Wall clock time and date at job start Tue Mar 31 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47601 * 270.00361 * 3 2 1 5 5 H 1.48503 * 109.47126 * 30.00686 * 3 2 1 6 6 H 1.48506 * 109.47143 * 150.00164 * 3 2 1 7 7 C 1.38815 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99717 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.47166 * 125.64877 * 0.02562 * 9 7 2 11 11 C 1.55346 * 106.96440 * 180.93025 * 10 9 7 12 12 H 1.08998 * 112.91004 * 214.96811 * 11 10 9 13 13 C 1.53005 * 106.41348 * 91.60649 * 11 10 9 14 14 C 1.52590 * 111.09147 * 197.23056 * 13 11 10 15 15 C 1.53333 * 108.40995 * 62.28597 * 14 13 11 16 16 H 1.09001 * 109.74019 * 55.60863 * 15 14 13 17 17 N 1.46496 * 109.73868 * 176.27097 * 15 14 13 18 18 C 1.34776 * 119.99846 * 274.34311 * 17 15 14 19 19 O 1.21282 * 119.99940 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00035 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.47184 * 179.97438 * 20 18 17 22 22 N 1.46504 * 109.46883 * 179.97438 * 21 20 18 23 23 C 1.35312 * 125.86762 * 125.00180 * 22 21 20 24 24 C 1.35350 * 106.17360 * 179.97438 * 23 22 21 25 25 N 1.33765 * 106.49812 * 359.97438 * 24 23 22 26 26 N 1.28639 * 108.88519 * 359.73582 * 25 24 23 27 27 C 1.52830 * 108.12872 * 295.94138 * 15 14 13 28 28 C 1.50733 * 111.74547 * 58.90201 * 27 15 14 29 29 H 1.08997 * 109.27064 * 186.23330 * 28 27 15 30 30 C 1.47819 * 125.64870 * 179.97438 * 9 7 2 31 31 H 0.97001 * 119.99756 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.96225 * 61.55832 * 10 9 7 33 33 H 1.09002 * 109.96358 * 300.31044 * 10 9 7 34 34 H 1.08997 * 109.16331 * 317.61235 * 13 11 10 35 35 H 1.09002 * 109.16233 * 76.86122 * 13 11 10 36 36 H 1.08999 * 109.64106 * 302.57563 * 14 13 11 37 37 H 1.08998 * 109.71438 * 182.03502 * 14 13 11 38 38 H 0.96998 * 120.00192 * 94.34359 * 17 15 14 39 39 H 1.09001 * 109.47612 * 59.99945 * 20 18 17 40 40 H 1.09001 * 109.47122 * 299.99777 * 20 18 17 41 41 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 42 42 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 43 43 H 1.08002 * 126.91372 * 0.02562 * 23 22 21 44 44 H 1.08003 * 126.75054 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.02565 * 179.47768 * 27 15 14 46 46 H 1.08997 * 109.02682 * 298.39099 * 27 15 14 47 47 H 1.09003 * 110.51501 * 84.73365 * 30 9 7 48 48 H 1.09005 * 110.51064 * 322.02244 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1389 -2.5329 -0.0028 11 6 -0.4438 -4.0560 0.0204 12 1 -1.3325 -4.3197 -0.5530 13 6 -0.5725 -4.4488 1.4936 14 6 -0.4498 -5.9593 1.6719 15 6 0.9453 -6.3904 1.2042 16 1 1.7055 -5.8268 1.7451 17 7 1.1270 -7.8239 1.4454 18 6 1.5554 -8.2558 2.6480 19 8 1.7909 -7.4577 3.5304 20 6 1.7428 -9.7304 2.8960 21 6 2.2327 -9.9483 4.3291 22 7 2.4144 -11.3819 4.5703 23 6 3.5495 -11.9748 5.0074 24 6 3.2760 -13.2978 5.0903 25 7 2.0037 -13.4475 4.7055 26 7 1.5195 -12.2930 4.4096 27 6 1.0557 -6.1008 -0.2924 28 6 0.8410 -4.6400 -0.5958 29 1 0.8179 -4.4966 -1.6761 30 6 1.9351 -3.7348 -0.0028 31 1 -0.4850 0.8401 0.0004 32 1 -0.5566 -2.0836 -0.9037 33 1 -0.5609 -2.0554 0.8816 34 1 0.2144 -3.9567 2.0651 35 1 -1.5432 -4.1229 1.8673 36 1 -1.2093 -6.4618 1.0729 37 1 -0.5805 -6.2173 2.7228 38 1 0.9390 -8.4621 0.7396 39 1 2.4794 -10.1258 2.1966 40 1 0.7932 -10.2463 2.7539 41 1 3.1825 -9.4325 4.4707 42 1 1.4965 -9.5529 5.0288 43 1 4.4851 -11.4898 5.2435 44 1 3.9519 -14.0788 5.4059 45 1 2.0469 -6.3937 -0.6388 46 1 0.3061 -6.6869 -0.8240 47 1 2.1779 -4.0451 1.0135 48 1 2.8257 -3.7504 -0.6311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734191457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:10 Heat of formation + Delta-G solvation = 55.100621 kcal Electronic energy + Delta-G solvation = -28468.128934 eV Core-core repulsion = 24559.501866 eV Total energy + Delta-G solvation = -3908.627068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.16646 -41.41497 -40.26577 -37.11909 -36.15941 -34.99367 -33.36767 -32.48223 -31.97723 -31.78574 -30.46821 -27.76336 -26.98083 -25.95144 -23.64405 -23.55626 -23.07588 -22.32803 -21.69801 -21.33529 -19.66912 -18.96461 -18.65792 -17.82367 -17.32996 -17.26883 -16.78298 -16.69641 -15.96423 -15.77232 -15.57610 -15.31642 -15.06654 -14.98909 -14.59335 -14.35084 -14.02809 -13.99397 -13.69025 -13.64254 -13.19369 -13.10760 -12.89215 -12.80835 -12.67786 -12.47274 -12.40974 -12.21941 -12.12525 -11.84718 -11.79537 -11.75884 -11.36008 -11.19020 -11.09635 -10.93977 -10.79995 -10.66948 -10.30650 -10.00565 -8.86706 -7.84798 -5.19513 0.67951 1.33991 1.43243 1.45393 1.53935 1.59150 1.65932 2.23429 2.48646 3.32549 3.41312 3.62675 3.64416 3.68030 3.73968 3.78053 3.85176 4.04651 4.17489 4.22549 4.26601 4.30023 4.36115 4.37316 4.50085 4.53727 4.56658 4.63382 4.67454 4.74656 4.82030 4.90258 4.92885 5.03714 5.12564 5.17524 5.25402 5.30984 5.34751 5.43648 5.48281 5.53568 5.57398 5.65751 5.75175 5.81737 6.20309 6.55885 7.11066 7.25535 7.54695 7.78971 8.44043 9.25198 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.002002 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.528455 B =13981.804648 C =14429.056898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.190 3.810 11 C -0.097 4.097 12 H 0.099 0.901 13 C -0.097 4.097 14 C -0.112 4.112 15 C 0.150 3.850 16 H 0.062 0.938 17 N -0.706 5.706 18 C 0.520 3.480 19 O -0.581 6.581 20 C -0.140 4.140 21 C 0.129 3.871 22 N -0.289 5.289 23 C -0.035 4.035 24 C -0.065 4.065 25 N -0.313 5.313 26 N -0.123 5.123 27 C -0.096 4.096 28 C -0.078 4.078 29 H 0.073 0.927 30 C 0.133 3.867 31 H 0.245 0.755 32 H 0.001 0.999 33 H 0.007 0.993 34 H 0.031 0.969 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.419 0.581 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.100 0.900 43 H 0.231 0.769 44 H 0.217 0.783 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.017 0.983 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -26.189 4.195 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.065 3.935 11 C -0.116 4.116 12 H 0.117 0.883 13 C -0.135 4.135 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.080 0.920 17 N -0.358 5.358 18 C 0.307 3.693 19 O -0.461 6.461 20 C -0.181 4.181 21 C 0.008 3.992 22 N -0.083 5.083 23 C -0.186 4.186 24 C -0.223 4.223 25 N -0.178 5.178 26 N -0.102 5.102 27 C -0.134 4.134 28 C -0.098 4.098 29 H 0.092 0.908 30 C 0.008 3.992 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.256 0.744 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.118 0.882 43 H 0.247 0.753 44 H 0.233 0.767 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.035 0.965 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.248 -25.688 4.381 26.403 hybrid contribution 1.192 1.804 0.200 2.172 sum 5.440 -23.884 4.581 24.920 Atomic orbital electron populations 1.70197 1.06232 1.25105 1.58530 1.25653 0.96657 1.01008 1.02930 0.85089 0.77594 0.79215 0.77518 1.21115 1.22174 1.19524 1.19464 0.90930 0.83990 1.42603 0.90258 1.44888 1.02560 1.01086 1.86929 1.21214 0.83524 0.91617 0.97100 1.22372 0.98158 0.94887 0.96199 0.88280 1.21314 1.00710 0.95945 0.95572 1.21787 0.97404 0.94877 1.01017 1.20826 0.96938 0.80844 0.96877 0.92016 1.45861 1.67169 1.08222 1.14520 1.20628 0.75804 0.90767 0.82128 1.90772 1.52448 1.58093 1.44823 1.21771 1.06499 0.92509 0.97288 1.21943 1.06658 0.72714 0.97861 1.47698 1.08833 1.09877 1.41870 1.24442 0.94614 0.94398 1.05143 1.24245 0.94325 0.97395 1.06317 1.75076 1.11143 1.15757 1.15851 1.78250 1.17551 0.92477 1.21958 1.21051 1.04116 0.94400 0.93876 1.21280 0.94300 0.94207 1.00013 0.90849 1.21699 0.95578 0.84793 0.97090 0.94528 0.98118 0.97463 0.94996 0.92412 0.89381 0.92931 0.74370 0.85801 0.86366 0.84915 0.88153 0.75274 0.76673 0.89938 0.88218 0.96502 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 10.32 21.65 0.22 -58.33 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.83 10.28 84.03 0.86 -12.97 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -32.76 3.41 -690.58 -2.35 -35.12 16 10 C 0.19 9.47 4.66 87.06 0.41 9.88 16 11 C -0.10 -3.36 3.61 -9.65 -0.03 -3.40 16 12 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 13 C -0.10 -3.18 4.62 30.46 0.14 -3.04 16 14 C -0.11 -2.73 5.53 30.57 0.17 -2.56 16 15 C 0.15 3.33 2.29 45.05 0.10 3.43 16 16 H 0.06 1.85 6.25 -2.39 -0.01 1.84 16 17 N -0.71 -10.44 5.10 -442.28 -2.25 -12.70 16 18 C 0.52 8.89 7.81 87.66 0.68 9.57 16 19 O -0.58 -15.50 15.65 -3.04 -0.05 -15.55 16 20 C -0.14 -1.38 5.83 29.85 0.17 -1.21 16 21 C 0.13 1.43 5.74 86.38 0.50 1.92 16 22 N -0.29 -4.03 3.44 -347.72 -1.20 -5.22 16 23 C -0.03 -0.33 11.57 83.49 0.97 0.63 16 24 C -0.07 -0.85 12.05 83.73 1.01 0.16 16 25 N -0.31 -6.75 12.41 -58.26 -0.72 -7.47 16 26 N -0.12 -2.55 12.92 37.02 0.48 -2.08 16 27 C -0.10 -1.92 4.85 29.80 0.14 -1.77 16 28 C -0.08 -2.39 2.81 -10.89 -0.03 -2.42 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 C 0.13 5.36 6.19 86.42 0.53 5.89 16 31 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.00 0.03 7.51 -2.39 -0.02 0.02 16 33 H 0.01 0.41 6.99 -2.39 -0.02 0.39 16 34 H 0.03 1.27 7.16 -2.39 -0.02 1.26 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 3.11 8.61 -92.71 -0.80 2.31 16 39 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 1.10 8.12 -2.39 -0.02 1.08 16 41 H 0.13 1.05 8.03 -2.39 -0.02 1.03 16 42 H 0.10 1.34 8.10 -2.39 -0.02 1.32 16 43 H 0.23 0.12 8.06 -2.91 -0.02 0.10 16 44 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.02 0.71 6.15 -2.39 -0.01 0.69 16 48 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -82.55 379.91 2.42 -80.13 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.17 Total: 6.96 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.09 Total: 0.51 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.82 Total: -120.91 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.05 Total: -15.55 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -82.55 2.42 -80.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734191457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.235 kcal (2) G-P(sol) polarization free energy of solvation -82.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds