Wall clock time and date at job start Tue Mar 31 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47345 * 269.99889 * 3 2 1 5 5 H 1.48499 * 109.47092 * 29.99880 * 3 2 1 6 6 H 1.48498 * 109.47516 * 149.99828 * 3 2 1 7 7 C 1.38813 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99707 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00255 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99783 * 173.80806 * 9 7 2 11 11 C 1.53004 * 112.84702 * 294.77900 * 10 9 7 12 12 N 1.46501 * 109.47061 * 292.02940 * 11 10 9 13 13 C 1.34775 * 119.99685 * 175.91380 * 12 11 10 14 14 O 1.21284 * 120.00171 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99890 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47168 * 179.97438 * 15 13 12 17 17 N 1.29109 * 126.00950 * 269.97849 * 16 15 13 18 18 N 1.29019 * 110.26071 * 179.97438 * 17 16 15 19 19 C 1.32915 * 108.63487 * 359.97438 * 18 17 16 20 20 C 1.34404 * 126.00755 * 89.99839 * 16 15 13 21 21 C 1.50533 * 129.25148 * 0.38368 * 20 16 15 22 22 C 1.53353 * 108.36739 * 163.57240 * 21 20 16 23 23 C 1.53108 * 109.62772 * 49.52582 * 22 21 20 24 24 C 1.50598 * 129.15907 * 180.21162 * 19 18 17 25 25 C 1.53779 * 113.69303 * 66.05382 * 10 9 7 26 26 C 1.53781 * 87.08220 * 89.12571 * 25 10 9 27 27 C 1.53777 * 87.08118 * 25.43126 * 26 25 10 28 28 H 0.97001 * 119.99829 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99884 * 353.80340 * 9 7 2 30 30 H 1.09003 * 109.46775 * 172.02804 * 11 10 9 31 31 H 1.08993 * 109.46671 * 52.03004 * 11 10 9 32 32 H 0.96994 * 120.00126 * 355.91699 * 12 11 10 33 33 H 1.08998 * 109.47349 * 60.00342 * 15 13 12 34 34 H 1.08997 * 109.47163 * 299.99972 * 15 13 12 35 35 H 1.08998 * 109.69437 * 283.21175 * 21 20 16 36 36 H 1.09001 * 109.69832 * 43.79657 * 21 20 16 37 37 H 1.09008 * 109.34965 * 289.52078 * 22 21 20 38 38 H 1.08993 * 109.49327 * 169.61899 * 22 21 20 39 39 H 1.08995 * 109.45478 * 169.97611 * 23 22 21 40 40 H 1.08996 * 109.45640 * 50.03686 * 23 22 21 41 41 H 1.08994 * 109.69440 * 283.16260 * 24 19 18 42 42 H 1.09001 * 109.69267 * 43.70889 * 24 19 18 43 43 H 1.09006 * 113.61085 * 203.67847 * 25 10 9 44 44 H 1.09003 * 113.61305 * 334.57031 * 25 10 9 45 45 H 1.08998 * 113.60962 * 270.87889 * 26 25 10 46 46 H 1.09001 * 113.60814 * 139.98079 * 26 25 10 47 47 H 1.08993 * 113.61452 * 220.01834 * 27 26 25 48 48 H 1.09002 * 113.61295 * 89.11888 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4635 0.1385 11 6 3.8967 -3.1303 1.4986 12 7 4.5229 -2.3185 2.5451 13 6 4.3902 -2.6690 3.8397 14 8 3.7522 -3.6562 4.1384 15 6 5.0338 -1.8336 4.9162 16 7 4.7443 -2.4193 6.2274 17 7 3.7285 -2.1428 6.9748 18 7 3.7732 -2.8342 8.0632 19 6 4.8600 -3.5989 8.0363 20 6 5.4898 -3.3388 6.8640 21 6 6.7767 -3.9882 6.4301 22 6 7.4279 -4.6377 7.6572 23 6 6.3950 -5.4939 8.3949 24 6 5.3560 -4.5830 9.0626 25 6 3.9265 -3.4187 -1.0523 26 6 5.1376 -2.7242 -1.6970 27 6 5.5908 -2.3650 -0.2721 28 1 -0.4850 0.8401 -0.0004 29 1 3.8647 -0.3670 -0.0896 30 1 4.3460 -4.1234 1.4915 31 1 2.8283 -3.2163 1.6959 32 1 5.0328 -1.5287 2.3063 33 1 4.6359 -0.8196 4.8759 34 1 6.1121 -1.8072 4.7597 35 1 6.5686 -4.7507 5.6796 36 1 7.4459 -3.2353 6.0137 37 1 7.7974 -3.8591 8.3246 38 1 8.2591 -5.2663 7.3379 39 1 6.8961 -6.0916 9.1563 40 1 5.8972 -6.1543 7.6849 41 1 5.8156 -4.0473 9.8931 42 1 4.5230 -5.1831 9.4287 43 1 4.1041 -4.4652 -0.8043 44 1 2.9941 -3.2637 -1.5952 45 1 4.8726 -1.8575 -2.3025 46 1 5.8121 -3.4100 -2.2099 47 1 6.0020 -1.3594 -0.1852 48 1 6.2234 -3.1234 0.1891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724793044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:14 Heat of formation + Delta-G solvation = 62.846484 kcal Electronic energy + Delta-G solvation = -29171.613713 eV Core-core repulsion = 25263.322531 eV Total energy + Delta-G solvation = -3908.291182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.45467 -41.13389 -40.01213 -37.94775 -35.89235 -35.53009 -35.28030 -32.61314 -31.64323 -31.11340 -30.24780 -28.19936 -26.71149 -25.53584 -25.08921 -23.63862 -23.46821 -22.62698 -21.51695 -20.52283 -19.96790 -19.61773 -18.86897 -18.41273 -17.11683 -16.96767 -16.74802 -16.28633 -16.18397 -15.94777 -15.60669 -14.96758 -14.91032 -14.80780 -14.74742 -14.72044 -14.57005 -14.47727 -14.13872 -13.46192 -13.19584 -13.10554 -13.04093 -12.98966 -12.57667 -12.54883 -12.23217 -12.22306 -11.97421 -11.81928 -11.80883 -11.64224 -11.59144 -11.49631 -11.32732 -11.00085 -10.91997 -10.72952 -10.15941 -9.83333 -9.32429 -8.01828 -5.37460 0.46207 1.20815 1.34462 1.36662 1.41654 1.49156 1.50554 2.14729 2.48572 3.18453 3.27131 3.42491 3.47047 3.55442 3.71709 3.74467 3.88215 3.91202 3.96076 4.01578 4.03847 4.11990 4.16917 4.44457 4.57536 4.58474 4.59658 4.62416 4.70177 4.85294 4.92207 4.92920 4.99853 5.03051 5.09849 5.14317 5.21282 5.23516 5.25968 5.33942 5.36177 5.43242 5.47215 5.57397 5.64323 5.82593 6.21643 6.40834 7.07358 7.09047 7.45276 7.81984 8.01932 9.20110 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.003075 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.536056 B = 9103.840722 C =10220.865581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.070 4.070 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.233 1.233 7 C -0.216 4.216 8 H 0.044 0.956 9 N -0.722 5.722 10 C 0.160 3.840 11 C 0.131 3.869 12 N -0.687 5.687 13 C 0.496 3.504 14 O -0.582 6.582 15 C 0.092 3.908 16 N -0.268 5.268 17 N -0.136 5.136 18 N -0.302 5.302 19 C -0.044 4.044 20 C -0.002 4.002 21 C -0.048 4.048 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.033 4.033 25 C -0.156 4.156 26 C -0.122 4.122 27 C -0.120 4.120 28 H 0.255 0.745 29 H 0.371 0.629 30 H 0.077 0.923 31 H 0.019 0.981 32 H 0.416 0.584 33 H 0.150 0.850 34 H 0.190 0.810 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.842 -7.750 10.256 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.261 4.261 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.236 1.236 6 H -0.156 1.156 7 C -0.347 4.347 8 H 0.062 0.938 9 N -0.365 5.365 10 C 0.069 3.931 11 C 0.005 3.995 12 N -0.338 5.338 13 C 0.281 3.719 14 O -0.462 6.462 15 C -0.032 4.032 16 N -0.059 5.059 17 N -0.113 5.113 18 N -0.166 5.166 19 C -0.185 4.185 20 C -0.136 4.136 21 C -0.087 4.087 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.072 4.072 25 C -0.196 4.196 26 C -0.159 4.159 27 C -0.157 4.157 28 H 0.063 0.937 29 H 0.206 0.794 30 H 0.095 0.905 31 H 0.038 0.962 32 H 0.253 0.747 33 H 0.168 0.832 34 H 0.207 0.793 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 25.849 -7.617 10.573 28.948 hybrid contribution -0.542 1.031 -0.623 1.321 sum 25.307 -6.587 9.950 27.979 Atomic orbital electron populations 1.69923 1.07676 1.26540 1.59881 1.25598 0.96015 1.01658 1.02785 0.85397 0.79181 0.79038 0.78036 1.20588 1.23612 1.15596 1.18731 0.82677 0.92680 1.40593 0.93762 1.42252 1.01881 1.03900 1.88425 1.21110 0.94152 0.87107 0.90709 1.21675 0.96067 0.94066 0.87698 1.45505 1.53367 1.30478 1.04423 1.20901 0.80912 0.85520 0.84597 1.90779 1.42788 1.29819 1.82844 1.22250 1.06633 0.98739 0.75535 1.46547 1.15957 1.28130 1.15257 1.78562 1.09222 1.23618 0.99916 1.74713 1.19790 1.08330 1.13764 1.22418 0.93988 1.03049 0.99046 1.22556 1.00337 0.96177 0.94554 1.20484 0.88218 0.99772 1.00186 1.21599 0.98061 0.99798 0.95211 1.21675 0.95991 0.97402 1.00487 1.20138 0.99040 0.93643 0.94350 1.23359 0.98963 0.99082 0.98150 1.22606 0.96601 1.00247 0.96489 1.23153 0.92894 1.03586 0.96111 0.93660 0.79412 0.90484 0.96244 0.74652 0.83205 0.79293 0.89745 0.87019 0.90422 0.87768 0.88010 0.92630 0.88640 0.90684 0.88899 0.94395 0.91592 0.89377 0.89846 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.13 13.97 21.65 0.30 -63.82 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 43.06 27.68 68.60 1.90 44.96 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.31 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.23 -8.60 6.61 99.48 0.66 -7.94 16 7 C -0.22 -11.67 9.53 84.03 0.80 -10.87 16 8 H 0.04 2.77 8.06 -2.91 -0.02 2.74 16 9 N -0.72 -29.00 4.98 -300.95 -1.50 -30.50 16 10 C 0.16 4.94 0.82 4.13 0.00 4.94 16 11 C 0.13 4.27 5.08 86.38 0.44 4.71 16 12 N -0.69 -17.87 5.44 -463.05 -2.52 -20.38 16 13 C 0.50 14.33 7.90 87.66 0.69 15.02 16 14 O -0.58 -23.68 16.43 -3.04 -0.05 -23.73 16 15 C 0.09 1.83 6.72 85.63 0.58 2.40 16 16 N -0.27 -7.52 2.82 -338.79 -0.95 -8.47 16 17 N -0.14 -5.06 13.19 37.02 0.49 -4.57 16 18 N -0.30 -11.02 12.40 -48.99 -0.61 -11.62 16 19 C -0.04 -1.22 7.11 41.75 0.30 -0.92 16 20 C 0.00 -0.04 6.76 41.50 0.28 0.24 16 21 C -0.05 -0.60 5.97 29.91 0.18 -0.42 16 22 C -0.11 -0.91 5.89 30.75 0.18 -0.73 16 23 C -0.12 -1.36 5.90 30.79 0.18 -1.18 16 24 C -0.03 -0.59 6.30 29.97 0.19 -0.40 16 25 C -0.16 -4.69 7.28 31.12 0.23 -4.46 16 26 C -0.12 -2.81 7.99 31.12 0.25 -2.56 16 27 C -0.12 -2.36 6.98 31.12 0.22 -2.15 16 28 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.37 13.76 5.80 -92.71 -0.54 13.22 16 30 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 31 H 0.02 0.86 7.80 -2.39 -0.02 0.84 16 32 H 0.42 7.98 8.23 -92.71 -0.76 7.22 16 33 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.19 1.34 7.71 -2.39 -0.02 1.32 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.11 0.70 7.87 -2.39 -0.02 0.68 16 37 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 0.80 8.12 -2.39 -0.02 0.79 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 2.38 8.01 -2.38 -0.02 2.36 16 44 H 0.04 1.44 7.87 -2.39 -0.02 1.42 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 48 H 0.11 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -91.10 388.72 1.67 -89.43 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.37 Total: 28.64 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 4.98 Total: 0.07 kcal Atomic # 7 Polarization: -134.58 SS G_CDS: -4.79 Total: -139.37 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.90 Total: 44.96 kcal Total: -91.10 1.67 -89.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724793044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.274 kcal (2) G-P(sol) polarization free energy of solvation -91.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds