Wall clock time and date at job start Tue Mar 31 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47054 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.46955 * 60.00031 * 3 2 1 7 7 C 1.38811 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99497 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.05499 * 305.04008 * 11 10 9 13 13 C 1.53876 * 110.03160 * 66.45670 * 11 10 9 14 14 C 1.54261 * 106.59990 * 119.28578 * 13 11 10 15 15 C 1.54888 * 104.19672 * 23.60631 * 14 13 11 16 16 C 1.54267 * 110.03137 * 183.62253 * 11 10 9 17 17 H 1.09004 * 110.48597 * 335.78345 * 16 11 10 18 18 N 1.46497 * 110.48629 * 98.42734 * 16 11 10 19 19 C 1.34779 * 119.99952 * 204.99810 * 18 16 11 20 20 O 1.21286 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00107 * 180.02562 * 19 18 16 22 22 N 1.46496 * 109.47179 * 179.97438 * 21 19 18 23 23 C 1.35315 * 125.86516 * 124.99954 * 22 21 19 24 24 C 1.35349 * 106.17356 * 180.02562 * 23 22 21 25 25 C 1.50701 * 126.74960 * 179.97438 * 24 23 22 26 26 C 1.53002 * 117.50105 * 343.62254 * 25 24 23 27 27 C 1.52998 * 117.50203 * 274.99902 * 25 24 23 28 28 N 1.33766 * 106.49766 * 0.02562 * 24 23 22 29 29 N 1.28638 * 108.88682 * 359.73448 * 28 24 23 30 30 H 0.97000 * 120.00221 * 0.02562 * 1 2 3 31 31 H 0.96992 * 119.99989 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47057 * 60.00145 * 10 9 7 33 33 H 1.09001 * 109.47562 * 300.00590 * 10 9 7 34 34 H 1.08998 * 110.02768 * 238.57174 * 13 11 10 35 35 H 1.08994 * 110.03051 * 359.97438 * 13 11 10 36 36 H 1.09000 * 110.48928 * 142.28640 * 14 13 11 37 37 H 1.09001 * 110.48691 * 264.79667 * 14 13 11 38 38 H 1.09005 * 110.75648 * 80.37263 * 15 14 13 39 39 H 1.09004 * 110.75897 * 203.55715 * 15 14 13 40 40 H 0.96995 * 120.00065 * 25.00233 * 18 16 11 41 41 H 1.08995 * 109.47115 * 300.00368 * 21 19 18 42 42 H 1.09000 * 109.46780 * 60.00164 * 21 19 18 43 43 H 1.08007 * 126.91324 * 359.97438 * 23 22 21 44 44 H 1.09003 * 115.54890 * 129.33209 * 25 24 23 45 45 H 1.09001 * 117.49415 * 359.97438 * 26 25 24 46 46 H 1.08998 * 117.50272 * 145.02190 * 26 25 24 47 47 H 1.08996 * 117.50159 * 214.98407 * 27 25 24 48 48 H 1.09002 * 117.49670 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3739 -4.7220 0.8369 13 6 0.2831 -4.8448 -1.3268 14 6 0.5917 -6.2007 -1.9945 15 6 1.0078 -7.1177 -0.8176 16 6 1.8201 -6.1613 0.0904 17 1 2.8378 -6.0520 -0.2844 18 7 1.8306 -6.6507 1.4712 19 6 2.8072 -7.4829 1.8837 20 8 3.6771 -7.8269 1.1117 21 6 2.8177 -7.9868 3.3040 22 7 3.9709 -8.8686 3.5007 23 6 4.9223 -8.7292 4.4528 24 6 5.7895 -9.7524 4.2718 25 6 7.0272 -10.0394 5.0824 26 6 7.5709 -8.9136 5.9644 27 6 8.3144 -9.3125 4.6880 28 7 5.3327 -10.4581 3.2314 29 7 4.2510 -9.9115 2.8003 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8895 33 1 2.6849 -3.7145 -0.8905 34 1 -0.7859 -4.7593 -1.1320 35 1 0.6121 -4.0283 -1.9694 36 1 -0.2968 -6.5937 -2.4887 37 1 1.4095 -6.0974 -2.7078 38 1 0.1300 -7.4956 -0.2933 39 1 1.6292 -7.9409 -1.1703 40 1 1.1347 -6.3759 2.0884 41 1 2.8851 -7.1416 3.9889 42 1 1.8996 -8.5407 3.4997 43 1 4.9787 -7.9563 5.2051 44 1 7.1193 -11.0598 5.4545 45 1 7.0337 -7.9652 5.9579 46 1 8.0208 -9.1931 6.9170 47 1 9.2533 -9.8545 4.8009 48 1 8.2661 -8.6269 3.8419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732615011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:56 Heat of formation + Delta-G solvation = 69.501898 kcal Electronic energy + Delta-G solvation = -27993.825385 eV Core-core repulsion = 24085.822804 eV Total energy + Delta-G solvation = -3908.002581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.29296 -41.16337 -39.33981 -38.15769 -36.33713 -35.44850 -34.85750 -33.29512 -31.70713 -30.42915 -30.08801 -28.16114 -26.30544 -25.05014 -24.19631 -23.66939 -22.95573 -21.98196 -21.62890 -21.35933 -20.62208 -19.31343 -18.61546 -18.41299 -17.52125 -17.10347 -16.63511 -16.38157 -16.29187 -16.10621 -15.68355 -15.36205 -15.31153 -15.16681 -14.99523 -14.67261 -14.29258 -13.79582 -13.54019 -13.32005 -13.15511 -13.12722 -12.84336 -12.56910 -12.40744 -12.31053 -12.18615 -12.12615 -11.97559 -11.90491 -11.78245 -11.72121 -11.66006 -11.42369 -11.30707 -11.20194 -10.96304 -10.80466 -10.13156 -9.99342 -9.01402 -7.97354 -5.25519 0.56035 1.24475 1.41707 1.45961 1.47059 1.48215 1.56617 2.08693 2.53953 2.86843 3.25834 3.36065 3.42351 3.54792 3.64157 3.75910 3.86841 3.90536 3.99463 4.02230 4.06107 4.18961 4.26730 4.37756 4.40375 4.45422 4.49386 4.50966 4.65867 4.70740 4.77434 4.84312 4.94668 4.97499 5.00797 5.10732 5.13256 5.18883 5.22578 5.24702 5.29529 5.34124 5.42937 5.47643 5.52090 5.58712 6.25476 6.41955 7.10667 7.32756 7.50972 8.07121 8.32741 9.25813 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002393 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.394101 B =11696.242282 C =13544.221744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.088 4.088 12 H 0.091 0.909 13 C -0.113 4.113 14 C -0.116 4.116 15 C -0.122 4.122 16 C 0.155 3.845 17 H 0.068 0.932 18 N -0.699 5.699 19 C 0.499 3.501 20 O -0.569 6.569 21 C 0.094 3.906 22 N -0.279 5.279 23 C -0.034 4.034 24 C -0.010 4.010 25 C -0.089 4.089 26 C -0.143 4.143 27 C -0.177 4.177 28 N -0.310 5.310 29 N -0.099 5.099 30 H 0.252 0.748 31 H 0.378 0.622 32 H 0.014 0.986 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.421 0.579 41 H 0.185 0.815 42 H 0.166 0.834 43 H 0.234 0.766 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.113 0.887 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -19.267 13.841 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.109 0.891 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.160 4.160 16 C 0.049 3.951 17 H 0.087 0.913 18 N -0.352 5.352 19 C 0.284 3.716 20 O -0.446 6.446 21 C -0.030 4.030 22 N -0.073 5.073 23 C -0.184 4.184 24 C -0.148 4.148 25 C -0.109 4.109 26 C -0.180 4.180 27 C -0.215 4.215 28 N -0.176 5.176 29 N -0.078 5.078 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.032 0.968 33 H 0.025 0.975 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.259 0.741 41 H 0.202 0.798 42 H 0.183 0.817 43 H 0.250 0.750 44 H 0.141 0.859 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.131 0.869 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.198 -20.287 12.079 24.176 hybrid contribution 0.043 1.989 0.468 2.044 sum 5.241 -18.299 12.546 22.797 Atomic orbital electron populations 1.69795 1.06358 1.26045 1.59320 1.25488 0.96404 1.00802 1.03595 0.85140 0.78108 0.80083 0.76825 1.19522 1.22063 1.21658 1.19590 0.91261 0.85552 1.41402 0.91373 1.42476 1.05663 1.00739 1.89259 1.20813 0.93658 0.85178 0.96828 1.22027 0.96813 0.92208 0.99676 0.89073 1.22073 1.00170 0.97613 0.95304 1.22279 1.01774 0.94139 0.97201 1.22770 0.99921 0.97100 0.96220 1.21673 0.99452 0.92439 0.81487 0.91335 1.45773 1.28681 1.47483 1.13234 1.20862 0.81573 0.78982 0.90202 1.90835 1.38852 1.58102 1.56851 1.22352 0.88405 0.96316 0.95908 1.47004 1.20171 1.19175 1.20925 1.23955 0.91162 1.04613 0.98691 1.21568 0.99978 0.95840 0.97376 1.20090 0.89290 0.99396 1.02114 1.23161 1.01738 0.97909 0.95218 1.23040 0.95525 1.03343 0.99590 1.74994 1.05166 1.25888 1.11543 1.78357 1.12376 0.99081 1.17962 0.93895 0.78973 0.96793 0.97492 0.90802 0.93380 0.89639 0.92287 0.89176 0.92148 0.74058 0.79798 0.81708 0.74958 0.85851 0.87455 0.85782 0.86906 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.21 13.06 21.65 0.28 -56.93 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.74 -36.03 5.34 -343.45 -1.83 -37.86 16 10 C 0.16 6.25 5.29 86.38 0.46 6.71 16 11 C -0.09 -2.46 2.71 -10.07 -0.03 -2.49 16 12 H 0.09 2.32 7.73 -2.39 -0.02 2.31 16 13 C -0.11 -3.17 6.13 31.32 0.19 -2.98 16 14 C -0.12 -2.65 6.83 31.67 0.22 -2.43 16 15 C -0.12 -2.63 6.58 31.89 0.21 -2.42 16 16 C 0.16 3.81 2.75 46.07 0.13 3.94 16 17 H 0.07 2.13 7.27 -2.38 -0.02 2.12 16 18 N -0.70 -12.53 5.16 -437.44 -2.26 -14.79 16 19 C 0.50 10.53 7.84 87.66 0.69 11.22 16 20 O -0.57 -19.01 15.33 -3.05 -0.05 -19.06 16 21 C 0.09 1.05 6.94 85.63 0.59 1.64 16 22 N -0.28 -5.68 3.19 -351.47 -1.12 -6.81 16 23 C -0.03 -0.56 10.89 83.49 0.91 0.35 16 24 C -0.01 -0.21 6.88 41.60 0.29 0.07 16 25 C -0.09 -1.41 6.33 -11.54 -0.07 -1.49 16 26 C -0.14 -1.34 10.02 30.59 0.31 -1.03 16 27 C -0.18 -2.56 10.23 30.59 0.31 -2.24 16 28 N -0.31 -9.52 12.41 -48.60 -0.60 -10.13 16 29 N -0.10 -2.97 12.14 37.02 0.45 -2.52 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.38 19.21 7.50 -92.71 -0.70 18.51 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.42 4.44 8.37 -92.71 -0.78 3.66 16 41 H 0.18 0.29 8.07 -2.39 -0.02 0.27 16 42 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.23 1.42 7.46 -2.91 -0.02 1.40 16 44 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 0.77 7.23 -2.39 -0.02 0.75 16 46 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -84.50 397.47 1.91 -82.59 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.49 Total: 25.43 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.50 Total: -7.36 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -5.08 Total: -129.03 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -84.50 1.91 -82.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.095 kcal (2) G-P(sol) polarization free energy of solvation -84.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds