6.46 16 11 C 0.17 5.01 0.39 4.68 0.00 5.01 16 12 N -0.71 -18.66 3.99 -418.07 -1.67 -20.33 16 13 C 0.52 15.50 6.38 87.66 0.56 16.06 16 14 O -0.55 -20.48 12.77 -3.03 -0.04 -20.52 16 15 C -0.02 -0.52 2.89 -12.19 -0.04 -0.55 16 16 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.09 -2.05 4.67 30.78 0.14 -1.91 16 18 C -0.10 -1.70 5.89 30.77 0.18 -1.52 16 19 C -0.04 -0.89 6.30 29.96 0.19 -0.70 16 20 C -0.03 -0.87 7.11 41.75 0.30 -0.58 16 21 N -0.31 -12.98 12.40 -48.99 -0.61 -13.58 16 22 N -0.08 -3.59 13.40 37.02 0.50 -3.09 16 23 N -0.35 -12.34 6.78 -48.27 -0.33 -12.67 16 24 H 0.44 14.06 7.03 -219.67 -1.54 12.51 16 25 C -0.02 -0.49 6.41 41.50 0.27 -0.22 16 26 C -0.12 -2.93 5.63 31.89 0.18 -2.75 16 27 C -0.11 -1.90 6.79 31.67 0.22 -1.69 16 28 C -0.11 -2.01 6.80 31.32 0.21 -1.79 16 29 C -0.12 -2.96 5.68 31.32 0.18 -2.79 16 30 H 0.25 14.81 8.31 -92.72 -0.77 14.04 16 31 H 0.38 18.18 7.27 -92.71 -0.67 17.51 16 32 H 0.01 0.69 6.49 -2.39 -0.02 0.67 16 33 H 0.02 0.69 8.04 -2.39 -0.02 0.67 16 34 H 0.40 8.38 6.98 -92.71 -0.65 7.73 16 35 H 0.05 1.37 7.73 -2.39 -0.02 1.35 16 36 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 42 H 0.08 2.03 7.98 -2.38 -0.02 2.02 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16 48 H 0.07 1.79 6.57 -2.39 -0.02 1.77 16 Total: -1.00 -77.66 375.33 0.59 -77.07 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -1.86 Total: 36.67 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 4.10 Total: -3.09 kcal Atomic # 7 Polarization: -137.56 SS G_CDS: -3.64 Total: -141.21 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.04 Total: -20.52 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -77.66 0.59 -77.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715099038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.981 kcal (2) G-P(sol) polarization free energy of solvation -77.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds