Wall clock time and date at job start Tue Mar 31 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00524 * 3 2 1 5 5 H 1.48505 * 109.46931 * 30.00249 * 3 2 1 6 6 H 1.48494 * 109.47031 * 150.00276 * 3 2 1 7 7 C 1.38815 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00237 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47351 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.53406 * 307.60591 * 11 10 9 13 13 C 1.54886 * 110.48704 * 70.21553 * 11 10 9 14 14 C 1.54894 * 102.74731 * 156.61963 * 13 11 10 15 15 C 1.54259 * 104.19724 * 322.06427 * 14 13 11 16 16 C 1.53884 * 106.60140 * 23.60476 * 15 14 13 17 17 H 1.09000 * 110.03132 * 119.33200 * 16 15 14 18 18 N 1.46499 * 110.03428 * 240.71862 * 16 15 14 19 19 C 1.34777 * 119.99665 * 273.82208 * 18 16 15 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 16 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 16 22 22 N 1.46509 * 109.47002 * 179.97438 * 21 19 18 23 23 C 1.35309 * 125.86840 * 124.99417 * 22 21 19 24 24 C 1.35348 * 106.17431 * 179.97438 * 23 22 21 25 25 C 1.50702 * 126.75330 * 180.02562 * 24 23 22 26 26 C 1.52999 * 117.49852 * 343.63200 * 25 24 23 27 27 C 1.52994 * 117.49930 * 275.00790 * 25 24 23 28 28 N 1.33773 * 106.49774 * 0.02562 * 24 23 22 29 29 N 1.28635 * 108.88456 * 359.73031 * 28 24 23 30 30 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99706 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47536 * 59.99291 * 10 9 7 33 33 H 1.09006 * 109.46734 * 299.99289 * 10 9 7 34 34 H 1.09002 * 110.75588 * 38.31755 * 13 11 10 35 35 H 1.08993 * 110.91991 * 275.01088 * 13 11 10 36 36 H 1.08990 * 110.48910 * 203.37862 * 14 13 11 37 37 H 1.09001 * 110.59567 * 80.79362 * 14 13 11 38 38 H 1.08998 * 110.03394 * 264.32094 * 15 14 13 39 39 H 1.09001 * 110.03773 * 142.88932 * 15 14 13 40 40 H 0.97001 * 119.99790 * 93.53921 * 18 16 15 41 41 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 42 42 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 43 43 H 1.07999 * 126.91206 * 359.97438 * 23 22 21 44 44 H 1.09001 * 115.55004 * 129.33205 * 25 24 23 45 45 H 1.09005 * 117.49624 * 359.97438 * 26 25 24 46 46 H 1.08994 * 117.50249 * 145.01618 * 26 25 24 47 47 H 1.09009 * 117.49494 * 214.97693 * 27 25 24 48 48 H 1.08992 * 117.50231 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8198 -0.0022 12 1 0.3415 -4.7058 0.8062 13 6 0.3387 -4.9124 -1.3678 14 6 -0.1118 -6.3936 -1.4158 15 6 1.0595 -7.1663 -0.7752 16 6 1.8071 -6.1656 0.1236 17 1 1.7891 -6.5075 1.1585 18 7 3.1916 -6.0188 -0.3321 19 6 4.1383 -6.8739 0.1025 20 8 3.8451 -7.7618 0.8749 21 6 5.5614 -6.7266 -0.3711 22 7 6.3900 -7.7683 0.2409 23 6 7.1685 -8.6540 -0.4229 24 6 7.7524 -9.4258 0.5233 25 6 8.7141 -10.5628 0.2922 26 6 8.7908 -11.1473 -1.1197 27 6 8.1201 -11.9426 0.0022 28 7 7.3080 -8.9808 1.7040 29 7 6.5067 -7.9949 1.5025 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6840 -3.7150 0.8887 33 1 2.6852 -3.7142 -0.8913 34 1 1.0249 -4.6908 -2.1853 35 1 -0.5228 -4.2454 -1.3970 36 1 -0.2615 -6.7136 -2.4469 37 1 -1.0245 -6.5357 -0.8370 38 1 1.7269 -7.5427 -1.5504 39 1 0.6782 -7.9934 -0.1763 40 1 3.4261 -5.3086 -0.9499 41 1 5.5952 -6.8256 -1.4561 42 1 5.9404 -5.7459 -0.0838 43 1 7.2979 -8.7297 -1.4924 44 1 9.6365 -10.5236 0.8718 45 1 8.1454 -10.7097 -1.8813 46 1 9.7637 -11.4926 -1.4693 47 1 8.6519 -12.8112 0.3907 48 1 7.0338 -12.0281 -0.0211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732615006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:53 Heat of formation + Delta-G solvation = 76.377918 kcal Electronic energy + Delta-G solvation = -28217.131371 eV Core-core repulsion = 24309.426956 eV Total energy + Delta-G solvation = -3907.704415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.29023 -41.29664 -39.29766 -38.14278 -36.26440 -35.44243 -34.69121 -33.31406 -31.70002 -30.42645 -30.09160 -28.19047 -26.31217 -25.03694 -24.09274 -23.85265 -23.02768 -21.98296 -21.44533 -21.24453 -20.57582 -19.29098 -18.69474 -18.46711 -17.34633 -16.88839 -16.66394 -16.44309 -16.29877 -16.04305 -15.70443 -15.42778 -15.25880 -15.17714 -15.12099 -14.65093 -14.47064 -13.86783 -13.54641 -13.33327 -13.12818 -12.83909 -12.66793 -12.55687 -12.31043 -12.28369 -12.19062 -12.17416 -11.99077 -11.83132 -11.72989 -11.66241 -11.55986 -11.47821 -11.39570 -11.19037 -10.90090 -10.80669 -10.15832 -9.98674 -8.98021 -7.93997 -5.22150 0.57888 1.23518 1.42052 1.48323 1.49377 1.49727 1.57662 2.11311 2.56330 2.88430 3.26368 3.37827 3.42309 3.57445 3.65001 3.74754 3.86105 3.90736 4.00240 4.02987 4.07265 4.18295 4.28313 4.37304 4.41339 4.48523 4.53914 4.55227 4.68102 4.76806 4.79136 4.83900 4.85811 4.98727 5.01742 5.09374 5.20168 5.21980 5.23523 5.25598 5.31093 5.36616 5.46120 5.48986 5.52315 5.56715 6.27879 6.40454 7.08341 7.35054 7.52257 8.11444 8.33293 9.29412 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002353 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.425403 B =11895.256410 C =13277.609314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.165 3.835 11 C -0.100 4.100 12 H 0.072 0.928 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.121 4.121 16 C 0.157 3.843 17 H 0.067 0.933 18 N -0.701 5.701 19 C 0.500 3.500 20 O -0.566 6.566 21 C 0.091 3.909 22 N -0.278 5.278 23 C -0.031 4.031 24 C -0.010 4.010 25 C -0.092 4.092 26 C -0.141 4.141 27 C -0.175 4.175 28 N -0.311 5.311 29 N -0.105 5.105 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.010 0.990 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.417 0.583 41 H 0.192 0.808 42 H 0.153 0.847 43 H 0.239 0.761 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.229 -21.636 -10.883 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.038 3.962 11 C -0.119 4.119 12 H 0.090 0.910 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.160 4.160 16 C 0.052 3.948 17 H 0.085 0.915 18 N -0.356 5.356 19 C 0.285 3.715 20 O -0.444 6.444 21 C -0.032 4.032 22 N -0.072 5.072 23 C -0.181 4.181 24 C -0.148 4.148 25 C -0.112 4.112 26 C -0.178 4.178 27 C -0.213 4.213 28 N -0.177 5.177 29 N -0.084 5.084 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.257 0.743 41 H 0.209 0.791 42 H 0.170 0.830 43 H 0.255 0.745 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.141 0.859 47 H 0.130 0.870 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.706 -21.688 -8.892 27.153 hybrid contribution -0.133 1.385 -0.533 1.490 sum 13.573 -20.303 -9.425 26.178 Atomic orbital electron populations 1.69808 1.06575 1.25943 1.59602 1.25542 0.96351 1.01055 1.03960 0.85184 0.77639 0.79718 0.77474 1.21135 1.22730 1.19596 1.19618 0.91550 0.85226 1.40842 0.90358 1.42548 1.05665 1.01043 1.89236 1.20734 0.93536 0.84282 0.97613 1.22336 0.97399 0.92747 0.99425 0.90954 1.22442 0.99806 0.96635 0.95697 1.22327 0.97571 0.93818 1.01546 1.22482 0.97481 0.97337 0.98707 1.21451 0.80270 0.94751 0.98358 0.91484 1.46028 1.07985 1.33026 1.48544 1.20774 0.87853 0.81859 0.80982 1.90818 1.82581 1.35133 1.35856 1.22344 0.86253 0.91771 1.02857 1.47001 1.30334 1.24473 1.05359 1.23979 0.97984 0.93629 1.02508 1.21606 1.03062 1.01294 0.88868 1.20083 0.97874 0.90434 1.02853 1.23166 1.03733 1.01061 0.89824 1.23042 1.00330 0.94001 1.03905 1.75008 1.09629 1.06926 1.26122 1.78416 1.16532 1.14410 0.99030 0.94139 0.79430 0.97200 0.94257 0.90800 0.92703 0.89881 0.91445 0.90428 0.91620 0.74345 0.79066 0.82997 0.74524 0.86196 0.87131 0.85894 0.87020 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.24 -12.71 9.99 84.03 0.84 -11.87 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -35.13 5.49 -343.45 -1.89 -37.02 16 10 C 0.16 5.74 4.72 86.38 0.41 6.14 16 11 C -0.10 -2.85 2.85 -9.72 -0.03 -2.88 16 12 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 13 C -0.11 -2.76 6.19 31.89 0.20 -2.56 16 14 C -0.11 -2.29 6.83 31.67 0.22 -2.08 16 15 C -0.12 -2.51 6.58 31.32 0.21 -2.30 16 16 C 0.16 3.87 3.09 45.72 0.14 4.01 16 17 H 0.07 1.99 7.61 -2.39 -0.02 1.97 16 18 N -0.70 -14.07 4.38 -439.10 -1.92 -15.99 16 19 C 0.50 11.14 7.83 87.66 0.69 11.82 16 20 O -0.57 -18.86 15.37 -3.04 -0.05 -18.91 16 21 C 0.09 1.20 6.94 85.63 0.59 1.79 16 22 N -0.28 -5.94 3.19 -351.46 -1.12 -7.06 16 23 C -0.03 -0.49 10.89 83.49 0.91 0.42 16 24 C -0.01 -0.22 6.88 41.60 0.29 0.06 16 25 C -0.09 -1.43 6.33 -11.54 -0.07 -1.50 16 26 C -0.14 -1.11 10.02 30.59 0.31 -0.81 16 27 C -0.18 -2.27 10.23 30.59 0.31 -1.96 16 28 N -0.31 -9.87 12.41 -48.60 -0.60 -10.47 16 29 N -0.11 -3.35 12.14 37.02 0.45 -2.91 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.37 19.15 7.64 -92.71 -0.71 18.44 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.04 1.20 6.40 -2.38 -0.02 1.18 16 34 H 0.07 1.79 7.97 -2.39 -0.02 1.77 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.42 6.54 6.50 -92.71 -0.60 5.94 16 41 H 0.19 0.27 8.07 -2.39 -0.02 0.25 16 42 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.24 1.07 7.46 -2.91 -0.02 1.05 16 44 H 0.12 1.79 8.14 -2.39 -0.02 1.78 16 45 H 0.11 0.55 7.23 -2.38 -0.02 0.53 16 46 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -82.92 394.28 2.32 -80.59 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.33 Total: 28.00 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.47 Total: -5.51 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -4.80 Total: -130.96 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -82.92 2.32 -80.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.972 kcal (2) G-P(sol) polarization free energy of solvation -82.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds