Wall clock time and date at job start Tue Mar 31 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47054 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.46955 * 60.00031 * 3 2 1 7 7 C 1.38811 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99497 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.05499 * 305.04008 * 11 10 9 13 13 C 1.53876 * 110.03160 * 66.45670 * 11 10 9 14 14 C 1.54261 * 106.59990 * 119.28578 * 13 11 10 15 15 C 1.54888 * 104.19672 * 23.60631 * 14 13 11 16 16 C 1.54267 * 110.03137 * 183.62253 * 11 10 9 17 17 H 1.09004 * 110.48597 * 335.78345 * 16 11 10 18 18 N 1.46497 * 110.48629 * 98.42734 * 16 11 10 19 19 C 1.34779 * 119.99952 * 204.99810 * 18 16 11 20 20 O 1.21286 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00107 * 180.02562 * 19 18 16 22 22 N 1.46496 * 109.47179 * 179.97438 * 21 19 18 23 23 C 1.35315 * 125.86516 * 124.99954 * 22 21 19 24 24 C 1.35349 * 106.17356 * 180.02562 * 23 22 21 25 25 C 1.50701 * 126.74960 * 179.97438 * 24 23 22 26 26 C 1.53002 * 117.50105 * 343.62254 * 25 24 23 27 27 C 1.52998 * 117.50203 * 274.99902 * 25 24 23 28 28 N 1.33766 * 106.49766 * 0.02562 * 24 23 22 29 29 N 1.28638 * 108.88682 * 359.73448 * 28 24 23 30 30 H 0.97000 * 120.00221 * 0.02562 * 1 2 3 31 31 H 0.96992 * 119.99989 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47057 * 60.00145 * 10 9 7 33 33 H 1.09001 * 109.47562 * 300.00590 * 10 9 7 34 34 H 1.08998 * 110.02768 * 238.57174 * 13 11 10 35 35 H 1.08994 * 110.03051 * 359.97438 * 13 11 10 36 36 H 1.09000 * 110.48928 * 142.28640 * 14 13 11 37 37 H 1.09001 * 110.48691 * 264.79667 * 14 13 11 38 38 H 1.09005 * 110.75648 * 80.37263 * 15 14 13 39 39 H 1.09004 * 110.75897 * 203.55715 * 15 14 13 40 40 H 0.96995 * 120.00065 * 25.00233 * 18 16 11 41 41 H 1.08995 * 109.47115 * 300.00368 * 21 19 18 42 42 H 1.09000 * 109.46780 * 60.00164 * 21 19 18 43 43 H 1.08007 * 126.91324 * 359.97438 * 23 22 21 44 44 H 1.09003 * 115.54890 * 129.33209 * 25 24 23 45 45 H 1.09001 * 117.49415 * 359.97438 * 26 25 24 46 46 H 1.08998 * 117.50272 * 145.02190 * 26 25 24 47 47 H 1.08996 * 117.50159 * 214.98407 * 27 25 24 48 48 H 1.09002 * 117.49670 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3739 -4.7220 0.8369 13 6 0.2831 -4.8448 -1.3268 14 6 0.5917 -6.2007 -1.9945 15 6 1.0078 -7.1177 -0.8176 16 6 1.8201 -6.1613 0.0904 17 1 2.8378 -6.0520 -0.2844 18 7 1.8306 -6.6507 1.4712 19 6 2.8072 -7.4829 1.8837 20 8 3.6771 -7.8269 1.1117 21 6 2.8177 -7.9868 3.3040 22 7 3.9709 -8.8686 3.5007 23 6 4.9223 -8.7292 4.4528 24 6 5.7895 -9.7524 4.2718 25 6 7.0272 -10.0394 5.0824 26 6 7.5709 -8.9136 5.9644 27 6 8.3144 -9.3125 4.6880 28 7 5.3327 -10.4581 3.2314 29 7 4.2510 -9.9115 2.8003 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8895 33 1 2.6849 -3.7145 -0.8905 34 1 -0.7859 -4.7593 -1.1320 35 1 0.6121 -4.0283 -1.9694 36 1 -0.2968 -6.5937 -2.4887 37 1 1.4095 -6.0974 -2.7078 38 1 0.1300 -7.4956 -0.2933 39 1 1.6292 -7.9409 -1.1703 40 1 1.1347 -6.3759 2.0884 41 1 2.8851 -7.1416 3.9889 42 1 1.8996 -8.5407 3.4997 43 1 4.9787 -7.9563 5.2051 44 1 7.1193 -11.0598 5.4545 45 1 7.0337 -7.9652 5.9579 46 1 8.0208 -9.1931 6.9170 47 1 9.2533 -9.8545 4.8009 48 1 8.2661 -8.6269 3.8419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732615011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:57 Heat of formation + Delta-G solvation = 95.613878 kcal Electronic energy + Delta-G solvation = -27992.693085 eV Core-core repulsion = 24085.822804 eV Total energy + Delta-G solvation = -3906.870281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.48236 -40.18420 -38.22516 -37.55888 -34.67977 -34.56333 -33.76572 -31.44400 -30.93243 -29.53058 -28.59572 -27.19036 -24.55774 -24.35141 -23.12132 -22.47805 -22.08690 -21.17645 -20.59783 -20.54875 -19.47654 -17.89127 -17.77398 -17.05853 -16.60104 -16.23796 -15.69727 -15.45439 -15.03676 -14.81208 -14.69721 -14.63668 -14.30778 -13.67077 -13.57612 -13.16049 -13.10713 -12.83469 -12.65821 -12.26482 -11.96855 -11.89354 -11.73893 -11.42837 -11.38378 -11.05862 -10.97621 -10.90320 -10.82904 -10.68415 -10.58773 -10.56851 -10.50361 -10.18248 -10.02214 -9.90633 -9.77013 -9.23943 -9.14347 -8.93284 -6.97947 -5.82364 -3.10982 1.33572 1.89743 2.25495 2.32595 2.90015 3.39110 3.44361 3.45527 3.47338 3.90185 4.18167 4.27715 4.44029 4.49159 4.50399 4.53807 4.61018 4.68916 4.75125 4.89301 5.01197 5.05473 5.29039 5.41643 5.47683 5.47981 5.52606 5.53837 5.56959 5.64472 5.75048 5.76719 5.82387 5.85529 5.92122 6.02469 6.09056 6.15087 6.24085 6.24304 6.38938 6.45693 6.58689 6.70919 6.82883 7.22082 7.65793 7.90845 8.36650 8.36724 9.48246 10.05147 10.40282 11.40457 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002393 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.394101 B =11696.242282 C =13544.221744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.148 3.852 17 H 0.098 0.902 18 N -0.712 5.712 19 C 0.501 3.499 20 O -0.510 6.510 21 C 0.095 3.905 22 N -0.280 5.280 23 C -0.047 4.047 24 C 0.009 3.991 25 C -0.072 4.072 26 C -0.170 4.170 27 C -0.165 4.165 28 N -0.265 5.265 29 N -0.051 5.051 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.016 0.984 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.402 0.598 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.190 0.810 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -19.453 11.396 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.095 0.905 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.171 4.171 16 C 0.043 3.957 17 H 0.116 0.884 18 N -0.364 5.364 19 C 0.284 3.716 20 O -0.383 6.383 21 C -0.031 4.031 22 N -0.074 5.074 23 C -0.197 4.197 24 C -0.128 4.128 25 C -0.092 4.092 26 C -0.208 4.208 27 C -0.203 4.203 28 N -0.132 5.132 29 N -0.031 5.031 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.207 0.793 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.634 -20.450 9.625 23.293 hybrid contribution -0.129 2.034 1.234 2.383 sum 5.505 -18.416 10.859 22.076 Atomic orbital electron populations 1.69664 1.05085 1.25560 1.57901 1.24733 0.95533 0.97686 1.03021 0.86128 0.78831 0.84102 0.77218 1.20558 1.21816 1.21863 1.19268 0.91052 0.84160 1.42521 0.91231 1.42345 1.05831 0.99863 1.89480 1.20727 0.92901 0.85265 0.97822 1.22192 0.97699 0.93361 0.98864 0.90509 1.22131 0.99833 0.97444 0.95894 1.22317 1.01137 0.95394 0.97195 1.22849 0.99618 0.97926 0.96680 1.21997 1.01142 0.92950 0.79606 0.88410 1.45945 1.28331 1.48074 1.14004 1.20160 0.82714 0.79909 0.88850 1.90844 1.36624 1.56040 1.54835 1.21916 0.88048 0.94893 0.98239 1.46699 1.19395 1.19841 1.21427 1.23259 0.92754 1.04748 0.98959 1.20979 0.98672 0.95393 0.97785 1.19987 0.89970 0.98248 1.00980 1.23024 1.03681 0.98690 0.95377 1.23012 0.95152 1.03229 0.98879 1.75076 1.04277 1.24077 1.09785 1.78445 1.11480 0.97041 1.16126 0.93559 0.78227 0.96653 0.96109 0.91768 0.90139 0.91656 0.91496 0.91336 0.91340 0.76263 0.84522 0.85230 0.79344 0.86078 0.88552 0.87934 0.88056 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -17.72 5.34 -59.91 -0.32 -18.04 16 10 C 0.16 3.08 5.29 -4.04 -0.02 3.06 16 11 C -0.10 -1.47 2.71 -89.50 -0.24 -1.71 16 12 H 0.08 1.06 7.73 -51.93 -0.40 0.66 16 13 C -0.12 -1.64 6.13 -25.61 -0.16 -1.80 16 14 C -0.12 -1.46 6.83 -25.08 -0.17 -1.63 16 15 C -0.13 -1.53 6.58 -24.74 -0.16 -1.69 16 16 C 0.15 1.87 2.75 -66.27 -0.18 1.69 16 17 H 0.10 1.48 7.27 -51.93 -0.38 1.11 16 18 N -0.71 -7.14 5.16 -52.20 -0.27 -7.41 16 19 C 0.50 5.68 7.84 -10.98 -0.09 5.60 16 20 O -0.51 -8.41 15.33 5.55 0.09 -8.33 16 21 C 0.09 0.69 6.94 -5.20 -0.04 0.65 16 22 N -0.28 -3.09 3.19 -62.44 -0.20 -3.29 16 23 C -0.05 -0.45 10.89 -17.05 -0.19 -0.63 16 24 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 25 C -0.07 -0.60 6.33 -91.77 -0.58 -1.18 16 26 C -0.17 -1.03 10.02 -26.73 -0.27 -1.29 16 27 C -0.17 -1.25 10.23 -26.73 -0.27 -1.53 16 28 N -0.27 -3.95 12.41 33.29 0.41 -3.53 16 29 N -0.05 -0.76 12.14 60.35 0.73 -0.03 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.38 9.70 7.50 -40.82 -0.31 9.39 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.40 2.83 8.37 -40.82 -0.34 2.48 16 41 H 0.14 0.47 8.07 -51.93 -0.42 0.06 16 42 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.19 1.01 7.46 -52.48 -0.39 0.62 16 44 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.10 0.52 7.23 -51.93 -0.38 0.15 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -36.72 397.47 -8.68 -45.40 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.63 Total: 7.14 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.18 Total: -8.14 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 1.08 Total: -59.14 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.72 -8.68 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.013 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds