Wall clock time and date at job start Tue Mar 31 2020 17:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47345 * 269.99889 * 3 2 1 5 5 H 1.48499 * 109.47092 * 29.99880 * 3 2 1 6 6 H 1.48498 * 109.47516 * 149.99828 * 3 2 1 7 7 C 1.38813 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99707 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00255 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99783 * 173.80806 * 9 7 2 11 11 C 1.53004 * 112.84702 * 294.77900 * 10 9 7 12 12 N 1.46501 * 109.47061 * 292.02940 * 11 10 9 13 13 C 1.34775 * 119.99685 * 175.91380 * 12 11 10 14 14 O 1.21284 * 120.00171 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99890 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47168 * 179.97438 * 15 13 12 17 17 N 1.29109 * 126.00950 * 269.97849 * 16 15 13 18 18 N 1.29019 * 110.26071 * 179.97438 * 17 16 15 19 19 C 1.32915 * 108.63487 * 359.97438 * 18 17 16 20 20 C 1.34404 * 126.00755 * 89.99839 * 16 15 13 21 21 C 1.50533 * 129.25148 * 0.38368 * 20 16 15 22 22 C 1.53353 * 108.36739 * 163.57240 * 21 20 16 23 23 C 1.53108 * 109.62772 * 49.52582 * 22 21 20 24 24 C 1.50598 * 129.15907 * 180.21162 * 19 18 17 25 25 C 1.53779 * 113.69303 * 66.05382 * 10 9 7 26 26 C 1.53781 * 87.08220 * 89.12571 * 25 10 9 27 27 C 1.53777 * 87.08118 * 25.43126 * 26 25 10 28 28 H 0.97001 * 119.99829 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99884 * 353.80340 * 9 7 2 30 30 H 1.09003 * 109.46775 * 172.02804 * 11 10 9 31 31 H 1.08993 * 109.46671 * 52.03004 * 11 10 9 32 32 H 0.96994 * 120.00126 * 355.91699 * 12 11 10 33 33 H 1.08998 * 109.47349 * 60.00342 * 15 13 12 34 34 H 1.08997 * 109.47163 * 299.99972 * 15 13 12 35 35 H 1.08998 * 109.69437 * 283.21175 * 21 20 16 36 36 H 1.09001 * 109.69832 * 43.79657 * 21 20 16 37 37 H 1.09008 * 109.34965 * 289.52078 * 22 21 20 38 38 H 1.08993 * 109.49327 * 169.61899 * 22 21 20 39 39 H 1.08995 * 109.45478 * 169.97611 * 23 22 21 40 40 H 1.08996 * 109.45640 * 50.03686 * 23 22 21 41 41 H 1.08994 * 109.69440 * 283.16260 * 24 19 18 42 42 H 1.09001 * 109.69267 * 43.70889 * 24 19 18 43 43 H 1.09006 * 113.61085 * 203.67847 * 25 10 9 44 44 H 1.09003 * 113.61305 * 334.57031 * 25 10 9 45 45 H 1.08998 * 113.60962 * 270.87889 * 26 25 10 46 46 H 1.09001 * 113.60814 * 139.98079 * 26 25 10 47 47 H 1.08993 * 113.61452 * 220.01834 * 27 26 25 48 48 H 1.09002 * 113.61295 * 89.11888 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4635 0.1385 11 6 3.8967 -3.1303 1.4986 12 7 4.5229 -2.3185 2.5451 13 6 4.3902 -2.6690 3.8397 14 8 3.7522 -3.6562 4.1384 15 6 5.0338 -1.8336 4.9162 16 7 4.7443 -2.4193 6.2274 17 7 3.7285 -2.1428 6.9748 18 7 3.7732 -2.8342 8.0632 19 6 4.8600 -3.5989 8.0363 20 6 5.4898 -3.3388 6.8640 21 6 6.7767 -3.9882 6.4301 22 6 7.4279 -4.6377 7.6572 23 6 6.3950 -5.4939 8.3949 24 6 5.3560 -4.5830 9.0626 25 6 3.9265 -3.4187 -1.0523 26 6 5.1376 -2.7242 -1.6970 27 6 5.5908 -2.3650 -0.2721 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3670 -0.0896 30 1 4.3460 -4.1234 1.4915 31 1 2.8283 -3.2163 1.6959 32 1 5.0328 -1.5287 2.3063 33 1 4.6359 -0.8196 4.8759 34 1 6.1121 -1.8072 4.7597 35 1 6.5686 -4.7507 5.6796 36 1 7.4459 -3.2353 6.0137 37 1 7.7974 -3.8591 8.3246 38 1 8.2591 -5.2663 7.3379 39 1 6.8961 -6.0916 9.1563 40 1 5.8972 -6.1543 7.6849 41 1 5.8156 -4.0473 9.8931 42 1 4.5230 -5.1831 9.4287 43 1 4.1041 -4.4652 -0.8043 44 1 2.9941 -3.2637 -1.5952 45 1 4.8726 -1.8575 -2.3025 46 1 5.8121 -3.4100 -2.2099 47 1 6.0020 -1.3594 -0.1852 48 1 6.2234 -3.1234 0.1891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724793044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:15 Heat of formation + Delta-G solvation = 90.821935 kcal Electronic energy + Delta-G solvation = -29170.400606 eV Core-core repulsion = 25263.322531 eV Total energy + Delta-G solvation = -3907.078075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.41761 -39.86354 -38.73614 -37.27174 -34.84789 -34.24158 -33.38524 -30.92980 -30.65441 -30.23371 -29.15113 -26.97423 -25.47836 -24.33298 -23.74767 -22.82426 -22.25188 -21.45157 -20.37714 -19.76518 -18.50649 -17.82594 -17.62816 -17.41709 -16.09314 -15.68750 -15.55959 -15.11577 -14.99310 -14.43109 -14.33903 -14.23361 -14.14109 -13.96769 -13.79009 -13.56196 -13.16576 -12.94819 -12.76396 -12.39009 -12.23768 -11.99186 -11.59352 -11.57631 -11.39774 -11.29632 -11.26948 -11.23393 -11.02333 -10.56356 -10.53828 -10.46581 -10.36749 -10.25820 -9.80486 -9.66022 -9.61253 -9.00913 -8.84360 -8.82920 -7.43347 -5.86699 -3.25771 1.50444 2.13173 2.53327 2.57552 3.24089 3.26126 3.28241 3.36813 4.00034 4.26677 4.43642 4.47353 4.51107 4.56845 4.66204 4.70541 4.76259 4.86415 4.95860 5.06830 5.10386 5.19152 5.19977 5.23552 5.31079 5.33237 5.51466 5.58640 5.60543 5.68446 5.80244 5.85235 5.89021 5.93626 5.99370 5.99539 6.08273 6.10428 6.21840 6.36624 6.46990 6.52045 6.65178 6.71470 6.83226 7.54512 7.88542 8.20359 8.31526 8.55424 9.07533 9.78791 9.96091 11.30991 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.003075 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.536056 B = 9103.840722 C =10220.865581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.179 3.821 11 C 0.120 3.880 12 N -0.699 5.699 13 C 0.497 3.503 14 O -0.526 6.526 15 C 0.092 3.908 16 N -0.265 5.265 17 N -0.079 5.079 18 N -0.262 5.262 19 C -0.024 4.024 20 C -0.010 4.010 21 C -0.046 4.046 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.031 4.031 25 C -0.147 4.147 26 C -0.130 4.130 27 C -0.147 4.147 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.543 -7.929 10.224 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.186 4.186 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.366 5.366 10 C 0.086 3.914 11 C -0.005 4.005 12 N -0.349 5.349 13 C 0.280 3.720 14 O -0.401 6.401 15 C -0.033 4.033 16 N -0.056 5.056 17 N -0.057 5.057 18 N -0.127 5.127 19 C -0.164 4.164 20 C -0.144 4.144 21 C -0.086 4.086 22 C -0.151 4.151 23 C -0.159 4.159 24 C -0.070 4.070 25 C -0.187 4.187 26 C -0.167 4.167 27 C -0.185 4.185 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.466 -7.802 10.558 23.479 hybrid contribution 1.454 1.304 -0.587 2.040 sum 20.920 -6.498 9.971 24.068 Atomic orbital electron populations 1.69693 1.05143 1.25962 1.56512 1.24689 0.95161 0.97135 1.01604 0.86602 0.79112 0.85281 0.77689 1.21122 1.21728 1.20426 1.18909 0.80100 0.94726 1.43833 0.89068 1.42393 1.03971 1.01701 1.88532 1.20746 0.90925 0.88708 0.90997 1.21948 0.99208 0.92433 0.86909 1.45646 1.53937 1.30312 1.05027 1.20226 0.81904 0.86054 0.83850 1.90795 1.40306 1.27056 1.81986 1.21898 1.03493 0.99665 0.78294 1.46277 1.16594 1.27921 1.14777 1.78663 1.06934 1.21432 0.98661 1.74803 1.17780 1.07026 1.13058 1.21594 0.94711 1.02827 0.97239 1.21719 0.99502 0.97702 0.95456 1.20183 0.89989 0.99214 0.99180 1.21551 0.97993 0.99469 0.96075 1.21651 0.96386 0.97772 1.00057 1.19927 0.98448 0.94025 0.94568 1.23280 0.99404 0.97607 0.98451 1.22650 0.97744 1.00616 0.95697 1.23204 0.96283 1.01266 0.97777 0.92886 0.80341 0.92353 0.90284 0.76650 0.84488 0.85280 0.89550 0.90343 0.91249 0.90555 0.90656 0.91239 0.90171 0.89877 0.90986 0.90161 0.90098 0.92396 0.91832 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 20.82 27.68 -169.99 -4.70 16.11 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -5.92 6.61 56.52 0.37 -5.55 16 7 C -0.25 -6.41 9.53 -15.06 -0.14 -6.55 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 9 N -0.72 -14.89 4.98 -46.47 -0.23 -15.12 16 10 C 0.18 2.91 0.82 -131.00 -0.11 2.80 16 11 C 0.12 1.99 5.08 -4.04 -0.02 1.97 16 12 N -0.70 -9.88 5.44 -60.29 -0.33 -10.21 16 13 C 0.50 7.52 7.90 -10.99 -0.09 7.43 16 14 O -0.53 -10.48 16.43 5.55 0.09 -10.39 16 15 C 0.09 1.04 6.72 -5.19 -0.03 1.00 16 16 N -0.26 -3.84 2.82 -58.43 -0.16 -4.01 16 17 N -0.08 -1.42 13.19 60.35 0.80 -0.63 16 18 N -0.26 -4.58 12.40 33.16 0.41 -4.17 16 19 C -0.02 -0.33 7.11 -83.12 -0.59 -0.93 16 20 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 21 C -0.05 -0.38 5.97 -27.78 -0.17 -0.55 16 22 C -0.11 -0.71 5.89 -26.49 -0.16 -0.87 16 23 C -0.12 -0.86 5.90 -26.43 -0.16 -1.01 16 24 C -0.03 -0.29 6.30 -27.69 -0.17 -0.46 16 25 C -0.15 -2.29 7.28 -25.92 -0.19 -2.48 16 26 C -0.13 -1.73 7.99 -25.92 -0.21 -1.94 16 27 C -0.15 -1.83 6.98 -25.92 -0.18 -2.01 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.36 7.29 5.80 -40.82 -0.24 7.06 16 30 H 0.06 0.88 8.01 -51.93 -0.42 0.47 16 31 H 0.08 1.66 7.80 -51.93 -0.41 1.25 16 32 H 0.40 4.68 8.23 -40.82 -0.34 4.34 16 33 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.13 0.83 7.71 -51.93 -0.40 0.43 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 37 H 0.07 0.42 8.12 -51.92 -0.42 -0.01 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 44 H 0.08 1.47 7.87 -51.93 -0.41 1.06 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 48 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -36.38 388.72 -8.04 -44.43 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.68 Total: 9.80 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.87 Total: -4.07 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 1.26 Total: -61.73 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.70 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.38 -8.04 -44.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724793044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.251 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds