Wall clock time and date at job start Tue Mar 31 2020 18:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 17 17 H 1.09001 * 110.03351 * 238.62128 * 16 11 10 18 18 N 1.46505 * 110.03121 * 359.97438 * 16 11 10 19 19 C 1.34767 * 119.99969 * 204.99734 * 18 16 11 20 20 O 1.21283 * 120.00467 * 0.02562 * 19 18 16 21 21 C 1.50706 * 120.00097 * 180.02562 * 19 18 16 22 22 N 1.46497 * 109.47442 * 180.02562 * 21 19 18 23 23 C 1.35315 * 125.86970 * 124.99702 * 22 21 19 24 24 C 1.35351 * 106.17619 * 180.02562 * 23 22 21 25 25 C 1.50694 * 126.75174 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.49774 * 343.61735 * 25 24 23 27 27 C 1.52998 * 60.00309 * 252.51535 * 26 25 24 28 28 N 1.33770 * 106.49581 * 0.02562 * 24 23 22 29 29 N 1.28644 * 108.88744 * 359.73655 * 28 24 23 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 35 35 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 36 36 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 37 37 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 38 38 H 1.09003 * 110.48811 * 203.38045 * 15 14 13 39 39 H 1.08998 * 110.48342 * 80.73709 * 15 14 13 40 40 H 0.96999 * 119.99773 * 25.00497 * 18 16 11 41 41 H 1.09011 * 109.46791 * 300.00227 * 21 19 18 42 42 H 1.09001 * 109.47141 * 60.00042 * 21 19 18 43 43 H 1.07996 * 126.91146 * 359.97438 * 23 22 21 44 44 H 1.08994 * 115.55333 * 129.33185 * 25 24 23 45 45 H 1.08995 * 117.49991 * 0.02562 * 26 25 24 46 46 H 1.09000 * 117.49603 * 145.02252 * 26 25 24 47 47 H 1.09002 * 117.49869 * 252.51514 * 27 26 25 48 48 H 1.09000 * 117.49915 * 107.48982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 6 1.8158 -6.1562 -0.1283 17 1 1.4769 -6.6933 -1.0142 18 7 3.2584 -5.9144 -0.2105 19 6 4.0598 -6.8168 -0.8103 20 8 3.5868 -7.8289 -1.2824 21 6 5.5439 -6.5684 -0.8944 22 7 6.1878 -7.6870 -1.5874 23 6 6.9806 -7.5921 -2.6799 24 6 7.3555 -8.8565 -2.9847 25 6 8.2443 -9.2835 -4.1242 26 6 8.4774 -8.2779 -5.2534 27 6 7.5878 -9.5002 -5.4892 28 7 6.7808 -9.6525 -2.0760 29 7 6.1000 -8.9285 -1.2592 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 0.8880 -4.3869 2.1254 35 1 -0.6711 -4.3893 1.2427 36 1 -0.6918 -6.7941 1.0645 37 1 0.0073 -6.5568 2.6985 38 1 1.3751 -8.0253 0.8998 39 1 2.2620 -6.8283 1.8950 40 1 3.6368 -5.1049 0.1668 41 1 5.7272 -5.6460 -1.4455 42 1 5.9548 -6.4786 0.1112 43 1 7.2577 -6.6893 -3.2038 44 1 9.0725 -9.9387 -3.8544 45 1 7.9882 -7.3073 -5.1719 46 1 9.4593 -8.2712 -5.7266 47 1 7.9845 -10.2977 -6.1175 48 1 6.5131 -9.3338 -5.5629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732615017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:04 Heat of formation + Delta-G solvation = 103.883473 kcal Electronic energy + Delta-G solvation = -28285.053719 eV Core-core repulsion = 24378.542034 eV Total energy + Delta-G solvation = -3906.511684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.46407 -40.33302 -38.31785 -37.55648 -34.81625 -34.59076 -33.86426 -31.56892 -30.91720 -29.52082 -28.47968 -27.17095 -24.41308 -24.33992 -23.11358 -22.80530 -22.33819 -21.17463 -20.67849 -20.41362 -19.28630 -18.04189 -17.79891 -17.25325 -16.55983 -16.00348 -15.75815 -15.48290 -15.28444 -14.93839 -14.71758 -14.55878 -14.31704 -13.96995 -13.72195 -13.51603 -13.11209 -13.06946 -12.64279 -12.36698 -11.90934 -11.85687 -11.72437 -11.41977 -11.37984 -11.05044 -10.98068 -10.86383 -10.69256 -10.66765 -10.59396 -10.57648 -10.50709 -10.40050 -10.10000 -9.90325 -9.28733 -9.22646 -9.19474 -8.97823 -7.12934 -6.21059 -3.21966 1.35811 1.91834 2.27415 2.33731 2.94165 3.43375 3.44851 3.47984 3.62085 3.92157 4.20083 4.30211 4.49210 4.51403 4.52700 4.54615 4.61326 4.63141 4.66064 4.90142 4.93637 5.06835 5.28092 5.29155 5.42495 5.44975 5.48714 5.51835 5.54173 5.58045 5.69382 5.74148 5.75303 5.82290 5.90191 5.93396 5.95306 5.97252 6.11509 6.24180 6.25613 6.37470 6.40771 6.48523 6.60235 7.24666 7.67225 7.92308 8.38293 8.65051 9.11058 9.97440 10.11973 11.27328 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.002558 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.428779 B =10944.434409 C =12853.087610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.164 3.836 11 C -0.110 4.110 12 H 0.082 0.918 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.152 3.848 17 H 0.090 0.910 18 N -0.714 5.714 19 C 0.501 3.499 20 O -0.514 6.514 21 C 0.093 3.907 22 N -0.279 5.279 23 C -0.047 4.047 24 C 0.008 3.992 25 C -0.071 4.071 26 C -0.170 4.170 27 C -0.165 4.165 28 N -0.266 5.266 29 N -0.052 5.052 30 H 0.256 0.744 31 H 0.368 0.632 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.409 0.591 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.190 0.810 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.737 -15.057 -4.099 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.913 3.087 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.467 4.467 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.036 3.964 11 C -0.129 4.129 12 H 0.100 0.900 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.047 3.953 17 H 0.108 0.892 18 N -0.369 5.369 19 C 0.284 3.716 20 O -0.389 6.389 21 C -0.032 4.032 22 N -0.072 5.072 23 C -0.197 4.197 24 C -0.129 4.129 25 C -0.091 4.091 26 C -0.208 4.208 27 C -0.203 4.203 28 N -0.133 5.133 29 N -0.031 5.031 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.207 0.793 44 H 0.139 0.861 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.849 -15.107 -3.433 20.128 hybrid contribution 0.454 -0.237 -0.459 0.688 sum 13.304 -15.345 -3.892 20.679 Atomic orbital electron populations 1.70856 1.06072 1.28519 1.53177 1.25792 0.97051 1.01056 1.00224 0.83202 0.73864 0.75335 0.76287 1.22247 1.22160 1.21318 1.20011 0.91940 0.85778 1.48994 0.91794 1.42325 1.04933 1.00670 1.90587 1.20608 0.93289 0.85231 0.97309 1.22255 0.98037 0.93507 0.99103 0.90002 1.22363 1.00642 0.95387 0.96587 1.22484 0.96823 0.96017 1.00888 1.22761 0.97892 0.99521 0.96857 1.21686 0.78371 0.96105 0.99129 0.89166 1.46269 1.08264 1.23605 1.58738 1.20177 0.87834 0.84312 0.79323 1.90821 1.75560 1.26398 1.46110 1.21934 0.92461 0.87602 1.01217 1.46702 1.32384 1.07543 1.20619 1.23268 1.01156 1.01559 0.93722 1.20975 1.02956 0.89621 0.99362 1.19981 0.99540 1.03829 0.85772 1.23024 1.01757 0.94762 1.01229 1.23009 0.99606 1.00110 0.97570 1.75075 1.08736 1.26179 1.03286 1.78447 1.17300 0.86741 1.20633 0.93297 0.79853 0.96185 0.96392 0.90934 0.91323 0.91488 0.91429 0.91264 0.91177 0.75236 0.84448 0.85122 0.79340 0.86072 0.88548 0.87923 0.88067 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.15 13.70 55.49 0.76 -27.39 16 2 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 3 Si 1.08 24.84 29.92 -169.99 -5.09 19.75 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.34 -8.94 9.99 -15.06 -0.15 -9.09 16 8 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 9 N -0.74 -17.24 5.45 -59.91 -0.33 -17.57 16 10 C 0.16 2.87 4.19 -4.05 -0.02 2.85 16 11 C -0.11 -1.59 2.96 -89.50 -0.26 -1.86 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.11 -1.55 6.08 -25.07 -0.15 -1.70 16 14 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 15 C -0.13 -1.56 6.53 -25.08 -0.16 -1.73 16 16 C 0.15 1.96 3.23 -66.81 -0.22 1.74 16 17 H 0.09 1.28 7.56 -51.93 -0.39 0.89 16 18 N -0.71 -8.17 4.39 -52.72 -0.23 -8.40 16 19 C 0.50 6.11 7.84 -10.99 -0.09 6.02 16 20 O -0.51 -8.59 15.34 5.56 0.09 -8.50 16 21 C 0.09 0.79 6.94 -5.19 -0.04 0.75 16 22 N -0.28 -3.27 3.19 -62.44 -0.20 -3.47 16 23 C -0.05 -0.47 10.89 -17.04 -0.19 -0.66 16 24 C 0.01 0.09 6.88 -82.78 -0.57 -0.48 16 25 C -0.07 -0.61 6.33 -91.77 -0.58 -1.19 16 26 C -0.17 -1.06 10.02 -26.73 -0.27 -1.33 16 27 C -0.17 -1.26 10.23 -26.73 -0.27 -1.53 16 28 N -0.27 -4.04 12.41 33.29 0.41 -3.62 16 29 N -0.05 -0.79 12.14 60.35 0.73 -0.06 16 30 H 0.26 7.51 6.77 -40.82 -0.28 7.24 16 31 H 0.37 8.91 6.38 -40.82 -0.26 8.65 16 32 H 0.02 0.36 7.42 -51.93 -0.39 -0.03 16 33 H 0.02 0.31 7.10 -51.93 -0.37 -0.06 16 34 H 0.07 1.09 7.76 -51.93 -0.40 0.68 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.41 4.17 5.90 -40.82 -0.24 3.93 16 41 H 0.14 0.68 8.07 -51.92 -0.42 0.26 16 42 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.19 1.13 7.45 -52.49 -0.39 0.74 16 44 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.55 7.23 -51.93 -0.38 0.17 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -36.26 391.33 -8.55 -44.81 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.37 Total: 9.66 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.23 Total: -11.10 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 1.15 Total: -60.51 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.26 -8.55 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732615017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.692 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds