Wall clock time and date at job start Tue Mar 31 2020 18:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47601 * 270.00361 * 3 2 1 5 5 H 1.48503 * 109.47126 * 30.00686 * 3 2 1 6 6 H 1.48506 * 109.47143 * 150.00164 * 3 2 1 7 7 C 1.38815 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99717 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.47166 * 125.64877 * 0.02562 * 9 7 2 11 11 C 1.55346 * 106.96440 * 180.93025 * 10 9 7 12 12 H 1.08998 * 112.91004 * 214.96811 * 11 10 9 13 13 C 1.53005 * 106.41348 * 91.60649 * 11 10 9 14 14 C 1.52590 * 111.09147 * 197.23056 * 13 11 10 15 15 C 1.53333 * 108.40995 * 62.28597 * 14 13 11 16 16 H 1.09001 * 109.74019 * 55.60863 * 15 14 13 17 17 N 1.46496 * 109.73868 * 176.27097 * 15 14 13 18 18 C 1.34776 * 119.99846 * 274.34311 * 17 15 14 19 19 O 1.21282 * 119.99940 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00035 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.47184 * 179.97438 * 20 18 17 22 22 N 1.46504 * 109.46883 * 179.97438 * 21 20 18 23 23 C 1.35312 * 125.86762 * 125.00180 * 22 21 20 24 24 C 1.35350 * 106.17360 * 179.97438 * 23 22 21 25 25 N 1.33765 * 106.49812 * 359.97438 * 24 23 22 26 26 N 1.28639 * 108.88519 * 359.73582 * 25 24 23 27 27 C 1.52830 * 108.12872 * 295.94138 * 15 14 13 28 28 C 1.50733 * 111.74547 * 58.90201 * 27 15 14 29 29 H 1.08997 * 109.27064 * 186.23330 * 28 27 15 30 30 C 1.47819 * 125.64870 * 179.97438 * 9 7 2 31 31 H 0.97001 * 119.99756 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.96225 * 61.55832 * 10 9 7 33 33 H 1.09002 * 109.96358 * 300.31044 * 10 9 7 34 34 H 1.08997 * 109.16331 * 317.61235 * 13 11 10 35 35 H 1.09002 * 109.16233 * 76.86122 * 13 11 10 36 36 H 1.08999 * 109.64106 * 302.57563 * 14 13 11 37 37 H 1.08998 * 109.71438 * 182.03502 * 14 13 11 38 38 H 0.96998 * 120.00192 * 94.34359 * 17 15 14 39 39 H 1.09001 * 109.47612 * 59.99945 * 20 18 17 40 40 H 1.09001 * 109.47122 * 299.99777 * 20 18 17 41 41 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 42 42 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 43 43 H 1.08002 * 126.91372 * 0.02562 * 23 22 21 44 44 H 1.08003 * 126.75054 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.02565 * 179.47768 * 27 15 14 46 46 H 1.08997 * 109.02682 * 298.39099 * 27 15 14 47 47 H 1.09003 * 110.51501 * 84.73365 * 30 9 7 48 48 H 1.09005 * 110.51064 * 322.02244 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1389 -2.5329 -0.0028 11 6 -0.4438 -4.0560 0.0204 12 1 -1.3325 -4.3197 -0.5530 13 6 -0.5725 -4.4488 1.4936 14 6 -0.4498 -5.9593 1.6719 15 6 0.9453 -6.3904 1.2042 16 1 1.7055 -5.8268 1.7451 17 7 1.1270 -7.8239 1.4454 18 6 1.5554 -8.2558 2.6480 19 8 1.7909 -7.4577 3.5304 20 6 1.7428 -9.7304 2.8960 21 6 2.2327 -9.9483 4.3291 22 7 2.4144 -11.3819 4.5703 23 6 3.5495 -11.9748 5.0074 24 6 3.2760 -13.2978 5.0903 25 7 2.0037 -13.4475 4.7055 26 7 1.5195 -12.2930 4.4096 27 6 1.0557 -6.1008 -0.2924 28 6 0.8410 -4.6400 -0.5958 29 1 0.8179 -4.4966 -1.6761 30 6 1.9351 -3.7348 -0.0028 31 1 -0.4850 0.8401 0.0004 32 1 -0.5566 -2.0836 -0.9037 33 1 -0.5609 -2.0554 0.8816 34 1 0.2144 -3.9567 2.0651 35 1 -1.5432 -4.1229 1.8673 36 1 -1.2093 -6.4618 1.0729 37 1 -0.5805 -6.2173 2.7228 38 1 0.9390 -8.4621 0.7396 39 1 2.4794 -10.1258 2.1966 40 1 0.7932 -10.2463 2.7539 41 1 3.1825 -9.4325 4.4707 42 1 1.4965 -9.5529 5.0288 43 1 4.4851 -11.4898 5.2435 44 1 3.9519 -14.0788 5.4059 45 1 2.0469 -6.3937 -0.6388 46 1 0.3061 -6.6869 -0.8240 47 1 2.1779 -4.0451 1.0135 48 1 2.8257 -3.7504 -0.6311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734191457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:11 Heat of formation + Delta-G solvation = 79.768942 kcal Electronic energy + Delta-G solvation = -28467.059235 eV Core-core repulsion = 24559.501866 eV Total energy + Delta-G solvation = -3907.557369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.59079 -40.39863 -39.05786 -35.95764 -35.39016 -33.52734 -31.87760 -31.50060 -31.33369 -30.66512 -28.92732 -26.41730 -25.61343 -24.62434 -23.04721 -22.23762 -22.09022 -21.42329 -20.60794 -19.93079 -18.54348 -18.04531 -17.17671 -16.83234 -16.50892 -16.41730 -15.96351 -15.26959 -14.85133 -14.74685 -14.58264 -13.98678 -13.84933 -13.82067 -13.54563 -13.46411 -13.08516 -12.59456 -12.42991 -12.25111 -12.10205 -11.88050 -11.70456 -11.62414 -11.26008 -11.15503 -11.04200 -10.98352 -10.70240 -10.56877 -10.55473 -10.17863 -10.00418 -9.91862 -9.75864 -9.66569 -9.55777 -9.46339 -9.07180 -8.58032 -6.79695 -5.69310 -3.02147 1.22366 1.86997 2.23716 2.33965 2.97431 3.40520 3.45623 3.47544 3.90965 4.11794 4.20532 4.42386 4.51150 4.65499 4.74440 4.84014 4.85051 4.87837 4.96725 5.14600 5.24158 5.35885 5.39540 5.42270 5.52187 5.56855 5.68327 5.76387 5.78965 5.79234 5.90017 6.02996 6.13166 6.16352 6.20603 6.32045 6.39776 6.42505 6.52082 6.61463 6.78366 6.91412 7.00242 7.26502 7.58250 7.64250 7.84917 7.95418 8.14980 8.27489 9.24216 9.84370 10.51215 11.42304 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.002002 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.528455 B =13981.804648 C =14429.056898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.184 3.816 11 C -0.113 4.113 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.123 4.123 15 C 0.143 3.857 16 H 0.096 0.904 17 N -0.720 5.720 18 C 0.519 3.481 19 O -0.537 6.537 20 C -0.156 4.156 21 C 0.131 3.869 22 N -0.290 5.290 23 C -0.047 4.047 24 C -0.055 4.055 25 N -0.273 5.273 26 N -0.086 5.086 27 C -0.106 4.106 28 C -0.094 4.094 29 H 0.072 0.928 30 C 0.139 3.861 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.399 0.601 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.192 0.808 44 H 0.190 0.810 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.020 0.980 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -23.557 4.949 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.059 3.941 11 C -0.132 4.132 12 H 0.091 0.909 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.039 3.961 16 H 0.114 0.886 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.414 6.414 20 C -0.196 4.196 21 C 0.009 3.991 22 N -0.084 5.084 23 C -0.198 4.198 24 C -0.212 4.212 25 N -0.139 5.139 26 N -0.066 5.066 27 C -0.145 4.145 28 C -0.114 4.114 29 H 0.090 0.910 30 C 0.013 3.987 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.233 0.767 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.209 0.791 44 H 0.207 0.793 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.038 0.962 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.906 -22.990 5.166 23.742 hybrid contribution 1.534 0.962 -0.101 1.814 sum 4.440 -22.028 5.065 23.035 Atomic orbital electron populations 1.69959 1.04829 1.24930 1.57306 1.24792 0.95726 0.97612 1.02469 0.86131 0.78595 0.83616 0.77500 1.21695 1.21714 1.20749 1.19059 0.90401 0.82492 1.43465 0.90555 1.44557 1.01654 0.99789 1.87220 1.21447 0.84264 0.87477 1.00912 1.22466 0.96251 0.99680 0.94796 0.90880 1.21462 1.02212 0.93491 0.97080 1.21895 0.95848 0.97648 1.00815 1.21168 0.98675 0.79250 0.96964 0.88585 1.46106 1.67623 1.09354 1.13928 1.20114 0.77005 0.89735 0.82786 1.90776 1.50590 1.56625 1.43404 1.21885 1.05484 0.95333 0.96942 1.21874 1.05999 0.73290 0.97901 1.47582 1.08636 1.09851 1.42355 1.23774 0.94065 0.94748 1.07237 1.23656 0.95053 0.95821 1.06647 1.75134 1.09181 1.15077 1.14527 1.78302 1.16364 0.91990 1.19958 1.21134 1.01707 0.97584 0.94067 1.21367 0.97363 0.92088 1.00552 0.90995 1.21492 0.94124 0.86221 0.96862 0.93821 0.94369 0.93307 0.91169 0.92230 0.92222 0.92133 0.76714 0.88009 0.87000 0.86494 0.87111 0.79142 0.79326 0.91811 0.91900 0.96243 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.32 55.49 0.57 -26.53 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.25 3.41 -169.63 -0.58 -15.83 16 10 C 0.18 4.35 4.66 -2.43 -0.01 4.34 16 11 C -0.11 -1.98 3.61 -88.85 -0.32 -2.30 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 13 C -0.10 -1.70 4.62 -26.94 -0.12 -1.83 16 14 C -0.12 -1.63 5.53 -26.77 -0.15 -1.78 16 15 C 0.14 1.76 2.29 -67.85 -0.16 1.60 16 16 H 0.10 1.47 6.25 -51.93 -0.32 1.15 16 17 N -0.72 -6.54 5.10 -53.73 -0.27 -6.81 16 18 C 0.52 5.03 7.81 -10.99 -0.09 4.94 16 19 O -0.54 -7.39 15.65 5.56 0.09 -7.30 16 20 C -0.16 -0.98 5.83 -27.88 -0.16 -1.15 16 21 C 0.13 0.86 5.74 -4.04 -0.02 0.83 16 22 N -0.29 -2.32 3.44 -61.26 -0.21 -2.53 16 23 C -0.05 -0.29 11.57 -17.05 -0.20 -0.49 16 24 C -0.05 -0.41 12.05 -17.74 -0.21 -0.62 16 25 N -0.27 -3.06 12.41 30.23 0.38 -2.69 16 26 N -0.09 -0.94 12.92 60.35 0.78 -0.16 16 27 C -0.11 -1.27 4.85 -27.95 -0.14 -1.40 16 28 C -0.09 -1.52 2.81 -90.77 -0.26 -1.77 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 C 0.14 2.79 6.19 -2.86 -0.02 2.77 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 32 H 0.04 1.01 7.51 -51.93 -0.39 0.62 16 33 H 0.05 1.29 6.99 -51.93 -0.36 0.93 16 34 H 0.07 1.34 7.16 -51.93 -0.37 0.97 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 2.44 8.61 -40.82 -0.35 2.09 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 0.68 8.12 -51.93 -0.42 0.26 16 41 H 0.12 0.61 8.03 -51.93 -0.42 0.19 16 42 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.19 0.46 8.06 -52.49 -0.42 0.03 16 44 H 0.19 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.02 0.40 6.15 -51.93 -0.32 0.08 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -34.92 379.91 -8.22 -43.14 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.58 Total: -0.54 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.10 Total: -3.68 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.67 Total: -54.54 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.92 -8.22 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734191457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.910 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds