Wall clock time and date at job start Tue Mar 31 2020 18:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00372 * 2 1 4 4 H 1.48502 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46974 * 300.00681 * 3 2 1 6 6 H 1.48504 * 109.46890 * 60.00420 * 3 2 1 7 7 C 1.38813 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00675 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00153 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47344 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47468 * 295.00652 * 11 10 9 13 13 N 1.46504 * 109.47110 * 54.99924 * 11 10 9 14 14 C 1.34771 * 120.00115 * 205.00213 * 13 11 10 15 15 O 1.21563 * 120.00134 * 359.97438 * 14 13 11 16 16 C 1.47731 * 119.99851 * 180.02562 * 14 13 11 17 17 N 1.33017 * 120.16366 * 354.67484 * 16 14 13 18 18 C 1.31723 * 120.01126 * 180.02562 * 17 16 14 19 19 C 1.38800 * 120.34333 * 0.02562 * 18 17 16 20 20 N 1.32028 * 120.32811 * 0.02562 * 19 18 17 21 21 C 1.32842 * 119.98079 * 359.66399 * 20 19 18 22 22 N 1.38265 * 120.16675 * 180.30073 * 21 20 19 23 23 C 1.52996 * 109.47464 * 175.00422 * 11 10 9 24 24 C 1.53000 * 109.46672 * 300.00069 * 23 11 10 25 25 C 1.53004 * 109.46971 * 180.02562 * 24 23 11 26 26 C 1.52995 * 109.47585 * 59.99674 * 25 24 23 27 27 C 1.53000 * 109.47239 * 300.00563 * 26 25 24 28 28 C 1.52999 * 109.47348 * 59.99598 * 27 26 25 29 29 H 0.97001 * 119.99774 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99734 * 359.97438 * 9 7 2 31 31 H 1.09008 * 109.47000 * 59.99893 * 10 9 7 32 32 H 1.08997 * 109.47635 * 300.00182 * 10 9 7 33 33 H 0.96997 * 119.99473 * 25.00578 * 13 11 10 34 34 H 1.08003 * 119.82773 * 179.97438 * 18 17 16 35 35 H 1.08005 * 119.84009 * 180.02562 * 19 18 17 36 36 H 0.97003 * 119.99550 * 185.69499 * 22 21 20 37 37 H 0.97001 * 120.00249 * 5.68979 * 22 21 20 38 38 H 1.08999 * 109.47215 * 59.99759 * 23 11 10 39 39 H 1.09002 * 109.47546 * 299.99804 * 24 23 11 40 40 H 1.08998 * 109.47547 * 60.00046 * 24 23 11 41 41 H 1.09007 * 109.47092 * 299.99612 * 25 24 23 42 42 H 1.09005 * 109.47264 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.47209 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47101 * 60.00130 * 26 25 24 45 45 H 1.09007 * 109.46569 * 299.99530 * 27 26 25 46 46 H 1.08994 * 109.47068 * 180.02562 * 27 26 25 47 47 H 1.08996 * 109.47145 * 180.02562 * 28 27 26 48 48 H 1.09002 * 109.46806 * 59.99938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.4984 -4.8138 0.9312 13 7 0.1428 -4.6758 -1.1311 14 6 -1.0815 -5.2366 -1.0785 15 8 -1.4217 -5.8622 -0.0933 16 6 -2.0098 -5.0919 -2.2186 17 7 -1.6831 -4.3221 -3.2530 18 6 -2.5133 -4.1948 -4.2677 19 6 -3.7313 -4.8604 -4.2649 20 7 -4.0697 -5.6271 -3.2447 21 6 -3.2397 -5.7696 -2.2174 22 7 -3.5875 -6.5765 -1.1498 23 6 1.8243 -6.1411 -0.1276 24 6 2.6176 -6.1494 -1.4358 25 6 3.3777 -7.4711 -1.5630 26 6 2.3831 -8.6337 -1.5623 27 6 1.5897 -8.6254 -0.2541 28 6 0.8295 -7.3037 -0.1270 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6853 -3.7150 0.8879 32 1 2.6839 -3.7143 -0.8921 33 1 0.4145 -4.1769 -1.9174 34 1 -2.2452 -3.5687 -5.1059 35 1 -4.4057 -4.7506 -5.1013 36 1 -3.0186 -6.6144 -0.3650 37 1 -4.4003 -7.1046 -1.1856 38 1 2.5093 -6.2482 0.7134 39 1 1.9325 -6.0423 -2.2769 40 1 3.3259 -5.3209 -1.4365 41 1 4.0628 -7.5786 -0.7220 42 1 3.9433 -7.4768 -2.4948 43 1 2.9246 -9.5752 -1.6534 44 1 1.6981 -8.5262 -2.4033 45 1 2.2748 -8.7329 0.5869 46 1 0.8815 -9.4539 -0.2535 47 1 0.2647 -7.2977 0.8052 48 1 0.1445 -7.1963 -0.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715397117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:40 Heat of formation + Delta-G solvation = 12.734633 kcal Electronic energy + Delta-G solvation = -30073.165741 eV Core-core repulsion = 26162.701547 eV Total energy + Delta-G solvation = -3910.464195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23423 -39.87636 -38.01088 -35.95646 -35.25646 -33.64949 -33.53156 -31.51015 -30.69830 -30.46346 -29.60243 -27.12702 -25.43462 -23.93408 -23.49020 -22.74484 -21.71126 -21.35415 -20.15099 -19.27114 -18.40771 -17.71641 -17.54561 -16.98375 -16.10699 -15.72642 -15.38428 -15.08269 -14.89118 -14.58000 -14.40827 -14.15577 -14.03282 -13.81286 -13.39014 -13.32927 -13.13124 -13.11375 -12.39208 -12.21729 -11.90511 -11.78227 -11.65276 -11.56434 -11.05629 -10.98483 -10.95023 -10.81577 -10.76487 -10.57199 -10.38519 -10.19544 -10.09638 -9.92762 -9.74763 -9.65856 -9.09061 -8.87786 -8.66080 -8.02581 -6.92408 -5.75180 -3.04852 0.59589 1.32131 2.92102 3.21279 3.43728 3.49213 3.51600 3.57658 3.93863 4.24418 4.33225 4.56958 4.64904 4.78098 4.82960 4.86427 5.11526 5.21828 5.27745 5.30515 5.33746 5.45345 5.52056 5.58065 5.62883 5.65620 5.75324 5.83728 5.94450 6.00160 6.09774 6.15544 6.19292 6.23330 6.31094 6.34128 6.44207 6.48187 6.53268 6.63320 6.71389 6.87360 7.03512 7.22417 7.56216 7.70684 7.82439 8.05613 8.42026 8.47700 9.54141 10.10406 10.45339 11.47056 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008045 B = 0.004809 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.393218 B = 5821.594492 C = 8279.563972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.143 3.857 11 C 0.140 3.860 12 H 0.089 0.911 13 N -0.678 5.678 14 C 0.589 3.411 15 O -0.552 6.552 16 C -0.044 4.044 17 N -0.363 5.363 18 C -0.025 4.025 19 C 0.131 3.869 20 N -0.515 5.515 21 C 0.409 3.591 22 N -0.817 5.817 23 C -0.093 4.093 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.105 4.105 29 H 0.254 0.746 30 H 0.386 0.614 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.415 0.585 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.428 0.572 37 H 0.398 0.602 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -17.607 -7.157 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.015 3.985 11 C 0.035 3.965 12 H 0.107 0.893 13 N -0.327 5.327 14 C 0.375 3.625 15 O -0.432 6.432 16 C -0.193 4.193 17 N -0.079 5.079 18 C -0.190 4.190 19 C -0.033 4.033 20 N -0.239 5.239 21 C 0.165 3.835 22 N -0.370 5.370 23 C -0.113 4.113 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.142 4.142 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.252 0.748 34 H 0.188 0.812 35 H 0.189 0.811 36 H 0.275 0.725 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.463 -17.929 -6.291 19.160 hybrid contribution -0.032 1.167 -0.284 1.202 sum -2.496 -16.762 -6.575 18.177 Atomic orbital electron populations 1.69685 1.05101 1.25469 1.57497 1.24738 0.95462 0.97654 1.02897 0.86140 0.78781 0.84234 0.77144 1.20563 1.21898 1.21945 1.19239 0.90999 0.84053 1.42901 0.91120 1.42347 1.05981 0.99703 1.89474 1.21034 0.93170 0.85267 0.99054 1.21413 0.90682 0.94616 0.89771 0.89258 1.45687 1.13415 1.52562 1.20987 1.17365 0.81579 0.78773 0.84797 1.90364 1.75754 1.44054 1.33006 1.21332 0.95661 1.04428 0.97927 1.68130 1.31956 1.09245 0.98603 1.23395 0.93061 1.03755 0.98786 1.23759 0.95376 0.89274 0.94923 1.68158 1.32113 1.21554 1.02092 1.19133 0.88465 0.87828 0.88062 1.43296 1.29591 1.45879 1.18263 1.21523 0.97054 0.94273 0.98400 1.21648 0.99023 0.97168 0.97608 1.21517 0.97669 0.94941 1.01315 1.21523 0.98088 0.97942 0.98008 1.21566 0.98794 0.97930 0.97416 1.21619 0.97047 0.92881 1.02673 0.93613 0.78016 0.94941 0.95227 0.74788 0.81168 0.81107 0.72545 0.77382 0.90372 0.92059 0.91135 0.92173 0.92446 0.92727 0.92494 0.92329 0.92684 0.91255 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.64 9.99 -15.05 -0.15 -6.79 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.07 5.43 -59.91 -0.33 -18.40 16 10 C 0.14 2.73 5.60 -4.05 -0.02 2.71 16 11 C 0.14 2.28 2.16 -67.93 -0.15 2.14 16 12 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 13 N -0.68 -11.19 3.63 -54.79 -0.20 -11.39 16 14 C 0.59 9.78 6.14 -12.38 -0.08 9.70 16 15 O -0.55 -9.24 10.76 5.31 0.06 -9.18 16 16 C -0.04 -0.71 6.77 -82.65 -0.56 -1.26 16 17 N -0.36 -5.59 9.71 -9.49 -0.09 -5.68 16 18 C -0.02 -0.30 11.21 -17.39 -0.19 -0.49 16 19 C 0.13 1.41 11.22 -17.26 -0.19 1.22 16 20 N -0.52 -6.79 10.52 -11.99 -0.13 -6.92 16 21 C 0.41 5.91 7.77 -154.87 -1.20 4.71 16 22 N -0.82 -10.15 8.93 31.32 0.28 -9.87 16 23 C -0.09 -1.23 2.07 -90.62 -0.19 -1.42 16 24 C -0.12 -1.46 4.70 -26.73 -0.13 -1.59 16 25 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 26 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 27 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 28 C -0.10 -1.36 3.72 -26.73 -0.10 -1.46 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.39 10.34 7.33 -40.82 -0.30 10.04 16 31 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.03 0.56 6.17 -51.93 -0.32 0.24 16 33 H 0.42 7.19 7.96 -40.82 -0.32 6.87 16 34 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.43 5.70 5.32 -40.96 -0.22 5.48 16 37 H 0.40 3.93 8.95 -40.82 -0.37 3.56 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.81 7.60 -51.93 -0.39 0.42 16 40 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.98 7.53 -51.93 -0.39 0.58 16 48 H 0.06 0.86 5.77 -51.93 -0.30 0.56 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -31.78 375.50 -9.69 -41.47 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -7.11 Total: 21.71 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -3.53 Total: 2.76 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: 0.26 Total: -79.76 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.06 Total: -9.18 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.78 -9.69 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715397117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.201 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds