Wall clock time and date at job start Tue Mar 31 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00524 * 3 2 1 5 5 H 1.48505 * 109.46931 * 30.00249 * 3 2 1 6 6 H 1.48494 * 109.47031 * 150.00276 * 3 2 1 7 7 C 1.38815 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00237 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47351 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.53406 * 307.60591 * 11 10 9 13 13 C 1.54886 * 110.48704 * 70.21553 * 11 10 9 14 14 C 1.54894 * 102.74731 * 156.61963 * 13 11 10 15 15 C 1.54259 * 104.19724 * 322.06427 * 14 13 11 16 16 C 1.53884 * 106.60140 * 23.60476 * 15 14 13 17 17 H 1.09000 * 110.03132 * 119.33200 * 16 15 14 18 18 N 1.46499 * 110.03428 * 240.71862 * 16 15 14 19 19 C 1.34777 * 119.99665 * 273.82208 * 18 16 15 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 16 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 16 22 22 N 1.46509 * 109.47002 * 179.97438 * 21 19 18 23 23 C 1.35309 * 125.86840 * 124.99417 * 22 21 19 24 24 C 1.35348 * 106.17431 * 179.97438 * 23 22 21 25 25 C 1.50702 * 126.75330 * 180.02562 * 24 23 22 26 26 C 1.52999 * 117.49852 * 343.63200 * 25 24 23 27 27 C 1.52994 * 117.49930 * 275.00790 * 25 24 23 28 28 N 1.33773 * 106.49774 * 0.02562 * 24 23 22 29 29 N 1.28635 * 108.88456 * 359.73031 * 28 24 23 30 30 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99706 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47536 * 59.99291 * 10 9 7 33 33 H 1.09006 * 109.46734 * 299.99289 * 10 9 7 34 34 H 1.09002 * 110.75588 * 38.31755 * 13 11 10 35 35 H 1.08993 * 110.91991 * 275.01088 * 13 11 10 36 36 H 1.08990 * 110.48910 * 203.37862 * 14 13 11 37 37 H 1.09001 * 110.59567 * 80.79362 * 14 13 11 38 38 H 1.08998 * 110.03394 * 264.32094 * 15 14 13 39 39 H 1.09001 * 110.03773 * 142.88932 * 15 14 13 40 40 H 0.97001 * 119.99790 * 93.53921 * 18 16 15 41 41 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 42 42 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 43 43 H 1.07999 * 126.91206 * 359.97438 * 23 22 21 44 44 H 1.09001 * 115.55004 * 129.33205 * 25 24 23 45 45 H 1.09005 * 117.49624 * 359.97438 * 26 25 24 46 46 H 1.08994 * 117.50249 * 145.01618 * 26 25 24 47 47 H 1.09009 * 117.49494 * 214.97693 * 27 25 24 48 48 H 1.08992 * 117.50231 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8198 -0.0022 12 1 0.3415 -4.7058 0.8062 13 6 0.3387 -4.9124 -1.3678 14 6 -0.1118 -6.3936 -1.4158 15 6 1.0595 -7.1663 -0.7752 16 6 1.8071 -6.1656 0.1236 17 1 1.7891 -6.5075 1.1585 18 7 3.1916 -6.0188 -0.3321 19 6 4.1383 -6.8739 0.1025 20 8 3.8451 -7.7618 0.8749 21 6 5.5614 -6.7266 -0.3711 22 7 6.3900 -7.7683 0.2409 23 6 7.1685 -8.6540 -0.4229 24 6 7.7524 -9.4258 0.5233 25 6 8.7141 -10.5628 0.2922 26 6 8.7908 -11.1473 -1.1197 27 6 8.1201 -11.9426 0.0022 28 7 7.3080 -8.9808 1.7040 29 7 6.5067 -7.9949 1.5025 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6840 -3.7150 0.8887 33 1 2.6852 -3.7142 -0.8913 34 1 1.0249 -4.6908 -2.1853 35 1 -0.5228 -4.2454 -1.3970 36 1 -0.2615 -6.7136 -2.4469 37 1 -1.0245 -6.5357 -0.8370 38 1 1.7269 -7.5427 -1.5504 39 1 0.6782 -7.9934 -0.1763 40 1 3.4261 -5.3086 -0.9499 41 1 5.5952 -6.8256 -1.4561 42 1 5.9404 -5.7459 -0.0838 43 1 7.2979 -8.7297 -1.4924 44 1 9.6365 -10.5236 0.8718 45 1 8.1454 -10.7097 -1.8813 46 1 9.7637 -11.4926 -1.4693 47 1 8.6519 -12.8112 0.3907 48 1 7.0338 -12.0281 -0.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732615006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:54 Heat of formation + Delta-G solvation = 101.347526 kcal Electronic energy + Delta-G solvation = -28216.048607 eV Core-core repulsion = 24309.426956 eV Total energy + Delta-G solvation = -3906.621651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45049 -40.27874 -38.21814 -37.56504 -34.63195 -34.46447 -33.68511 -31.51038 -30.90964 -29.48182 -28.66283 -27.24057 -24.61628 -24.34095 -23.12832 -22.43131 -22.36221 -21.16907 -20.50896 -20.38181 -19.38592 -17.97395 -17.79702 -17.11833 -16.47511 -15.91642 -15.70332 -15.45785 -15.10817 -14.88369 -14.75144 -14.60724 -14.34180 -13.86452 -13.68019 -13.17000 -13.07246 -12.91868 -12.67307 -12.37556 -11.92206 -11.73895 -11.64136 -11.40863 -11.35274 -11.05481 -10.97700 -10.93668 -10.88490 -10.60045 -10.58405 -10.51731 -10.44711 -10.42348 -10.06300 -9.87490 -9.76421 -9.22262 -9.15602 -8.95068 -7.00864 -5.83992 -3.13221 1.37592 1.93329 2.31020 2.35380 2.98065 3.37913 3.43169 3.43561 3.45316 3.91803 4.21030 4.30342 4.48162 4.50093 4.52128 4.57027 4.59703 4.64880 4.71996 4.89479 4.96525 5.06368 5.25606 5.35975 5.44500 5.46946 5.53444 5.55204 5.56901 5.67681 5.72590 5.75155 5.81011 5.81771 5.93807 5.95725 5.97953 6.12598 6.17921 6.27108 6.38444 6.44753 6.48452 6.64342 6.70548 7.29841 7.61346 7.96895 8.34452 8.40721 9.46030 10.02821 10.37187 11.38577 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002353 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.425403 B =11895.256410 C =13277.609314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.164 3.836 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.112 4.112 14 C -0.126 4.126 15 C -0.130 4.130 16 C 0.150 3.850 17 H 0.090 0.910 18 N -0.710 5.710 19 C 0.501 3.499 20 O -0.514 6.514 21 C 0.093 3.907 22 N -0.279 5.279 23 C -0.050 4.050 24 C 0.008 3.992 25 C -0.070 4.070 26 C -0.170 4.170 27 C -0.166 4.166 28 N -0.266 5.266 29 N -0.048 5.048 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.407 0.593 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.188 0.812 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -20.845 -7.735 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.036 3.964 11 C -0.126 4.126 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.046 3.954 17 H 0.108 0.892 18 N -0.365 5.365 19 C 0.284 3.716 20 O -0.388 6.388 21 C -0.032 4.032 22 N -0.072 5.072 23 C -0.200 4.200 24 C -0.129 4.129 25 C -0.090 4.090 26 C -0.208 4.208 27 C -0.203 4.203 28 N -0.133 5.133 29 N -0.028 5.028 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.244 0.756 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.205 0.795 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.716 -20.896 -5.741 24.635 hybrid contribution 0.445 1.218 -1.508 1.989 sum 12.162 -19.678 -7.250 24.243 Atomic orbital electron populations 1.69652 1.05109 1.25749 1.57424 1.24749 0.95535 0.97742 1.02838 0.86197 0.78692 0.83833 0.77491 1.21707 1.21721 1.20767 1.19185 0.90949 0.84138 1.43088 0.91269 1.42328 1.05896 0.99764 1.89341 1.20575 0.93070 0.85455 0.97288 1.22484 0.98105 0.93042 0.98962 0.89217 1.22508 1.00600 0.95279 0.96603 1.22391 0.97763 0.95867 1.00308 1.22563 0.97468 0.97996 0.98876 1.21675 0.79150 0.95726 0.98894 0.89166 1.46154 1.08709 1.32870 1.48736 1.20149 0.86419 0.82965 0.82093 1.90825 1.81525 1.32919 1.33563 1.21940 0.89591 0.91612 1.00092 1.46725 1.30396 1.24010 1.06074 1.23218 1.00193 0.95758 1.00795 1.20977 1.02393 1.00176 0.89403 1.19983 0.98274 0.90703 1.00084 1.23015 1.02883 1.03727 0.91178 1.23005 1.00987 0.94056 1.02268 1.75096 1.08600 1.06021 1.23544 1.78494 1.14649 1.12943 0.96672 0.93445 0.78150 0.96174 0.96871 0.91458 0.90701 0.91883 0.91556 0.91698 0.91417 0.75581 0.84688 0.84921 0.79456 0.86054 0.88630 0.87951 0.88077 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.25 5.49 -59.91 -0.33 -17.58 16 10 C 0.16 2.92 4.72 -4.04 -0.02 2.90 16 11 C -0.11 -1.54 2.85 -88.96 -0.25 -1.80 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.11 -1.50 6.19 -24.74 -0.15 -1.65 16 14 C -0.13 -1.38 6.83 -25.07 -0.17 -1.55 16 15 C -0.13 -1.47 6.58 -25.61 -0.17 -1.63 16 16 C 0.15 1.90 3.09 -66.81 -0.21 1.70 16 17 H 0.09 1.30 7.61 -51.93 -0.40 0.91 16 18 N -0.71 -7.82 4.38 -52.72 -0.23 -8.05 16 19 C 0.50 5.98 7.83 -10.99 -0.09 5.89 16 20 O -0.51 -8.52 15.37 5.55 0.09 -8.44 16 21 C 0.09 0.76 6.94 -5.19 -0.04 0.73 16 22 N -0.28 -3.23 3.19 -62.44 -0.20 -3.43 16 23 C -0.05 -0.47 10.89 -17.05 -0.19 -0.66 16 24 C 0.01 0.09 6.88 -82.78 -0.57 -0.48 16 25 C -0.07 -0.59 6.33 -91.77 -0.58 -1.17 16 26 C -0.17 -0.96 10.02 -26.73 -0.27 -1.23 16 27 C -0.17 -1.18 10.23 -26.73 -0.27 -1.46 16 28 N -0.27 -4.08 12.41 33.29 0.41 -3.67 16 29 N -0.05 -0.75 12.14 60.35 0.73 -0.02 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.38 9.66 7.64 -40.82 -0.31 9.35 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.01 0.22 6.40 -51.93 -0.33 -0.11 16 34 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.41 3.82 6.50 -40.82 -0.27 3.55 16 41 H 0.14 0.49 8.07 -51.93 -0.42 0.07 16 42 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.19 0.95 7.46 -52.49 -0.39 0.56 16 44 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 0.46 7.23 -51.93 -0.38 0.08 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 48 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -35.90 394.28 -8.61 -44.51 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.51 Total: 8.04 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.22 Total: -7.47 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 1.11 Total: -59.36 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.90 -8.61 -44.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.860 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds