Wall clock time and date at job start Tue Mar 31 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00372 * 2 1 4 4 H 1.48502 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46974 * 300.00681 * 3 2 1 6 6 H 1.48504 * 109.46890 * 60.00420 * 3 2 1 7 7 C 1.38813 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00675 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00153 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47344 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47468 * 295.00652 * 11 10 9 13 13 N 1.46504 * 109.47110 * 54.99924 * 11 10 9 14 14 C 1.34771 * 120.00115 * 205.00213 * 13 11 10 15 15 O 1.21563 * 120.00134 * 359.97438 * 14 13 11 16 16 C 1.47731 * 119.99851 * 180.02562 * 14 13 11 17 17 N 1.33017 * 120.16366 * 354.67484 * 16 14 13 18 18 C 1.31723 * 120.01126 * 180.02562 * 17 16 14 19 19 C 1.38800 * 120.34333 * 0.02562 * 18 17 16 20 20 N 1.32028 * 120.32811 * 0.02562 * 19 18 17 21 21 C 1.32842 * 119.98079 * 359.66399 * 20 19 18 22 22 N 1.38265 * 120.16675 * 180.30073 * 21 20 19 23 23 C 1.52996 * 109.47464 * 175.00422 * 11 10 9 24 24 C 1.53000 * 109.46672 * 300.00069 * 23 11 10 25 25 C 1.53004 * 109.46971 * 180.02562 * 24 23 11 26 26 C 1.52995 * 109.47585 * 59.99674 * 25 24 23 27 27 C 1.53000 * 109.47239 * 300.00563 * 26 25 24 28 28 C 1.52999 * 109.47348 * 59.99598 * 27 26 25 29 29 H 0.97001 * 119.99774 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99734 * 359.97438 * 9 7 2 31 31 H 1.09008 * 109.47000 * 59.99893 * 10 9 7 32 32 H 1.08997 * 109.47635 * 300.00182 * 10 9 7 33 33 H 0.96997 * 119.99473 * 25.00578 * 13 11 10 34 34 H 1.08003 * 119.82773 * 179.97438 * 18 17 16 35 35 H 1.08005 * 119.84009 * 180.02562 * 19 18 17 36 36 H 0.97003 * 119.99550 * 185.69499 * 22 21 20 37 37 H 0.97001 * 120.00249 * 5.68979 * 22 21 20 38 38 H 1.08999 * 109.47215 * 59.99759 * 23 11 10 39 39 H 1.09002 * 109.47546 * 299.99804 * 24 23 11 40 40 H 1.08998 * 109.47547 * 60.00046 * 24 23 11 41 41 H 1.09007 * 109.47092 * 299.99612 * 25 24 23 42 42 H 1.09005 * 109.47264 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.47209 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47101 * 60.00130 * 26 25 24 45 45 H 1.09007 * 109.46569 * 299.99530 * 27 26 25 46 46 H 1.08994 * 109.47068 * 180.02562 * 27 26 25 47 47 H 1.08996 * 109.47145 * 180.02562 * 28 27 26 48 48 H 1.09002 * 109.46806 * 59.99938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.4984 -4.8138 0.9312 13 7 0.1428 -4.6758 -1.1311 14 6 -1.0815 -5.2366 -1.0785 15 8 -1.4217 -5.8622 -0.0933 16 6 -2.0098 -5.0919 -2.2186 17 7 -1.6831 -4.3221 -3.2530 18 6 -2.5133 -4.1948 -4.2677 19 6 -3.7313 -4.8604 -4.2649 20 7 -4.0697 -5.6271 -3.2447 21 6 -3.2397 -5.7696 -2.2174 22 7 -3.5875 -6.5765 -1.1498 23 6 1.8243 -6.1411 -0.1276 24 6 2.6176 -6.1494 -1.4358 25 6 3.3777 -7.4711 -1.5630 26 6 2.3831 -8.6337 -1.5623 27 6 1.5897 -8.6254 -0.2541 28 6 0.8295 -7.3037 -0.1270 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6853 -3.7150 0.8879 32 1 2.6839 -3.7143 -0.8921 33 1 0.4145 -4.1769 -1.9174 34 1 -2.2452 -3.5687 -5.1059 35 1 -4.4057 -4.7506 -5.1013 36 1 -3.0186 -6.6144 -0.3650 37 1 -4.4003 -7.1046 -1.1856 38 1 2.5093 -6.2482 0.7134 39 1 1.9325 -6.0423 -2.2769 40 1 3.3259 -5.3209 -1.4365 41 1 4.0628 -7.5786 -0.7220 42 1 3.9433 -7.4768 -2.4948 43 1 2.9246 -9.5752 -1.6534 44 1 1.6981 -8.5262 -2.4033 45 1 2.2748 -8.7329 0.5869 46 1 0.8815 -9.4539 -0.2535 47 1 0.2647 -7.2977 0.8052 48 1 0.1445 -7.1963 -0.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715397117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:39 Heat of formation + Delta-G solvation = -9.526719 kcal Electronic energy + Delta-G solvation = -30074.131066 eV Core-core repulsion = 26162.701547 eV Total energy + Delta-G solvation = -3911.429519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30464 -41.03910 -39.12080 -37.27431 -36.47242 -35.22722 -34.67384 -33.04325 -32.09166 -31.58446 -30.62019 -28.64471 -26.59454 -25.57010 -24.56852 -23.96864 -22.98557 -22.55979 -21.29833 -20.38103 -19.52786 -19.27283 -18.57847 -18.51007 -17.33304 -16.98090 -16.63018 -16.34127 -16.13496 -15.89176 -15.51000 -15.34860 -15.17487 -15.03433 -14.84422 -14.74151 -14.37993 -14.27431 -13.84048 -13.46117 -13.21984 -12.92602 -12.83449 -12.80987 -12.61556 -12.59893 -12.22858 -12.03148 -11.98930 -11.93149 -11.76467 -11.58509 -11.39620 -11.28535 -11.07723 -10.97885 -10.71256 -10.12216 -9.93071 -9.04913 -8.98359 -7.92669 -5.22082 -0.42884 0.31209 1.48230 1.48734 1.58884 1.74512 2.06935 2.50469 2.57022 2.88250 3.19285 3.40036 3.41859 3.59147 3.65459 3.78265 3.88080 4.09990 4.16512 4.19866 4.27631 4.29783 4.48166 4.49043 4.51040 4.58185 4.67733 4.69872 4.74863 4.81511 4.90907 5.04319 5.15873 5.23973 5.25837 5.32584 5.33401 5.34789 5.40715 5.49788 5.52100 5.58280 5.65004 5.99423 6.26964 6.27565 6.45018 6.62304 7.01799 7.22404 7.34699 8.08740 8.32113 9.30649 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008045 B = 0.004809 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.393218 B = 5821.594492 C = 8279.563972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.297 1.297 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.144 3.856 11 C 0.150 3.850 12 H 0.066 0.934 13 N -0.680 5.680 14 C 0.584 3.416 15 O -0.563 6.563 16 C -0.083 4.083 17 N -0.392 5.392 18 C -0.027 4.027 19 C 0.149 3.851 20 N -0.523 5.523 21 C 0.399 3.601 22 N -0.811 5.811 23 C -0.084 4.084 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.096 4.096 29 H 0.248 0.752 30 H 0.372 0.628 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.410 0.590 34 H 0.203 0.797 35 H 0.222 0.778 36 H 0.424 0.576 37 H 0.409 0.591 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -18.535 -8.611 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.018 3.982 11 C 0.045 3.955 12 H 0.084 0.916 13 N -0.327 5.327 14 C 0.371 3.629 15 O -0.444 6.444 16 C -0.229 4.229 17 N -0.108 5.108 18 C -0.194 4.194 19 C -0.017 4.017 20 N -0.247 5.247 21 C 0.156 3.844 22 N -0.364 5.364 23 C -0.104 4.104 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.134 4.134 29 H 0.057 0.943 30 H 0.204 0.796 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.246 0.754 34 H 0.219 0.781 35 H 0.238 0.762 36 H 0.269 0.731 37 H 0.239 0.761 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.652 -18.925 -7.702 20.499 hybrid contribution -0.345 1.422 0.066 1.465 sum -1.997 -17.503 -7.636 19.201 Atomic orbital electron populations 1.69856 1.06738 1.25749 1.59655 1.25545 0.96250 1.01063 1.03787 0.85088 0.78371 0.79922 0.76443 1.18778 1.22148 1.22473 1.19668 0.91557 0.85102 1.40855 0.90251 1.42524 1.05543 1.00992 1.89391 1.21178 0.93570 0.84030 0.99463 1.21244 0.90086 0.95183 0.88965 0.91591 1.45618 1.13685 1.52844 1.20578 1.17619 0.81600 0.78464 0.85209 1.90343 1.75975 1.44516 1.33532 1.21161 0.96479 1.06810 0.98459 1.68071 1.33518 1.09815 0.99433 1.24074 0.93084 1.03643 0.98576 1.24592 0.95352 0.86752 0.94989 1.68296 1.31804 1.22273 1.02346 1.19243 0.88385 0.87977 0.88808 1.43220 1.29849 1.45611 1.17676 1.21461 0.96972 0.92512 0.99441 1.21590 0.98628 0.98379 0.96411 1.21500 0.97617 0.93627 1.02294 1.21506 0.97885 0.98732 0.97149 1.21543 0.98944 0.96562 0.98268 1.21489 0.96728 0.94051 1.01137 0.94282 0.79600 0.94428 0.94007 0.75390 0.78064 0.76170 0.73097 0.76058 0.89370 0.93195 0.91627 0.91217 0.91403 0.90844 0.93398 0.91311 0.92101 0.92774 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 3 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 7 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -37.49 5.43 -343.46 -1.87 -39.36 16 10 C 0.14 5.58 5.60 86.38 0.48 6.07 16 11 C 0.15 5.07 2.16 44.99 0.10 5.17 16 12 H 0.07 2.53 7.58 -2.38 -0.02 2.51 16 13 N -0.68 -23.52 3.63 -445.53 -1.62 -25.14 16 14 C 0.58 20.42 6.14 86.75 0.53 20.95 16 15 O -0.56 -19.92 10.76 -3.91 -0.04 -19.96 16 16 C -0.08 -2.71 6.77 42.01 0.28 -2.43 16 17 N -0.39 -12.16 9.71 -183.95 -1.79 -13.95 16 18 C -0.03 -0.59 11.21 84.84 0.95 0.36 16 19 C 0.15 2.81 11.22 84.80 0.95 3.76 16 20 N -0.52 -13.06 10.52 -191.86 -2.02 -15.08 16 21 C 0.40 11.60 7.77 133.50 1.04 12.63 16 22 N -0.81 -20.54 8.93 -54.83 -0.49 -21.03 16 23 C -0.08 -2.23 2.07 -10.79 -0.02 -2.26 16 24 C -0.11 -2.73 4.70 30.60 0.14 -2.59 16 25 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 26 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 27 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 28 C -0.10 -2.52 3.72 30.60 0.11 -2.41 16 29 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.37 20.72 7.33 -92.71 -0.68 20.04 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.04 1.55 6.17 -2.39 -0.01 1.54 16 33 H 0.41 14.92 7.96 -92.71 -0.74 14.18 16 34 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.42 11.78 5.32 -94.96 -0.51 11.27 16 37 H 0.41 8.07 8.95 -92.71 -0.83 7.24 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 40 H 0.07 1.64 6.32 -2.39 -0.02 1.63 16 41 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.57 7.53 -2.39 -0.02 1.55 16 48 H 0.04 1.27 5.77 -2.39 -0.01 1.26 16 Total: -1.00 -70.21 375.50 -0.81 -71.02 By element: Atomic # 1 Polarization: 60.15 SS G_CDS: -1.73 Total: 58.42 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.42 Total: 16.76 kcal Atomic # 7 Polarization: -167.11 SS G_CDS: -7.50 Total: -174.60 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -70.21 -0.81 -71.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715397117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.494 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds